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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0520300 |
| Transcript ID | LotjaGi3g1v0520300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-40 repeat protein; TAIR: AT2G16780.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O22468|MSI2_ARATH WD-40 repeat-containing protein MSI2; TrEMBL-Plants: tr|I3STN8|I3STN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0520300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93676875..93683334) extracted from Lotus japonicus Gifu genome v1.2.
GACAGTATCAACCCACCTAATGAATCTTAATCCAAATTTTCCAGTGAAGAGGTATTTGAATACCAATTTTCAATGGAACC TCTCTAATTGATTGCTTTTAAAAGGAGAATGAATGTCACCTTCACAACTGTGAAAGCAAAACGAAAAGAGGAAAAAGCAA TTGCATAGCACCAAAAAAAAGTGCAAAAGTAAAAGGATGAGATTTAAGAATGATATTGAAAAAGAAAAAGAAAGGGCTAG AACATGGATGATGGAGCAGATAATGGGCTTTGAGATGAAATTGAAGCCCAGCCCAGTGAAGCCCAAGTGTATCCACTATA AAAACGTTGCATCATTTTTTGGCGCGAGAAAACAAGGGCTTCGAAGCACAGAAAACGAAAAATGGCGGAAGAGCACGAGA ATGCACAGACAGAGGCAGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATTTCTTCATC TCTCACCCTCTTGTATGGCCTTCTCTCACCGTTCAATGGCTCCCATCCACTCCTCAACCCCACTCCAACTCTTCCTTCAA CCTCCACTCAATCCTCTTAGCCACCCACACCGCCGACGACGAACCCAACTTCCTAATGCTCGGCCAAGTCACCCTCCCTG TAAACACATTGCAGCCCATCGTCGCCGCTGATCCTCAAAACCCCATTTTACCTAAGGTTTGTGCTTGTTTCTATTAAAGT TTGCTTGTTTTGTTTATGGGTACCAACTGTTCGATGAAATGCCGCAATGGTTTTACTTGCAGGTGGAGATTACCCGGAGG ATTCCTGTTGATGGGGAGGTGAATCGAGCGCGATCCATGCCGCAGAACGCTGATATTGTAGCTGCCAAGACTTGTAGCTC CGAGGTTTATGTGTTTGATTTTGCGAAGCAACGAGGGGATGGGAATGAGCCTGATTTGAGGTTGAGGGGGCATGATAAGG AAGGCTTTGGCTTGTCCTGGAGCCCTTTTAAGAGTGGGTATCTTTTGAGTGGTTCAAATGACCACAAGGTTTGCTTGTGG GATGTGCCGGCTGATTCGAAAGGGAGCGTGCTTGATGCGGTTCATGTTTATGAGGTAACACAATGTTGATTGTTTGATGC TTGTATGCTGTGCTGAATTGGAATTTCGCCTGATTGGTTGATTTTGCTGCTTTAGTGATAGAATTGAACTTTTGATTGTC ATGTCAGGGCCATGAAAATGTGGTGGAAGATGTATCCTGGCATTTGAAGAATGAAAATTTATTTGGGTCTGTTGGGGATG ACTGCAAGTTGGTAATTTGGGACCTGCGGACAAACAAAGCCCAACAATCTGTCAAATCACATGAGAAGGAGGTAATGTTG TTACTTCAGAATCCTTGCAGTATCTTTTATTGTTCTTTAAGCATGTAATAGAGCAGAAGTTCATGTTTTCTATCAATTAG AATTACCTGAATTTGTGATTGAAGATCTTTATACTTTCTACTGATAGCATAAGATTATGAAAACATTCCCATTAGGCTTT TTGCATGCTATGGGTTTGTTAAACACTGCAATTTGTTTGGACCATGAGGGAATACTGTTTCTTGTACTGTGTTCGATTAT GCCTTCATTTTTGGTAGTTTGTCGCTGTTGTTTAAGTAAAGCTGATAATATTTTCCTGATGTTGTTTTGTACTTTGGCCT TGTCTTCTCTTCTTTTTGACCCTTTGCTGGATTATAATTTTTCACTGACAATGTTATACTCTGCTTTCTTTTTTGAATCA GGTGAACTTCCTTTCTTTCAGTCCATATAATGAATGGATTTTGGCTACAGCATCCTCAGACACCACCATTGGTCTCTTTG ATACACGGAAGCTGATGGAACCGGTTCATGTTTTAAGTAGCCACACGTACGTACTTCATCTGTTATATTGTGTTTTTCTT GGTACTGCTACTAACTTGCAGTAACAATGGCTAGGTTTGCTGGTTAAGTACTTATCTTTGTTGCTCTGTAGATACTCGAT ACCATTTCTTATGAGAGAGAACTGTTAAGTTCTAAGCTTAGGGAATTCCATTATTTTTTTTTCTCACCTCTTTGGTTTAT TCATAATTTACAGAGATGAGGTATTCCAGGTAGAGTGGGATCCTAATCACGAGACTGTATTGGCTTCTTCTGGTGCTGAC AGACGGCTGATGGTTTGGGACATTAACAGGTAGGAACAGACTCCTCAAGAATGCTAAGTTTTCCCCCTCCTTCTTAGAAA ATTGTTACTTTAGTTTGATTTGTACTAAAAGATTATTCAGGTGCACATGTACAAACATACTAGACACTTCTACAAACTGA GTATTAAAATTGGCCCTGCACTTCATGCTTAATTTTCATGATAATTCAGGGTTGGGGATGAGCAGATAGAGGGAGATGGT GAGGGCGGTCCTCCTGAACTACTCTTCTCTCATGGTGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACCAAAACCA GCCATGGGTCATCTCAAGTGTAGATGAGGAAAATTCTCTCCATGTCTGGCAAATGGCTGATAGCATTTACAATGATGGTG ACGACGAAGATATGTGGTATGCTGCTAATGACCAACACTAACCAGACCCAAGCTCGGAGGCCATGCTTTCCATGTCATTG CTTTCAAAGCTTTGTTGTTTTGTTTGAATGTTTTGCTATCTTTGAAGTTTACTACCAAATTTTATGCTAATGTATTGCGA TGGTTAAGAGTTGAAACAATTATGACATAACATTATCATTGTTAAGGCAATTTTTTTCCTTTTATGGTTTAAACCACAAG TATCCTCGTACTGTTCGATATAAATTTCTTCTGTAGCTCACATGTTCGATATAAATTTCTTCTGTCATCTTCTGAAACTT CAGTTTTATATGACATTTTAAATGGTGTTAACTAATTAAATAACCCTCTCCGCAAGTCGATAACTATGACGTTAGTTTCG GCAATATCAAACATTTCTTCCTATTTTGCGCCAACCAATGCTATCCTAATTCATGATGATTCACGAGTTCCTAACAACTA AATTATGGTTATATAGGTGCTTGGTTATTTTAGTGTAAAACGTATCCCAATCTTGATGTCTGAGAACTTGAGACAGTAAG CTATAATGGTGTTAAGTTTACTTCGTCTTGAAACCCCCAATGTGCTGTACTATACTACGTTTCAATTAGCAACTAAATGC GGGGAAATTTTTACAAACTTTATCCCCAACGGTGAACGAACAACGTTATTCGAAGTAAAAGATACAATCATCAATCATGT GTTTTATTCATCATTCCAAGTCCAATATAGGATTGTCAAGAGGCTCTGGAATTAGCGAAATCATTGCTCTCTAAAGGTAG CAAAGTTCCATCTAACCTCCACTTGCGTTCTCAAATTCAAACTCACTTGTTTGTCTTAAATTGTGGAAAACAGAAGGCCA CACGCAAAATCTTCACCTAGACGACAACAGTTCCTTCTGGATATAAACTACAATCATCGACCGATGTCCAGCAATTCTTC CGGATATAAACTACGGTCATCAACCGATGTCCAGCAATTCGCTAAAGACAGAAGTAAATCTACTCAGAGGAATAGAGATG AAAAATATAAAATCATAAAAGCAACGCCGTCGTCAACCGCACAAGCCAGCTTTATTGTTTCACTCACACAAGAGTTTATA TTACACAAAATGACATTGGTGTCTCACCTGCCCACAGCACAAAGCCACAAAGTACCGAAAGATGAAACACAGCCCCCCAT CATCCCCAAGTTCTGTAATCCAGCAATAAAAAAATTGCGAACTTAGAAAACATGAATCACCACTTAAACAGCATTTGCAT CAAACGGAACAAAAAACTAATAAAATAATTAGCAGATTTAAAATTGTATCAGCAGAAAACAATTACGATGTCAGTTTAAG GCGTAATCAAAACACCATGAAAAAATTGCATTGAAAAGCACCAAATTCGCCTCAGCCATAAGCTATGCTGACTACTGATC AACTCCTGCTTTTGCTTAATAAAACATCTATCAACTACTAGCCCTCCATAGTAGAACAGCCATCCAGAGCTCGACAATGC AGTAGCGGGTCAAAAAGAGAAGATAATTTACAAAAATGACTTGATGGATAGCTGATGCTGCAACTGGTAACAAGTTATTC GAAGGAGATATTACCATGTCAACAACGAAAACCACCACTTTATTAATTCTTCAGCCCGCTGTTGCTGCACGAGATCCCCC TAATGTATAAAAGTAAGTCCATCAGATCACTTAGCAAGATAAGGACAAAAAATATGCAAATTCCATGTCCTAAAGTCATT AACATCAGATTCAATCCAATTAGAAAATGGATAACACAGACGAACACCAAGACAAAACAAAACTAAGAGTGGGTGGAGAG ACCCACAGTGACATCAAGTAGCAACTAGCAACGAAGCCTCCCGACTGAGGGAAAATGCAACCACACTTTGATGGACTCAA TCTCAATTCTTTTGGAATGGGGATAACCAGATAAGAAATTAATATTATCATATTAAAAAAAAAGATTCAGTCTCAGCCTT CCTTGTTAAAGTTGGAAAGAATGTTAACTCATACATGTATATAGCATCATGTAGTTTACAAGATTCAGTGAGACTGGTAA TAACTTAAAAATGTGGCACTCTCACATCAGCTAACAATCATCCTATATATAAAATCTAGCAATCAGATTTCAGCACTAGA ACTTCATGACAATTATGAATTTTAGCAATTAAACATAATGCAAAAAGAAAATAAAATAAAACTGTTACTGTATGTGTATG AACATCTGATTTCTTAACTAGTGACTGTTTAGGACTTAACAGAAAACAAGCAGCAAGTCACATTCAGAGCAAGCAATGGA TGCTTCATCCATTTTGCACTCTATTTCTTTCTCTCAAATCTCAGGGCTTTCTATATTGAGCGTTTACAAGGCCAAAACTA GATAACCAAACACACAATTTGTACTAGATCAGAGACAATGACCAAACATTCTAGGCAGAACAATCATCAAATCATGCACC AGCAATTTAGTGTCCCTTCGTATATGCGTTTTTCTCAAAGCAAGTAATTCTAGAATCAGAAATTATGCGCGTATATGGCC TCTCACACGCAGTCACAAACATATCCTATAATGAAATCAGGTATGAATAAATATGAATTAAGCACCAAAATTAAAATCAG AAATTGAGTGCAATCAATCAGCCATCAAGTGACCACACCTTTTCTTTTATTAGATGGAGCAGAGTTGACATTAGACACAG CCTGCCCACCTCCACAACCACGAAGATCCTTGAGCCCCAGATTCTGCCCTGCAAGACACTGGATGCCCTCAAACTCACAC CCACCAAACCCATCCCCGTTCAGCGACGCACCGCCTTCAGCAATCCTCCCATCTTCTGATTGAAGGCAATACACCCGGTC TTCACACTGCAAGTTGCAAGGGTTCATCACATAAGAACCGGGCATATTCACCCCCGCCATGTTCGAATTATTCGATTTCT GATAAGGAAACGACCCAATCTCCCCTTCAATCCTCCCCCTGATATCAACCAACAAACACTTCAACCTCGCAACCTCGGCC TCCAACACAGCCTGCCCCTGCAGCTTCCTCATCAAGTGCTGGTTCAAAGCCCTCAGCTTAACAACCTCATCCTCCAACGA CGCAGCCCTCGCCTTCTTCTTCTCGCGGTACTTCCGAACCGCTTCCTTATTCCCAATTGGCCGTTTCTTGCTACCCTTCT TACCACTGCTTCCACTGTTATCCCCATTTCCATTCTCAGCAGACTCAGCAGTGTCATCAGTGTTGTTCACCTGATCCTCC GAAGTCACAGGCACGATCTTGGTGTGAACATGATAACATGTATGGGTGTGTGAGAAGTCAGGTCCAGGAGGGTTGCACGT GTGGGTATGGGTGCAACCGTGCGTGTCCTTGAGAAGCTCGTCGAAGAAACTGTCCATGGAACCGCTGCTGGGAATCTCGC CGCCAATGTTAGGACTCGAGAACACTTCATGGTTGGAGAAATCGAGCTCGCCGTCCTCCATCGCAACCAAATCCGCCGCC GCCGCTGCAACAACCACCACCTGGTCGGAAAAAAAACACCGTTCGTGAATGGGAATTTTCTCCAATTGAATAGGAGCAAA GTGAAAGGGTTGAATTGATGGAGAAATTAAGCGTGATTGAATCGAATTGGAAACCCTAATTGAGAAAAAAAATGAACGTA CCAGAAGAGAAGACAGAGGAAGAAGAAGCGATAGGTTGAGATGAGAGATTGATTCCACGATGATTTCTTTTTCTTTTACT TTTTGGCTTCCTTTCAACTCAATCGCTCTCAATTTATTTATACGTGTTTCAACTTTCAAGCAATAATAATGTTATTTTCT CAGGTATTGAATGAATCAAATTCAATAATTCCCAATGGGGGCCCCAAAAACTTTGGTTCC
CDS sequence (LotjaGi3g1v0520300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAGCACGAGAATGCACAGACAGAGGCAGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCT GTTGTACGATTTCTTCATCTCTCACCCTCTTGTATGGCCTTCTCTCACCGTTCAATGGCTCCCATCCACTCCTCAACCCC ACTCCAACTCTTCCTTCAACCTCCACTCAATCCTCTTAGCCACCCACACCGCCGACGACGAACCCAACTTCCTAATGCTC GGCCAAGTCACCCTCCCTGTAAACACATTGCAGCCCATCGTCGCCGCTGATCCTCAAAACCCCATTTTACCTAAGGTGGA GATTACCCGGAGGATTCCTGTTGATGGGGAGGTGAATCGAGCGCGATCCATGCCGCAGAACGCTGATATTGTAGCTGCCA AGACTTGTAGCTCCGAGGTTTATGTGTTTGATTTTGCGAAGCAACGAGGGGATGGGAATGAGCCTGATTTGAGGTTGAGG GGGCATGATAAGGAAGGCTTTGGCTTGTCCTGGAGCCCTTTTAAGAGTGGGTATCTTTTGAGTGGTTCAAATGACCACAA GGTTTGCTTGTGGGATGTGCCGGCTGATTCGAAAGGGAGCGTGCTTGATGCGGTTCATGTTTATGAGGGCCATGAAAATG TGGTGGAAGATGTATCCTGGCATTTGAAGAATGAAAATTTATTTGGGTCTGTTGGGGATGACTGCAAGTTGGTAATTTGG GACCTGCGGACAAACAAAGCCCAACAATCTGTCAAATCACATGAGAAGGAGGTGAACTTCCTTTCTTTCAGTCCATATAA TGAATGGATTTTGGCTACAGCATCCTCAGACACCACCATTGGTCTCTTTGATACACGGAAGCTGATGGAACCGGTTCATG TTTTAAGTAGCCACACAGATGAGGTATTCCAGGTAGAGTGGGATCCTAATCACGAGACTGTATTGGCTTCTTCTGGTGCT GACAGACGGCTGATGGTTTGGGACATTAACAGGGTTGGGGATGAGCAGATAGAGGGAGATGGTGAGGGCGGTCCTCCTGA ACTACTCTTCTCTCATGGTGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACCAAAACCAGCCATGGGTCATCTCAA GTGTAGATGAGGAAAATTCTCTCCATGTCTGGCAAATGGCTGATAGCATTTACAATGATGGTGACGACGAAGATATGTGG TATGCTGCTAATGACCAACACTAA
Protein sequence (LotjaGi3g1v0520300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEHENAQTEAEVEEEFSVWKKNTPLLYDFFISHPLVWPSLTVQWLPSTPQPHSNSSFNLHSILLATHTADDEPNFLML GQVTLPVNTLQPIVAADPQNPILPKVEITRRIPVDGEVNRARSMPQNADIVAAKTCSSEVYVFDFAKQRGDGNEPDLRLR GHDKEGFGLSWSPFKSGYLLSGSNDHKVCLWDVPADSKGSVLDAVHVYEGHENVVEDVSWHLKNENLFGSVGDDCKLVIW DLRTNKAQQSVKSHEKEVNFLSFSPYNEWILATASSDTTIGLFDTRKLMEPVHVLSSHTDEVFQVEWDPNHETVLASSGA DRRLMVWDINRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVDEENSLHVWQMADSIYNDGDDEDMW YAANDQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 396 | 396 | 2.0E-201 | – | |
| PANTHER | 1 | 396 | 396 | 2.0E-201 | – | |
| Gene3D | 1 | 400 | 400 | 1.7E-124 | ||
| Pfam | 16 | 86 | 71 | 2.6E-22 | ||
| SUPERFAMILY | 108 | 386 | 279 | 2.17E-50 | ||
| SMART | 152 | 192 | 41 | 1.0E-5 | ||
| Pfam | 159 | 192 | 34 | 0.13 | ||
| ProSiteProfiles | 159 | 394 | 236 | 31.191 | ||
| ProSiteProfiles | 159 | 193 | 35 | 11.11 | ||
| ProSitePatterns | 179 | 193 | 15 | - | ||
| PRINTS | 179 | 193 | 15 | 1.4E-5 | ||
| SMART | 201 | 241 | 41 | 2.9E-4 | ||
| Pfam | 205 | 241 | 37 | 0.0055 | ||
| ProSiteProfiles | 208 | 250 | 43 | 10.909 | ||
| SMART | 244 | 284 | 41 | 1.9E-4 | ||
| Pfam | 248 | 284 | 37 | 0.0017 | ||
| ProSiteProfiles | 251 | 286 | 36 | 8.604 | ||
| PRINTS | 271 | 285 | 15 | 1.4E-5 | ||
| SMART | 288 | 328 | 41 | 1.2E-7 | ||
| Pfam | 290 | 328 | 39 | 5.6E-5 | ||
| ProSiteProfiles | 295 | 330 | 36 | 13.349 | ||
| ProSitePatterns | 315 | 329 | 15 | - | ||
| PRINTS | 315 | 329 | 15 | 1.4E-5 | ||
| SMART | 345 | 385 | 41 | 0.068 | ||
| Pfam | 349 | 384 | 36 | 0.0088 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0520300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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