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IPR042239

Source: InterPro

Description

IPR042239 is a Nop, C-terminal domain.

<p>The Nop domain is present in various pre-RNA processing ribonucleoproteins (RNP):</p> <ul> <li>Eukaryotic Prp31, part of a tri-snRNP complex. It is involved in pre-mRNA splicing.</li> <li>Eukaryotic Nucleolar proteins 56 and 58 (Nop56 and Nop58), components of box C/D small nucleolar ribonucleoprotein (snoRNP) particles.</li> <li>Archaeal Nop5, an homologue of Nop56/Nop58.</li></ul> <p>The Nop domain is a RNP binding module, exhibiting RNA and protein binding surfaces. It is oval-shaped and exclusively α-helical [[cite:PUB00027813], [cite:PUB00062919]].</p> <p>This entry represents the C-terminal part of the Nop domain.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0618800.1
– U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800
Domains
17
LotjaGi1g1v0618800.3
– U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800
Domains
17
LotjaGi1g1v0618800.4
– U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|A0A0S3TBB0|A0A0S3TBB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800
Domains
17
LotjaGi2g1v0196600_LC.1
– Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC
Domains
11
LotjaGi2g1v0196600_LC.3
– Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC
Domains
11
LotjaGi2g1v0196600_LC.5
– Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O00567|NOP56_HUMAN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC
Domains
11
LotjaGi2g1v0196600_LC.7
– Nucleolar protein; TAIR: AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O00567|NOP56_HUMAN Nucleolar protein 56; TrEMBL-Plants: tr|I1KJ56|I1KJ56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196600_LC
Domains
11
LotjaGi3g1v0511600.1
– Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600
Domains
18
LotjaGi3g1v0511600.2
– Nucleolar protein; TAIR: AT3G05060.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2; TrEMBL-Plants: tr|Q70I27|Q70I27_LOTJA SAR DNA-binding protein-like protein; Found in the gene: LotjaGi3g1v0511600
Domains
18
LotjaGi4g1v0223200.1
– Nucleolar family protein; TAIR: AT1G56110.1 NOP56-like pre RNA processing ribonucleoprotein; Swiss-Prot: sp|O94514|NOP56_SCHPO Nucleolar protein 56; TrEMBL-Plants: tr|I3S8I2|I3S8I2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0223200
Domains
17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 10.00