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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0502400 |
| Transcript ID | LotjaGi3g1v0502400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G15630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial; TrEMBL-Plants: tr|K7LT27|K7LT27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92053341..92056677) extracted from Lotus japonicus Gifu genome v1.2.
TTCCATATATATCAAATACTCAATGATTATAATTAACAATTGATTTGGGAAAAAATTACCCGTGCGGGCAAACGGGCTCT ATCCTAGTAAGCCTTAGAACTTAGAAGCTAAAATATGTGCCACGTTGTTTGCCTTTCTCCATACGCACCGAAGCTCCACC TTAGCGAAATTGGCTGCCAAAGCTCTGCATTCCTGCATTATTGGTGCAATCAAAGGGGGGCAACTAGCTGTCATCAAAGC CCTGACCACCACACTGTTATAGCTAGCATCAGTAATGGCAGCCGTTGGTTAATTCATCAACCTTGCCATTGAAAATCCTG TAGTATCTGGCCCTCCAAATTGCATTTAAACCCTGCAGAATCTATATAACTACATAAGTACTTCAAAAACAGCAAATCTA TAGTTTAAGAAACAAGAACATATATAACTAACAAATCCAATTTTGCTCAAAGCTATGAAACAAATATTAAACCATAACAA TTCAATCCATGTTTACTCATTTACTCTCATGATTTTTCTCAACTACTTATGTTGCAATGGTGCTTGAAGGAAGCCAATAA TCCAAATAATCCTTAGTGTGAGCCTGCAGCTTTTCAATGCTTCCTTTTGCAAGGCTGAAACTTCTCACATGCACAATGTT TCCCTCTTGTAGGCGCATATTTTCCACCATCTGACGGTTGGAACAGTAAAACACCAGAATGATAAATAGTTGGAAGCAAA ATTTGATACCCAGTTTGATATATATATATATATGATTCCCTCATCAACGATGAGTTTCAGAACCCCCACAGTGAGTAACT CTTTCAGTAGAAGGATTTTTGGGTTCAAATAACATATGTGCAGATATGCTGGAAGATTTTTACATGGAAAAAAGTACCAA TTTAACAAAGAGAACAAAATTCAAATAGTTACATGCAAAATTAGTGCTTCACATTCACATTCAATAAGTATAAAATTCTA TAAACAAATTATTCTTGTTGTTAAAATCTAACTCTGCAATTAATATATCATTGACATGCTCAATTTCATTAATTTTATAA GGTAGATAAGATTACAATGTTTGCTTATTAGTTTGATGTCAAACCATTCATAGGAATACCAAGAACTCTTGCTTAATGAT TATAAAGTTCTGGCTTTAGTTTTTGACTTTTTTTGCATTTCTATGCATTCAAGAAATTTTACCCATTATGCAACCCCATC TAGCCAAGAACTGATTACCTGAGTTTAGTCATGGTGTGAGTGATAGCTATGAATTTACTACTCTCTGTTTCTTACACACG TTGCATATGAAACATTTTGTTGTGTCTCATACTTTTCCAAGTGAGCTAAAAATTTCTCAATGTGATGCAAGCACCTGTGC TTACCCAGTTATCTAATAAAAAAACGATCAATGTAAGTCGTGAAACAATTGAAAAATAAAAAAAAATACACTCCAACAGA TAATACAGTTAATCAGTTATACAGCATTGCATCAAAGTGTGAGATTATTTATTTGATTCATTTCCTAGTTATCAGGGAAA AATAAAAACAGAAAATACATTAACTGATGGGCTTCATTCATTTGGGCCTAGTGACTAGTTTTCTTTTCCTCTAATCTCCC TCCCTAGACCTAATTTCTATTAGAAAATCCCCAGAATTCACATCATCATCGATCATCATGAAATTGCTTAAACTCTTCAT CAGTTGACGCAAAACGATCCTCAACTCCCTGACTCGCTCTTTGTCCTCTGCTTCCGTTGCTGTTTCCAGTCCCACGCCCA CTGCATTACACCCACCACCTATCACTGAATCCACACTCCTTCAAGCAGTTGAATCTTCTCAGCGGCATTTCATCGAACAC CTTTCCCCACACCTCACCCCTTCCATTCTCCCCTCTGTTCAAGCCTCCTTTGACCTCACCACTCGATGCCTCGCCTTTTG TACCCTCTTCCGCCTCTCATACCCCCAACCCTCCGTCCACCGCCTCCTCCACCCTCTCATTCTCACCGGTGCCACCAATC CAGAGTCAATTCTCAACGAACTGGCATGTGCCCAGGAGCGTCTCAACGTCAACACCACCAGGGTGTTTGAAGCTCTCATC ACGGCTTATTGTGAACTTGAGAAGCCTGATGAGGCTCTGAAGTCCTTCTATTTTATGAAGGAAAAGGGGTTTCTGCCAAA TATTGAAACTTGCAATGACATGTTGATGCTGTTCCTCGAGTTTAATAGAAACCAGGCTCAGGAGTTTATTAGGCACTTGG AGACTATTGGGGTGAAGCCTGCTATTTATAATTATAACACACTAATACACAACGGAGAGAAGTACGAAGCAGCTTGTGTG ATGTTTCAGGATATGACAGATGATGGACTTGTTCTTGGTTCTTACAGCATTAATTCTTTTATTTTTGTGATGTATAAAGA AGGAAGGCTTGAGGAAGCATCTGAGATACTTCCTGAGATGTTAGAGTCAAAGTCTGGGTTGGTGCCACATGCACTAATAT ATGATTCCTGGATTGATGAGTGCTGCGGTGAAGGGATTGAAGGGAGTTTGGATGATATAGATAAGGCTATTGCATACAAA GATGAGATGATAAGCAGAGGGATACAGCCAACGATTGTCACTTACACTTTGTTGATTGAGGCACTGTTCGAGGTAGGGCG CTCTTGGGGAGCTGAGGATATGATAAAAGAAATGCACGAAAAAGGGTTGAAGTCGGATGTTTATACTTATAACACATTGA TGAGCGGGTATGCCAAACGCAAGTATATGGATAGACACATAAGCCTTTATGATGAAATGGTGGAGAAAAGGATCCAGCCC AATCTGTTAACATATAATACCATGATGCTAGCCTACTGCAGGTGTTGGAAAGTGAATGAAGCTCAAAAACTTTTTGATGA GATGAAGACAAAGGGGATCAAACCTGATTATATTAGTTACAATTTACTCATTGGTGGTTATTGTGATAGAGGAGGTGATG TGAAGGAGGCTTTCAGAGTCCGTGATGAAATGTTGATGGTGGGATTTGATCCTACCATTACCACTTACAAGGCTCTTGTA CTGGGCTGTTGCACACACCATGAAGTTGAGCACGCTGAAGAGGTCCTTAAAGAAATGGTTAATAAAGGCATTTGTACTCC TGATGACAGAGAATACCTAGTTTTAACTGAAATGATTAAGGAAACAGCTGATGAAGTGGTGGGAAATAGGAAACGTTGAT GAGTGAATTTGTGCTTGTTTTCATCTTCTTGAAATGAAGAACTAGATAATGGAATTAAGGCACTATTTGCCTTAGCTCAC TTAGGAGATTATAATTTATTTATTTATTTCAAGAGTCGTGTTAGTTATGACATAGCC
CDS sequence (LotjaGi3g1v0502400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAAAAGGGGTTTCTGCCAAATATTGAAACTTGCAATGACATGTTGATGCTGTTCCTCGAGTTTAATAGAAACCA GGCTCAGGAGTTTATTAGGCACTTGGAGACTATTGGGGTGAAGCCTGCTATTTATAATTATAACACACTAATACACAACG GAGAGAAGTACGAAGCAGCTTGTGTGATGTTTCAGGATATGACAGATGATGGACTTGTTCTTGGTTCTTACAGCATTAAT TCTTTTATTTTTGTGATGTATAAAGAAGGAAGGCTTGAGGAAGCATCTGAGATACTTCCTGAGATGTTAGAGTCAAAGTC TGGGTTGGTGCCACATGCACTAATATATGATTCCTGGATTGATGAGTGCTGCGGTGAAGGGATTGAAGGGAGTTTGGATG ATATAGATAAGGCTATTGCATACAAAGATGAGATGATAAGCAGAGGGATACAGCCAACGATTGTCACTTACACTTTGTTG ATTGAGGCACTGTTCGAGGTAGGGCGCTCTTGGGGAGCTGAGGATATGATAAAAGAAATGCACGAAAAAGGGTTGAAGTC GGATGTTTATACTTATAACACATTGATGAGCGGGTATGCCAAACGCAAGTATATGGATAGACACATAAGCCTTTATGATG AAATGGTGGAGAAAAGGATCCAGCCCAATCTGTTAACATATAATACCATGATGCTAGCCTACTGCAGGTGTTGGAAAGTG AATGAAGCTCAAAAACTTTTTGATGAGATGAAGACAAAGGGGATCAAACCTGATTATATTAGTTACAATTTACTCATTGG TGGTTATTGTGATAGAGGAGGTGATGTGAAGGAGGCTTTCAGAGTCCGTGATGAAATGTTGATGGTGGGATTTGATCCTA CCATTACCACTTACAAGGCTCTTGTACTGGGCTGTTGCACACACCATGAAGTTGAGCACGCTGAAGAGGTCCTTAAAGAA ATGGTTAATAAAGGCATTTGTACTCCTGATGACAGAGAATACCTAGTTTTAACTGAAATGATTAAGGAAACAGCTGATGA AGTGGTGGGAAATAGGAAACGTTGA
Protein sequence (LotjaGi3g1v0502400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEKGFLPNIETCNDMLMLFLEFNRNQAQEFIRHLETIGVKPAIYNYNTLIHNGEKYEAACVMFQDMTDDGLVLGSYSIN SFIFVMYKEGRLEEASEILPEMLESKSGLVPHALIYDSWIDECCGEGIEGSLDDIDKAIAYKDEMISRGIQPTIVTYTLL IEALFEVGRSWGAEDMIKEMHEKGLKSDVYTYNTLMSGYAKRKYMDRHISLYDEMVEKRIQPNLLTYNTMMLAYCRCWKV NEAQKLFDEMKTKGIKPDYISYNLLIGGYCDRGGDVKEAFRVRDEMLMVGFDPTITTYKALVLGCCTHHEVEHAEEVLKE MVNKGICTPDDREYLVLTEMIKETADEVVGNRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 104 | 104 | 5.2E-10 | ||
| Pfam | 1 | 51 | 51 | 5.7E-4 | ||
| ProSiteProfiles | 9 | 42 | 34 | 5.097 | ||
| PANTHER | 30 | 344 | 315 | 5.6E-84 | – | |
| PANTHER | 30 | 344 | 315 | 5.6E-84 | – | |
| ProSiteProfiles | 75 | 109 | 35 | 7.421 | ||
| Pfam | 80 | 105 | 26 | 0.059 | ||
| Gene3D | 105 | 180 | 76 | 3.1E-11 | ||
| ProSiteProfiles | 112 | 152 | 41 | 6.171 | ||
| ProSiteProfiles | 153 | 187 | 35 | 9.723 | ||
| Pfam | 154 | 201 | 48 | 2.6E-11 | ||
| TIGRFAM | 155 | 188 | 34 | 2.1E-4 | ||
| Gene3D | 181 | 354 | 174 | 1.2E-47 | ||
| SUPERFAMILY | 187 | 287 | 101 | 4.63E-6 | ||
| ProSiteProfiles | 188 | 222 | 35 | 12.375 | ||
| TIGRFAM | 190 | 223 | 34 | 4.7E-8 | ||
| Pfam | 222 | 271 | 50 | 4.6E-17 | ||
| ProSiteProfiles | 223 | 257 | 35 | 13.811 | ||
| TIGRFAM | 226 | 258 | 33 | 3.6E-7 | ||
| ProSiteProfiles | 258 | 293 | 36 | 11.981 | ||
| TIGRFAM | 260 | 294 | 35 | 5.7E-4 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.095 | ||
| Pfam | 297 | 326 | 30 | 1.1E-4 | ||
| TIGRFAM | 297 | 330 | 34 | 1.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0502400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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