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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0506800 |
| Transcript ID | LotjaGi3g1v0506800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G11750.1 CLP protease proteolytic subunit 6; Swiss-Prot: sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic; TrEMBL-Plants: tr|I3SZ96|I3SZ96_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi3g1v0506800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92403605..92412391) extracted from Lotus japonicus Gifu genome v1.2.
ATCGAAACAAAAAAAACAAAAAGGTTGGGTGTTCTCTTCTCTTCCTCATACGCATTCATTCGTTGTGAAGCTTCAACAAT GGCAGCTCAAGCTGTGTCAGTGCCTGCGACTGCAACCTTCTCTATCGCTTCTCGCCGGAACACTCCGTCACACCTTGCGT TTTCTCACAGAAATCTATGCCAGATAGCTTCTAACTTGTCAAGCCCCTATGGTGGTCATTCATCGAAATTTGGTAATTTT CTAATTTAATCACTTCTCTTCCCAGCTGCAATTCCAATTTTTGTTAGCTTGCTCAATTTTCAGATATTTAGCCAAATTAG GGTGAATTCGGGTACAGCTTAATTAAACGCTTATAACAATAAGTGCTTATTCGAAAGCTAATTTGATAACCTTATTGAAA TAAGTTCAAAATAGGTTATGAGTGTGTTTGGGTAAATAGCTTAATTAAACGCTTACGAGTTATGACAATAAGTGTAAGCG CTTGTTCATATGCTAATTTGATAAGCTTGTTGAAATAAGCTCAAGATAGGTTATATGTAGGTATAGTCAATAGTGCTTAT TCGTAAGCTAATTTGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATAGTCAAGTCATAAGCTGTTTATGTAAGTTTT CTCAAGCACTTGTGTAAGTGCTAGTCTATAAGATATGCTCAAAGAAGCTCTTCCAAATGGGGCGGGCATTAGTCCATAAC TGTGTCACGTTGTTGTAGTGACTAAGGTTTCTCATTTGCAGCACAGATTGATTCATTGATAAATTCAAATTCTTTACGCA GCCTTTAGTGTGTCTAAATTTTATCCTATTAACAGAATGTTGGTCTTTTTTTACAAGGCAATGAGTTATGATGTGCACTA TGAATACTTTGCATTTGTACAATAAAACATGTTATGATATGATATTGATATGTATGTTTTTGTTTTAAGCAGGGTTATCA AGTAAAAGCCCTGGCTTTCCTTTAAAGCTTGATGAGAAAAATACCTATGATGCTAGTACAAGGTACAATTTTGCTCCTTT TTTTTATTTCAAGTGCTTAATGTATTATGTGATTGTTTGGTAGGCCTTATTATGAATACCCATTTGTTTCCATGTTCATC TGGCTTTGCTCAAGGCCTAACTTGTCTGTGATTCTTTACAGGAAAAGTAAGTGCATCCTATAGAGGTGAATTAGGTTAGA AAGGAGTTTATTGTGAAACACTACTAAGCAATTCTGCTGATAGAATGTAACTGTATATAGACTGACTGTAAATGTGATTT TTAATTAATTTTGTGCACCTTTTTTCCTTGAGTTGAATTTATACTTAAAAGGATTCTCTCACTGACTTGAATTCGGTGCC CAGTCTCTGCATATTTAAGTATTAATGACTTGAAGAACAACTTATTGATATTCCAGTTTCCTTGTAGTTACGGTGCAATT GAAGCCAAGAAGGGGAACCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCGTCTGTTTTGTT CAGGAATCGTATAATATTCATAGGACAGCCAGTTAACGCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGG CTACTATTGATCCAAATGCAGACATACTGGTTTGTCATATCTTGACATTGCTATTTTACTTTTGTCTAGTCAGGAATTGG AATTAATATTGAGCTGCTTCTATTGGCAGATGTATATCAATTGCCCTGGTGGAAGCACATATTCAGTATTGGCAATTTAT GATTGCATGTCTTGGGTAAGATAAAGGGTTTGTCCCCCCCCCCCCCCAGTTGCATTTTTACTTCTTTTCAGTTATTTTAA TTCTTTAATCGTTGTCAATGTTTCTAACCCTAAAAGCATTTGGTGACCCCATTTGTTTTCAGATAAAGCCCAAGGTTGGT ACAGTATGTTTCGGAGTAGCGGCAAGCCAAGGAGCACTTCTCCTTGCTGGTGGGGAGAAGGGAATGCGCTATTCAATGCC AAATTCCCGCATAATGATACATCAACCCCAGAGTGGATGTGGGGTATGAATCAAGATGCCCTTGATATTTAGAAGCTCAC AAGTCATGAAACAGAAAAATCCATAATGAGTTTATGTAGGAAGCGGATAATGATAATAATACAGTCATAAGAGGGAGAAG GGAATCGATAGAGTGTCCATATTTTAATTGGGCATTAGAGGAGAGTGTTGAGCCTCTCAAAAGTCTCAACAACCTTTTGT ATCTGTTAGCTCTATTTTTTTAAGTTCTGTCTATATTGGCAAGGTTAGGTAATTAGGGTTCTTCATCAATACTACATTCA ATTTCTTCAATTCTTTCACGTTCTTGGTACCAATCTTATCATCTGGAGATTCAAAGTTAAAGATAAATCTAATCAACCTT TCAGTAATGTCAAATTTTGATTTTTGATTTGATTTTGATTTATTTGTCTTAGAGTTTGGGTTAGACCAAACTCTATCTCG AAAGCTAGCTTTTGGGGTAGAGTTAGGCTTAACCCAATTTCTAAGATGGTTTTAGATGATAGGATTGAACATTTGCGGAT GGCCCATATATAGGTGGTCTTTAATAAATAGATCTAAGATAGACTCTAAGGCAATATTAGAATTTGGGTTAGACTGAACT TTACCCCAAAAGATAGGCCTAACCCAAATTCTAATAGGATATGAGAAGTATTATTAAATAATTTTGATTGCCCGCTAGTA GGAGATATTATGTGAAGTTCGTTGGTCTATACTAAATAAACATCATGATACTGATAATTCTTAATCTGATTGTAGGGTCA TGTTGAGGATGTAAGACGCCAAGTGAATGAAGCTGTGCAATCTCGCCATGTTAGTCTTTCTTCTTTTGAGTGGCTCAATT CTAGTAATTTATGGACAGCTGTAATGCTTTTATGAACTTGATTTGTGAAAACAAGATTTTTCATTAACTCTTAACTATGG CATTTATACTTATGACAATCACAGAAAGGTATCTAACATGTTTGGATTTCTCAATTCAATATCACTTTCATGCCCTGCCT TTGCACATCCTTGTTACTGGAAAACTATATATTAGCCTTCTTAAAAAATATGTTATATGTAAAATCATTCATAAGCTTTC ATCTAACGAAGCTTTTGAGAAATGGTTTATGATACTTTATCGAAGTTTCTACGACTAATTGTCAGGAGTATGATGTTTAT CTTCCCTATTCTGAATAGAAGTTAATTTTAGGCTTGAGCACAAGGGAGAATAGGCCTGTATACCGTTTATGCTTAAGCCT CAATGTCTCTTCCATGAGGCAACAAGACCATCCATGAACAACTAAAATATTTGGAATAGTTAGTTCATGATGTAAGAATA TTAAATTTCAGTTTTCAAGATGTGTGAAAGGGCAAACCTAATTTAACATGATTTCTTCATGCCCAAATTCCCATGGCAGC AGTTACTTTTTTCCCCTCTTTCTTGTAGTTGTTGTTGTTGTTGTTGTTGTTTATTTGACAGTTCTTGGGATGTTAAGCCT AAGTGCCTCCTCTTTTTTCTTCTATTTCGAGTACAGAAAATTGACAAGATGTATAGTGCTTTCACCGGACAGCCAATCGA GAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTTTCTGTTTCTGAGGTAATGTGAACTGTTTTTCATCTTTAACGCT GAATTAAGTTTATTGAACGGAAGAGTGAGGACACATTCTCAAAGAAACCAAAATGCTGTCTTTCCTATAAGAAATGAAAT TTAATAAAAGAAGTTTTTGTTGATAGACGGGAGTAAAAGTATTTGATTAGTTTAATTAGTCTATAAAATGAATGCATGCA AGAACACCATTGTCGGTTGTAACTGGAAATCTGGAATAGCCATTTCTCTAGTATTTTCTATCCTGGTGATTATTAAGTTG ATTAGGATATCTGAGGGCGGCTATTATTTTTCTGATCTCAGCTTCTGTAGTAATTGATCCTCTAAAAATCATTTACTGTG TATCTTTTGTTACTTTTCTCATTGCAGGCTTTGGAGTTTGGTCTTATTGATGGTGTACTGGAAACAGAGTATTGAACCCA GGTTATTTGCATGATATTTGTAATTCTATCAAGTTTTAAAATTTAGTTTTTGTCTGGCTGATTGTAGAACATGATGAATT ATTTATAATTTGCAAATGTTGAGAGTGATTTTTTTCTTCTCAGCTCCTCATGCATATGCAATTATTTTGAAGTTAACTTT CATAGAATGGTTGATCTGGTTTCAATTTACAACTAGGGAGTTAAAGGTAACACTGCTTGTCTCTTTGATTTGAGAACCTA GGTATACACCCCAAACTTGTATTCTAACACTACATTATCTATCTCTTTCTGTGTCAAATTACATTATCTATCACATCTTT TATTTCTTTCACTTTTCTTTCTAAATCCATCATCTCATTTAGGGTGTCTGTACCTTCTGGGGGTTTTACAAATATTTCCT TAGTAAAATAGAAAGCTCTGCTTTTACTCTATAATAGTATAATATATTAATATTATATATTTTAGTATTTATATACTCCA ATATTAAAGAAATAAATTAAATTAAAATAAAAATTTTGATTTAATGCAAATCACTTTATATTGGATCAGATTAGATTTAA ATTCAGAGTCAAACTGATAATCAGAAAAGTTAGTTGGATAAATTTTTCATTTAAAAGTGATCTACAAACACACCTAATTA GTTCATAGAAAAATGCTAGCAACATCTCCTTGACACTCTTTCTAACACTCTATTTTTGATTGGTTAAAATTCATGTAGGG GTCTATTAAATTATATTTGTATGCATTTTTATATCTTAAAATATAAGCCAAAGTGTTTCCTTGATGGAGAAGGGGTAGAA ATAGATCAGGCCGACCATGTTGTTTCTTGGGCTTCTGACCTGACCTACATTAAGCTGAGGTCAAGTCAAGTTAATAAATT GACAAAGGCAATACTTTTTTAAAAGCCTATTTGGTTAAAAAGATTATCGACTCAGAAAGTCTTGTACGCCTAACTCCTAT TTAAACAATTATAATAAGTTTATCTTATTATTTTTAGTTAGATTTTTATTATAATATCTCAAAATTATATATTTTTTTAC TTTGTGGAACACACATTTAAATAGGTCTATCATACTAGACTTTTAAAAAGATGATTAGATGACACTCAGACTTAAACAAG AACTCATGACATGTAACAGGGCAATATGCCAAACTCAATGATTTGATTTGTTAAGTAGGTCAGACTTATTTAAACAAAGC GGAGTCTAACCCAACTTATTTCCACCCATAACAGGGACACACTACTACCAATAGAAGCAATAATGACACTTGAACATACA AACTGTGGTGACACTCAACACACCTTATTTTTCTCTCTTTCTCTCTTCTTTACATATATTTAATTAATTACTTGTCTCTC TTCTATTTTTTTCTCAATTGAGTGTATATGTTAGATTTGATCATTAGATTTGGCACCCCACTCCTTAGAAATGTCACCCC ACTTACGGAAACTTAGTTTCCGAAATATTTCGGAAATAAGGTTTCCGAAGCATTTTTTCACTCAAAAGTGGGGTGTTACA TGTATTTTGCACTACAAATCACGAATTAATTTCGGAATCTAAGATTCCGAAATAATTCGGAACTTGAAAATCCGAAATTG GGGGGTGTGAAATCTAATGGTTGGGGTGGCAAATCCAGCTCTCGTTAAATTTCTATTCGTATGTTTAAGGATAAGCATTA TTAGGGCCATTGAAGGAAGGAACTTTCCTATTTATATCTCTCTCTTTTCGATGCACCTTAAGGATAAGGATGGATTAACC CAATCCCAATGCGCAAAATGCAGAAAACTAGGATTAGTTAGTTAATTACTTTGCCATCTTTAGTCTATAAATGTTTCGTA GACCTTCTTGACCCAAAGTTGGGGGAGTTTTTCTGTAGTGGCGTGACGACATAAGAGTTTCGGTAGGCGTACGTTGCGGG AGCAAGTTAATGCTTCATTTCTGGATGCAGCAGGTGTTAATTAATTCTAACTTTGATAAACAACTCAATTTAATTCTTGA ACATGAGCAGGCTCATCTACTCTAGGAATCTTCATCTGCATGTTAATTGTGATGTTGGTTTGGAAAATATTTTTAGTCCT CCAGCACCACTGCACCACTTAGTGGATGGTGAGTACTCATTTCATTCATATTGTGATACCTGCTCAGGCATGGTTCTATT GAGTTATGGAAGGTGAAAGTTTAATAGACTAGTACTCACTACTCAGTAAAATTAAGAATTGATTAAATTAATAATACTAA TACTATGCTTTCCAAAAAAAATAATACTAATATATTTTGAGGGGCAAATACAACATTAAAATACTTCTTTAATTAATAAG GTAAACTTTCTTTTTGGGGCCGTCTGCCCGTCTGCTCCATTTTTTGACCATCTCGTCTGTCCCTGTAATGTATGGTTAAT TATCAATTTTTTCAAACTTTTTTGAATTTAAAATTCTAAATTTTGCTACTTCAGGTGCCAATTACGGGAGGAGTGAAAAT TTACTAGTTGGTTTGGGTTAGGAAGTAGGATCATAGATATTTTTATTCGAATTTAACTTAGAATTGTGTTACTGAGAGGT GTAAATGATTCTAACTTGCTAAGTAAGTGATACCTCCAATTCTTTTTGAAACAACTTAGCTAAAGGTATAACTTGGTCAT TTTTATATGTTTGTAATTAAATTATGATGTAATAGGTGTATTTTTTCACATATTTACACTTTATTTTTGTCTCTTAATTT CTTCCTGTAGAATTACTGAACAGAATAGCTTAAATGTCTGGGTACGCAAAATGCACGGATCCAGAGAATCATTGAAGAAG GTGCACATGATTTTGTTGTTCTTCTTTTTAATATGGATTACTAGTTAAATAGCAGGTGATCTAGTAGTATATAAATAGCG TTCCCTTGCTAAGAAAGGAACCCAAAAATAATGAAACATTAATTGTTCATTAATTACGTGTGATTAAGACCCTATCCGTT CTTAAGAAGAAAAAAATACCCAATTATTTGTCTCGGTCATCTGATAAACTTTTTTTAAGAAATAGTGAGAAGTTATCATT TTTTTAGTACATCTGAAAGATAAATTGCTCCCACTAGGGATTGATCTCTGAACCTCCCCACCCAACCTATATGTCTCCTA GCTCTTACCACTTGAGTTATCATTCGGGGACTGAGAAGTTATTGTAAAATTACTCATCACATGACGATAATGTAATAAAT TCATAATTACTCAGCCCTAATTATTATTATTTTTAAAAAAAATTGGTGTATTTTTTTCTTGTCTTAACAAAAGTAGGTAT GCGTGAGACTAATATCTGGAGTGCCTCATAGTCGGCGCATTAAGTAGTAGATGACTAATCAATGAGTTTTGTTTATTCAT GAGTTGAGAATCAAACTCTCGATCGCTTAGTTAAGAAATGAAGTGTTGAATAACTATGTTAACCGGTTAGTTCTTGGTGC AACTAAAATCAAAATGAATGAAAAAAAATTCTAATAAATATTATTCTTATGTGATCAGCCAGCAACATGTGAGATAAATT AGTAAGGGATACGCAACTCTGAACATCAGCATGCTTATGAAACAGGGAAAGAGATTGTTACGAGCAAAATAATTAGTCAA CTATAATAATGTTTTGTTAAAGCTTTAATTAGTCTTAACTTGTGGCGTCTTTAAATGAAAGGAGTATATTTGAAGTTTTC AACTCTAGTGTGTCGCTGTGTGAGGCTATATTTATGAAAATGAAATCTCATCTTCCCTTGGCCGAAGACAAATCTCAACT AATATTAAATTAATTAGGGGAATGCTCACTAGTTGTAAAAGCAAAGGGAATCCTTACATGTCTATACACTGTCAAATTAA AATAGGTGGTGTCCCAAAATTACCATTCATAACTTAATGAGTTTGATTTATAACTTTATGAATTCTTGCATGTAGCAGCT TTTATAACTTATAACCAAATTTTGTAAATCGTTTTATGTTAGAACTGTTTTAGTCTAATCTAATCTAATCTAATAATATA TAGTTTGGGAGTCATTAAAAGCTTAGGTGTCAGTAATCTACAGCTTCCACAATTATAGGGACATGTGGCAAGCTATTAAA ATTCATGAAATATTATATAGCCAAGCTTCATAATATTCATCTAATAAACCTATACTATTTGAAATTTGAAATTCAAAATA TAAAAGAAAAGAAAAAACAAACGTAACAACCACCTAACTTCTCTAAAAAAAAAAAAAACAACCAGCTAACATAAAATTTT TCAACATGTATGGTCAAAAGTTTTGGGAAACAAAATTGGCAATGCATCTGGTCATTTATTCATTCATCTTCAACTCATAA AAAAGAGGCAAATTTAAAATACAAAATTTAAAATATTTTTTAAAAAAACATTTATTATAAAAAGACCAATATCATAGGCT TCAGAATTCACGTTCTCCATCTCACAAATCCTCACACAACTTTCTCTACTTCACCCTTCTTCCTCTCAACCATGACAAGC CTTATGGATCATCATGTATATTTACAAACTTCAACACGTCACTCATGTGTATGAACTTCCAAGAAAAAACTACAGCTAAT ATGATTACAGTAACAAACATTTCCATGTTTGGATTCTCATTCGTTTCATATTCTGATTTGATACATCTTTTCTGGTTGGT AAGTACATCTTTTTTGGTTCGTATTTCCTTCTGTTTCCATTTTATCTTTAAAAAAACTAACTCCTTT
CDS sequence (LotjaGi3g1v0506800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTCAAGCTGTGTCAGTGCCTGCGACTGCAACCTTCTCTATCGCTTCTCGCCGGAACACTCCGTCACACCTTGC GTTTTCTCACAGAAATCTATGCCAGATAGCTTCTAACTTGTCAAGCCCCTATGGTGGTCATTCATCGAAATTTGGGTTAT CAAGTAAAAGCCCTGGCTTTCCTTTAAAGCTTGATGAGAAAAATACCTATGATGCTAGTACAAGTTACGGTGCAATTGAA GCCAAGAAGGGGAACCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCGTCTGTTTTGTTCAG GAATCGTATAATATTCATAGGACAGCCAGTTAACGCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTA CTATTGATCCAAATGCAGACATACTGATGTATATCAATTGCCCTGGTGGAAGCACATATTCAGTATTGGCAATTTATGAT TGCATGTCTTGGATAAAGCCCAAGGTTGGTACAGTATGTTTCGGAGTAGCGGCAAGCCAAGGAGCACTTCTCCTTGCTGG TGGGGAGAAGGGAATGCGCTATTCAATGCCAAATTCCCGCATAATGATACATCAACCCCAGAGTGGATGTGGGGGTCATG TTGAGGATGTAAGACGCCAAGTGAATGAAGCTGTGCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTCACCGGA CAGCCAATCGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTAT TGATGGTGTACTGGAAACAGAGTATTGA
Protein sequence (LotjaGi3g1v0506800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAQAVSVPATATFSIASRRNTPSHLAFSHRNLCQIASNLSSPYGGHSSKFGLSSKSPGFPLKLDEKNTYDASTSYGAIE AKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNAQVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYD CMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTG QPIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 275 | 243 | 3.3E-132 | – | |
| PANTHER | 33 | 275 | 243 | 3.3E-132 | ||
| Hamap | 88 | 274 | 187 | 33.526 | ||
| Gene3D | 97 | 274 | 178 | 1.1E-62 | – | |
| SUPERFAMILY | 99 | 273 | 175 | 8.08E-55 | ||
| CDD | 100 | 270 | 171 | 1.58882E-89 | ||
| PRINTS | 100 | 115 | 16 | 3.1E-43 | ||
| Pfam | 100 | 273 | 174 | 2.6E-67 | ||
| PRINTS | 140 | 160 | 21 | 3.1E-43 | ||
| PRINTS | 171 | 188 | 18 | 3.1E-43 | ||
| PRINTS | 192 | 211 | 20 | 3.1E-43 | ||
| ProSitePatterns | 193 | 206 | 14 | - | ||
| PRINTS | 249 | 268 | 20 | 3.1E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi3g1v0506800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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