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LotjaGi3g1v0525200.1

Overview

Field Value
Gene ID LotjaGi3g1v0525200
Transcript ID LotjaGi3g1v0525200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA repair protein XRCC2 like; TAIR: AT5G64520.5 homolog of X-ray repair cross complementing 2 (XRCC2); Swiss-Prot: sp|Q682D3|XRCC2_ARATH DNA repair protein XRCC2 homolog; TrEMBL-Plants: tr|A0A072UXF4|A0A072UXF4_MEDTR X-ray repair cross complementing 2 (XRCC2)-like protein, putative; Found in the gene: LotjaGi3g1v0525200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:94210288..94217945) extracted from Lotus japonicus Gifu genome v1.2.

ATTATTTTAGTGTTTTTCCATGAAACAATCATTTTTTAGTCGGGTAGGGTTAGATTCGTATTGAGAAGAAGGTAGCCATT ACCGCCAAGTATAATAGAAATGAGCGGGAACGTGTATATGAAAGACTAAAAGCGAATGAGAATTTGAGAATTGAGATTCA GAAGAAGAAATGAACGAGAAAGACAGAGATGAAGAAGTTCAAAGGTGGATTCGCGTCGACGAAAGCGGCAGTGACATGCT ACGCAGAGTCCAGAGAGTGCGACCTTTCTTGCTTCCACCACCGCTTCACCGTGTTCCTCTCCGCGCCGGCAACGTCCTCG AACTCCTCGGTCCCTCCCCTTCCGCCAAAACCCACATCCTCATTCACGTCAGTAACCACTTCTCCCCTTCCTTCATCGCA ATCCCCCAATTTCACTCCATTCTTCAATTTCAGGTCGCAATCAGTTGCATTCTTCCCAAACACTGGAAAGGAATCCACTA CGGAGGTTTCGACCATGCCGTGCTTTTTCTTGATCTCGATTGTCGATTTGATATTCTGCGTTTCTCACAAATCCTCATTC ATCGGATCACTCAACCTCGCCATCAGGGTAACCCTATTTCCTTCTTGCGTTTCGAATTGTGAATTTTAGGGTTTTTCACT TCCATTTCTTGTGTTTGGTATGATAAATTTTGCTATGCGCTTTCTAATGGAACAGGGGAAGAAGCTGGTGAGAATTATGA TAAAGCTTTGTATGATATGTGCATGACCCGTTTTCTGTATGTTCGTTGTTCCGACAGTTTCGAGTTTCTTCAGACTCTCA AGGTAATGGAATGAGTTTCCTCTCTACACTGTTTCGACAAACCTGTTTGGAAACAAACCAATGAACACTAATTGGGGCTT ATTTTGTGCATTTTTCTAGTAGACATTAAGAAGCTTTTAGAGAAAATGAATGTTCTGGAACTGAATATGTAATTGTATTC TCAAAAAACAATATAGTTAGAGTGTACTCTAACTATCGCTATCTAATTCTATCGAAACTGACAGCTATAAGTTTAAAGAT CCAACAGAAACTCGAGCTGAGTCAGGTGCTCTAGAGCCTAATACAAACCATCAAATCTTAACAATTTTTTAACTCCTGTT TAAGCATCTTATATCGTTTGTTCTGCAACAGACATTACATCGTCGCTTAGAAAGGGAGAAAGAAGTTCACCTGCTCATGA TTGACAGGTTGGTTTCTTCTTGCTTTTTCTTGAAAAAGAATTATATTTACAGCTTGCTGAGGTGGGAGTGGTTGGGTAAA GTTAGCAGACTTGGGTAGTTAAGAGTGATCAACTTCATTATTTGATGAACCTGGTATTGTTTTTTTTTGCGAAAGAACCA CATATCTATATAACAACTTAGTTATTTTCAAGCCTACGATCTTTCTATATCCAATTGATACTTTAATTGCCACTGCTTTG TTGATTATGATGGTATTGATTTGACTCCAAATTTATTATATGAAGACCTGATCTGATGTAATAACTAATAGGTAAACTTT AAATGATCAAACTGTGTTTGACTATTTACAGCATTGGGGCTTTTCATTGGATGGATCGTGCATCTATATTCTTATCTCTA AAAGAAAATAACAGGTAAGTATTACTTGTGTTTTCTAGTGGATGGAATTTGTCTCTTTTGCAGTTAGAGTTCCCTTAGGA TCAATTTATATTAAGAATTCTCAAATATCAATTTGGATCTCTTTGTTTTTTCAAGAAAGAATGAAAACTTAGATTGAAAG TGAGAGAAAAGATAACACTAAACGGAGGTTCTCTTAATAATAGCACCTATCTGTATCATTGTTCTAGATATATGTTGCTT TTAACTTGCAGATGTTGTATGTAATACAGGAAAAAACTTTTTCTTCAAAGTGTGTCAGAAGCTGTAGTTCAGGATATTAA AAAGCTTCTTCAGGTGCATCCCATGCTCGTTATAGCTACAAAGTCGGTGATTTTTGGGAATAGATATTCTAAAGCTGCAA TCGAGGTCAAAGGGTGAGTTCTATGATGGTTATGGGAATCTATTTTTAGATGATAGAGTATTGAAAAGGTTCTTGATTCC AACCTGAAATCTTTTATAGAAGGATTATTATTTTTTATTTGGTACATGTTAAATTTGATAAAACCTTCGTGGAAAGAATA TGACAAACTATTTAGGAGAGTTGTGAGATAAAGAAGATTTGACCAACTTCAAGGGTGATTAATGGGAGGGTTCATTCTAG TTGATTGAGTGCTGTATATTAGGAGGAAGATCTAGGAGTAATCCATTGACAATTACACTATTATTTACTCTTTCCTTCAG TATAAACTGCAGGTATAGGCATAGTGGTAATGTAAGCTACTAAGCTTCCTTCCTTTTTACAGTGTCTTCTTTTCTCTATG TAAATCTGTCTCCTTCTACCGCGGTAGCACCTCTGTGCTTGTATGTTCTCTATCTAAAATTTAGACAACTAAGTGAAACC CAATTGACTTTATAGTTTATTAGTGATTTATCATGCCCGTTATGTTTTCAACATCTAATTAATTTTGTTGTCATTTTGCA AACCATCCACCAGTCACTCATAAATCGTAAGGCAGTACTCTGTGTTCTAATCTCAATACTGTTGTACTACTTCATGATTT TATGTATGATGATAACCTAATACAGGAATTTTATGAAAAATAATTGGGAAGAAAGAAGTTCAAGAGGTGTAACGAGAAAC CATCAACACTTTGAGTATCGTGAGTACATGCCTTCTGTCTGGCAGGTAAAGGTTTTGTTATTGTTATATCACATGCATGC ATACATACATGCATGTGTGTTAGGCTGCTAGCATGTGCAAAGGTTCTTGTAAAATCTTAAGTTTAGGTGGTCCAAAAAAT GGTGTTACATCTGAAATATTATTAAAAATATTTATCAAAAGTGGAAGAGCATCAGACAATAATATAGAAGTAGAGGGAGA GAGATAAGAAAATATGAGAAAGTGAGTGTAATTATCTGAAATAATTTTTTGATGATTGTAAAAATAACCTGATGTCTTTT ATTAATTCACTGAGAAACATGCCATGTAAAATGAACTTATTAATGATACGAACATCCTTAGGGAACATTTTATGATAGAA AACTATGCAGGGATATCTTTATTTGTATTATAGATAAGGTTTTAGATAATTCTTATAGGATTTTGGATGGTCAACAATCT CACTGTTTTCTGTTTATTATTAAATTTTATTGTGTGGCAATATGACAATCATTAAAACATGGGAGTTCTTTTGTTCAGTT TTTATCTTTCAAGTGGAGCCTCAAGTAACCTTCTCAAGTTAGTTAACTGTAATTTTTTGGAGATGTAAAGCAGTTGTTTA CAGAAAGTGCCTTTTCTAAATAATTAAGGTTGAATCTCTCTTTCGGAAATGAGATACTGAGCATGGCTTAAAGGTGGGTG TTCTTATGTTCTCCCGGGTAGATATAAGGAGGCAAAATCCCATTCCTAATGTCGTTTTAGTTTCGTAGTTTCCAATCTAC ATGCCTTTTTTCTTCAGTATTAAGATTTCTAATTTGCTGTTTGTCCCTTCAACTGTCACAGTCCTTTGTTACACACAGAA TACTTGTACGTTCTTCAGGTTTGGTCCCATTGCTACTAATTACCATTGACAATTGCTTTTTCCATCAACCATGATTCCAG CATATTCTTTGCTTTTCAGATGATCATTCTATTACAGGCAGTTGTCAAAACTCCTCATTCTATTTGTTGGAGTGGTTATT GCCAAGATTGAGTTTTCCGGACAAGATTGTAGTGAAAGATGTAAGAACATTATGTTCAGATCATGGTTTTTACATAATTT TAAGGTAATCAAACTTGGGAATTCTATTGGACTCTGTTGGTTGTTTTTTTATTGAACTTGTAGGCCGGTGTTTTTGTCGA TTCATAAAGCATATTTGCAGAGGAATGTCCATTTGTGATCCATTACTGCCTCTTTCAATTGAGGGTAACGAAATTCTTCA TTTCTGAACTTTCTACATATGTGCTCATCATTATTACTTAAAATAGCAGTCTCTCATTTGCATTCTGATTTATTGTTTGT GTTGCTAGTTGATGTGATACAGATTCAATTAAAGCTCTTCAGCAAAAAAAAGTATCAAAGTCATTGTCAAGATCCATTTT CATCTGACATTAACTAGCTCTTTGTACATTTAAAAAAAAAAACTAGCTCGTGTATGCTACAACAGAAAATGAACAATGTT ATATTTAACTTTGCTGTTACGGTAAGATTGACCGTTCTTTTAATCCTATACAGCAGGACAACAGCACTGACTGAGGATAT TCAATCGGGAGCACCCGAAGTGTAATTATTGGACAAGGTACAATCATGTGAAAGAAACTCCACTGGAAGATTCGTGAGCT TCCATGAGATATTGACGGGTGAGAGGATTTGTACTCCTAGATCACATGAACCCATTTTAGATTTGGCATCATCAAAAGAA GGACAAGGACCTAATATTGCCAACCTGATTTAGGAAAACATCTAGCATAGCAATCATGGTTTCTAAATTCTATATGCCTA CCAAATCCTTTTCTATTCGTGATTTTACTTTCATGAGTAAACAAAATCATTGAGACCCATAGACAGGTTTAAATTCTGAT GCTTCTTATCATAAGTAGATCCTGTACAAATATTACATTCTTAGTATAAGAAAAATGTCTGTCCCTCAATTATTATCTTG TCATCCTAAAATAGAACTACCTTTCCTTTTAAAGTGGTCATTGCATTTTTGCTTATCTGTTACGGACCAATTCTTTTAAC TTTGTTTGGTATGTCTTTTTAGGATGCACAGAAAAGGTTGGGACTTGGAAGGATGAAGTTCATCCCATGTTTGGCAGCAT GTTAGCTAAAAGAAGTAAATGATTAGGGGTGATAGTGATAGAATTTGTGAGCCCCACCACTTTCTTATGTATGTTCTTTT GGAGGGAAAGGAAGTAACTTTGGGGTTTTAGACTTTTAGTACAAACTTATATGCATTTTCACTTCTTTTTTTAAATTTTA TGAAACTGACGGAATAGAAGTGTTGTTTTGTTCTCATTAGATGATAGTATACCGAATAGGAGGGGTGATTATTTCTTGTA TCCAATAATATTTGTTGTGTATTTGTGTAACTGCAATAATGAAGAACCAAATATATTTCATTTCTTCTATCACGTTGAAA TTCTGAACCAAATATATAATAGAAGTAAAACTACAGCTTTTTACAATTCTAGAAATACCAGTTTATGATGGATAGTAATA AACAGGTAACTGGAGGAATATATTCAACACAATCTTGGCGAGGCTCTAGCACGTGCAGGACTACGGAAGAGATTATGGCT AAACAACTTTGAAATCTGACCATTCATTTCTTTGTCTAAGCTCTCCAGTTCTGCTACTTTCCATTGCATTCTCTGAAGGT TTGCTCTATCTTTATTTTCTCGGGAGAAGCTATCTCTGTTGGCTTCATTGTACAAAAATATTTTGGAAGGCTTCTTCATC CTTGGACTCTCAGTTACAAAGTCGCTTGTTGGAATTTTTGATCCTTGAGAAATAAGAGCCTCCATTGCTATTCTTGGAGG TATTCTGGGGTTCTTGGCCAAATCTTTACTAGCTTCAAAGCTGAGTTTACTGCAATTAAGGCATCCACACAATCTCGATC TTTCCTCAAATGTCATAGTTGGATGAGACTGCAAAACATTATTGGTTTCAAAAATGAGAAATTTGCATAATATTATCCCA GTTCCAAAATCTGGTGGGATGAAAGACAAGAATTTTGTTACAACAATACATTCACACTTCACTTTCTTGTATAAGAAAAG CAATAGAAAAGGGCATTTTATATTCACTCACCTCAAGATAGATGTCAATGGCTTTGTAGACACCATCAAAGTAATCCCTT GCAGGGTCTGGCAAGCACTCTGCAACTCCAAGAAATTGAGAGATCTTGAGGTTCTGGTCAGGGGATATCTCTCTCAAATA CTTGTCAAGTAATCTACCAACCCTTTTCATCTTCTGTAAATACAATCCATCAGAGCCATTGCTATCAGCAAATAGTCTAG CCAACCTTATCACCAAATCAACATCATAATGAACTCCCATATCATGCCCTGACACCAGAAGATCATCCAGTGTAGCCTGC TCAAGCATTCCACCAATCAATTTCTCCAATTCAGTTCTGCAACCACTACTCATCCCAAACCCAGATAAAATCCTCAATAC CCAAAAAAGACCTCTGCAAGAGAACTTCTTCCTACCAACAGATATTACACCATAAGCAGCTGTTTCTGCAAGAGCAGCAT ACTCACTTCTGTTTCTACAATTAACCACTCTGGTTTGAGTAGCTGTTTTCAGATAAAGCAACAGAAATCTTGTGAGGATT AAATTGTTGTTATCATCTTTGTATGCTCCAGCCGTCTGAAAGAGCTTCTCAATTATATTTGGGGGTAAAGTTGCCAAATC ATCAAACCACCATGCTTTGCTATGCAAACCTGACTTGTTTTTAACTGGGGTAGTTTGGGATGAAGAAGAGAACCTCTTGG CAGAATTGCTTTCCGGCGAAGATGTTAATGACAGTGATGATGATGAAGAGGAGTAGCGGAGAAGGTTGGAGTCTGAATTT TGGGAAATCTTTGCTAAGACTGCAGAAATGATCTTCTCCAGGAGACCATAGTCATCTGCATATGTGTAAAACCACTGGCA ACTAATGAGGCTTACAAGTACATCATTCCATTTCCAGTGATAGATTTCTTCAAGAAAAGCTTCTGTTTGCTGCAAGAGAT TGTTGCTGAAAACCTTCTCAGTCATTCCAAGATAAACAGCACTGCAATGGAGGTGAGGCACATTAGCTGCAGTGATTGGT ATTTTCCCATCGTTGTAACAAAACCTTGAAACTAGCTCAAACCCATCTGGGCCTCCAGGGAAATCATTGATTTTGATCCT CAAGTCCTTCACTTGAAACCTTCTCTTTTGATGATTCATGATCTTCTTCACCTTTCCACAGTATTTTGAAATAATCTTCT GCAAAACAAATGAACTAGAGTCACCTCACATATCTGATGTTTGAAACTTTTCTTTGAAATATCTAACTACATCATTCAAC AAATATTCAATGAAAATAATTTGAATACCTCTTTCAAATGGAATATCTGCTGACCATTAATGTTGATTTGCAAGTCACAA GGCTTCACCATAGCTATTTCTGCATTGAACAAAAACAGATAAAATTGTGCTTTTATATGCAGAGAGATTATATGTTGATA TGGTAAGCTCTATTGTTTTTATGTGGCAATAGGGAAACATCAGACCCCTCTATTTGATTTGAATGGTTTCTGATCTCACT GATTTTATTTATATTTAGGTGTAGATCTCTCTTATTTATTTTGTTTGTTATGGAATCTGTTCTCTGCCGTGAGTCTACAG TGATAATTATTGTACTTTAATTTTTAAGTTTTTGGCTATCTTATGACAGATCCCATGTATATATGTTCCAATCTGTGGCA ATTTTTGGTATTATTGTAAACGTGGAGCGGTGGAGGCATAGTAGCTCATACACTATAGTATTTCGCCAAATTGTCCTGTT ATGTAGCCAACAAGTTGTTCTATCTTATATATGAAATAAAGTATGAAGGAAATCATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0525200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACGAGAAAGACAGAGATGAAGAAGTTCAAAGGTGGATTCGCGTCGACGAAAGCGGCAGTGACATGCTACGCAGAGT CCAGAGAGTGCGACCTTTCTTGCTTCCACCACCGCTTCACCGTGTTCCTCTCCGCGCCGGCAACGTCCTCGAACTCCTCG GTCCCTCCCCTTCCGCCAAAACCCACATCCTCATTCACGTCAGTAACCACTTCTCCCCTTCCTTCATCGCAATCCCCCAA TTTCACTCCATTCTTCAATTTCAGGTCGCAATCAGTTGCATTCTTCCCAAACACTGGAAAGGAATCCACTACGGAGGTTT CGACCATGCCGTGCTTTTTCTTGATCTCGATTGTCGATTTGATATTCTGCGTTTCTCACAAATCCTCATTCATCGGATCA CTCAACCTCGCCATCAGGGGGAAGAAGCTGGTGAGAATTATGATAAAGCTTTGTATGATATGTGCATGACCCGTTTTCTG TATGTTCGTTGTTCCGACAGTTTCGAGTTTCTTCAGACTCTCAAGACATTACATCGTCGCTTAGAAAGGGAGAAAGAAGT TCACCTGCTCATGATTGACAGCATTGGGGCTTTTCATTGGATGGATCGTGCATCTATATTCTTATCTCTAAAAGAAAATA ACAGGAAAAAACTTTTTCTTCAAAGTGTGTCAGAAGCTGTAGTTCAGGATATTAAAAAGCTTCTTCAGGTGCATCCCATG CTCGTTATAGCTACAAAGTCGGTGATTTTTGGGAATAGATATTCTAAAGCTGCAATCGAGGTCAAAGGGAATTTTATGAA AAATAATTGGGAAGAAAGAAGTTCAAGAGGTGTAACGAGAAACCATCAACACTTTGAGTATCGTGAGTACATGCCTTCTG TCTGGCAGTCCTTTGTTACACACAGAATACTTGTACGTTCTTCAGATGATCATTCTATTACAGGCAGTTGTCAAAACTCC TCATTCTATTTGTTGGAGTGGTTATTGCCAAGATTGAGTTTTCCGGACAAGATTGTAGTGAAAGATGCCGGTGTTTTTGT CGATTCATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0525200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNEKDRDEEVQRWIRVDESGSDMLRRVQRVRPFLLPPPLHRVPLRAGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQ FHSILQFQVAISCILPKHWKGIHYGGFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFL YVRCSDSFEFLQTLKTLHRRLEREKEVHLLMIDSIGAFHWMDRASIFLSLKENNRKKLFLQSVSEAVVQDIKKLLQVHPM LVIATKSVIFGNRYSKAAIEVKGNFMKNNWEERSSRGVTRNHQHFEYREYMPSVWQSFVTHRILVRSSDDHSITGSCQNS SFYLLEWLLPRLSFPDKIVVKDAGVFVDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46644
10 67 58 4.0E-112
IPR030547
Gene3D
G3DSA:3.40.50.300
42 323 282 5.2E-26 –
SUPERFAMILY
SSF52540
44 203 160 5.57E-11
IPR027417
PANTHER
PTHR46644
87 346 260 4.0E-112
IPR030547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000724
Biological process Double-strand break repair via homologous recombination The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
Subterm of
GO:0005657
Cellular component Replication fork The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0033063
Cellular component Rad51B-Rad51C-Rad51D-XRCC2 complex A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0525200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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