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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0525500 |
| Transcript ID | LotjaGi3g1v0525500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94231458..94233397) extracted from Lotus japonicus Gifu genome v1.2.
CGGTTCCAACAATTAGGGTTTTTCTGAGTTTCGCAACGCCACTCCGAGCACAGAAGCCGCAGCAACAATGGTGAGTACTG TAGGGTTTAACTTCGCAGCCGATTCAATCTCATTTCCGCTTCGTAACTTGCATTCATCGTTGTTTCTTGATTTCGCAGGC TCCAAAAAAAGGTGGCAAACCAGTAGCAGCTTCGAAGAAGAAAACTGTATGTAACTTCCTGAAAATGATTCTCAATCGCG ATCCATTTTCTGTGATTATTTGTTATCTGATTTCTTGTTTTTGAAATCGCAGGAGAAGGTTACAAACCCGTTGTTCGAGA AGCGTCCCAAGCAGTTCGGAATCGGAGGGGCATTGCCTCCCAAGAGGGACCTTACCCGGTTTGTGAAATGGCCTAAGGTT GTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCT CGACAAAAACCTCGGTTAGACAAATTTCACTAAATCTCTGTATCTGTTTTTTCAATTCTCGTGAAATTAATGTTGAGAAG TTTTATTTGCTACATAGAACATGTTAGTTATATTAATTTATGATTGCAATGCTCTGTAGTGTTCCTTAATTTTCAGACAA TTGGATAGTTACAACTTACAATATCATTTCCTAGGTCTATAGAAATTTTAATTTGAAAAAAAACCTGCGTTGTATTGCTT TGAAGTATTCAATAATGTTGTCAAGAACATGCATACTTTAGATTTCAGACTAACTATCATTATTGGAGGTTGGTGGCATG CAAGCATTAGTTATTTGGCTCTTGTTGTCACCAACGGCGCTCTGTTCTTTATGTGTTACTCTGTTTCAGGAAACTTTTCG GTACTTCTGTAGTATTGAAGACTCGTATGCTTCTTGTTTTTATGAAGAAATCATAAAAGAGGAAAAACTGATCTGAAAAA GACTGGTCACTTGGGTCATTATGTTAGTGGAAGGACTGCATACTATAAGGATGCCGTAGATTTTTCTGTTTTTATGTGCT TAATTATCTACCTACTGTTATGCAACCTTTAATCTATTGTATTCAAGTTTTGCTACTTCATTTTGTTTCATGATTTTATT TTTTAATTGCTATTCTCATCTTCAGCTACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAA GAAAGAGCGTCTTTTGAAAAGGGCTCAGGCTGAGGCTGAAAACAAAACGGTTAAGACTGAGAAGCCAATCAATGTGAAGT ATGGGCTCAATCATGTTACCTACCTTATTGAGCAGGTTGTTGTCAATTTCATCATTGTTTGTTTGCACTTTTCCCAATTC TTTGGTAACGTTGATGAATGGCTTGTTAATCTATTTTTTCCTTGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGAC GTTGACCCTATTGAATTGGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAA GGCACGCTTGGGATCGGTAATTTTTTATTTGATCTCTACATTGTTTTTGTCTGAGAAATTTCTGTCGACCTGAGCAAAAT GGCTGATTTAATCTTCTTTATTTTCAACAGATTGTCCACAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAA CGAAGATAAATTGGAGTTCAGCCGAGTCTTGGAAGCTATCAAGGTAATGTGGAACTGAATCATTCTTCCCTTTCTTCTTT TAATACTAGTAAAAAACTGAACTCACTGTGTTTTGGCTTCATTTTCAGGCTAACTTCAACGACAAATATGAAGAGTACAG GAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCTAAAACCAAGGCCAAGGAAAGGGTTCTTGCCAAGGAGG CTGCTCAAAGGATGAATTAG
CDS sequence (LotjaGi3g1v0525500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAAAAAAAGGTGGCAAACCAGTAGCAGCTTCGAAGAAGAAAACTGAGAAGGTTACAAACCCGTTGTTCGAGAA GCGTCCCAAGCAGTTCGGAATCGGAGGGGCATTGCCTCCCAAGAGGGACCTTACCCGGTTTGTGAAATGGCCTAAGGTTG TTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCTC GACAAAAACCTCGCTACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAAGAAAGAGCGTCT TTTGAAAAGGGCTCAGGCTGAGGCTGAAAACAAAACGGTTAAGACTGAGAAGCCAATCAATGTGAAGTATGGGCTCAATC ATGTTACCTACCTTATTGAGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGACGTTGACCCTATTGAATTGGTTGTC TGGCTTCCAGCCTTGTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAAGGCACGCTTGGGATCGATTGTCCA CAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAACGAAGATAAATTGGAGTTCAGCCGAGTCTTGGAAGCTA TCAAGGCTAACTTCAACGACAAATATGAAGAGTACAGGAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCT AAAACCAAGGCCAAGGAAAGGGTTCTTGCCAAGGAGGCTGCTCAAAGGATGAATTAG
Protein sequence (LotjaGi3g1v0525500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKKGGKPVAASKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKVVQIQRKKRILKQRLKVPPALNQFTKTL DKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAENKTVKTEKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVV WLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQA KTKAKERVLAKEAAQRMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 11 | 257 | 247 | 2.4E-153 | – | |
| MobiDBLite | 11 | 25 | 15 | - | – | |
| PANTHER | 11 | 257 | 247 | 2.4E-153 | – | |
| PRINTS | 29 | 46 | 18 | 7.9E-68 | ||
| PRINTS | 46 | 63 | 18 | 7.9E-68 | ||
| Gene3D | 50 | 233 | 184 | 1.3E-86 | ||
| PRINTS | 66 | 85 | 20 | 7.9E-68 | ||
| SUPERFAMILY | 88 | 229 | 142 | 1.14E-33 | ||
| PRINTS | 90 | 103 | 14 | 7.9E-68 | ||
| Coils | 98 | 121 | 24 | - | – | |
| Pfam | 115 | 205 | 91 | 1.8E-25 | ||
| PRINTS | 124 | 144 | 21 | 7.9E-68 | ||
| PRINTS | 128 | 142 | 15 | 2.6E-23 | ||
| PRINTS | 147 | 160 | 14 | 2.6E-23 | ||
| PRINTS | 163 | 173 | 11 | 2.6E-23 | ||
| ProSitePatterns | 166 | 183 | 18 | - | ||
| PRINTS | 173 | 187 | 15 | 2.6E-23 | ||
| PRINTS | 185 | 209 | 25 | 7.9E-68 | ||
| PRINTS | 217 | 237 | 21 | 7.9E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi3g1v0525500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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