Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0525800 |
Transcript ID | LotjaGi3g1v0525800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94247003..94251066) extracted from Lotus japonicus Gifu genome v1.2.
AGATAACAAGTGTACAATTAAAAATAAAAATTAAATTAATGTTAATGTGTCCTTTTTTCTTGTTGGTACATAGGAAAATC GATTTTTTTTTTTTGTGGCTAACGCCCTAATTCTTAAGACATGATGGAACGGACCGGTCTAACCAAGCCCATCGTCTCCA TATAAACACTGATTCAGCTAGGGTTTTGCATCATCTCTCGTCGCGGCACACACACACACCAGCATCGGCGGCGATGGTGA GCAACACTGCATTCGAATCCAGATCCACTTCTTTGCAATTTCTTCATCCTTATTTGATTCTTCACAAAACAGCCACTAGA TTTCAACTTCCATGGCGATTTCCCTTTGCAGCATAATCACTTCTAATCGTCGTTTTTCTTTGTAGGCTCCCAAAAAAGGT GGAAAAGCTACAGTTGCTGCCTCCAAGAAGAAAACCGTATGTATTTTCCTGAAAATGAATCTTATTCATGATCCATTTTT GGTTTCATTTGTACTGTTGTTTATTTCTGATATCGTGTTTTGAAATCGCAGGAGAAGGTTACGAACCCGTTGTTCGAGAA GCGTCCCAAGCAGTTTGGAATCGGAGGAGCGTTGCCTCCCAAGAGGGACCTAACAAGGTTTGTGAAATGGCCTAAGGTCG TTCAGATTCAAAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACAAAGACCCTT GACAAGAACCTCGGTAAGATAATCTTCACTAAATCGTTGAATCTGTTTTTAATTTTTGTTGTGTTGCTCTCTGTGATGTG TAGTCTTTGTTGTTAAGCACATTTGATTGCTTTGATTTCATTTTGTTAAGAGCATGTTCATTGTGGTAATTGGTAGCAAA ATGGGTTGAATCTCTTGAACGTAGGGTTTGATAATTGAATCTAGCGGGTCTCGTTATTTAGGTTGATAGGATTGTTTGCC CACTTTTTTGTGATTTTATTTATTGGTTTTTAAGCGTTTTGAAAATTTGGAGAATTTTAGGGTTCTTTTGTCGAGTGGTA ATTCAGGCAGCCGACTTGCCATGATTCAATGGCTTGAAAGGTGTTTAGCTGCTCGTAAATTAAATGCTCTTGCTCTTCAG ATTTGCTGAGTTTTTCTATGAAGCCGGTCTAGTAAGCTTTAGTACATTTTTTTTCCTAAACTATTTTGGCTATGCAAAGA TTGAAAAACTTTATGAATGCGCTTGAAAGTAGTGTTTGATCAAGAACCTAGTGGTTCTCTTTTTTTAGGTTGATAAAATT GCCCCCTCCCTCCTTTTGTGATTTGATGCATTGTGTTTGAGTGTTCGAAACTTTGTAAAATTTTTAGGGTTCTTGTGTCG AGTGGTAATTCAGGCAGCCTACTTGCCATGATTTAATGACATGAAAGGTGTTTAACTGCTCGTAAATTAAATGCTCTTGC TCTTCAGATTTGCTGAGATTATCTCTGAAGCTGGTCTAGTAAGCTTTAGCACATTTTTTCCTAAACTATTTTTTCTTTGC CAAGATTGAAAAACTTCAACCATGCCCTTGAAAGTAGTGTTTGATAAAGAACCTAGCGGATCTCTTTTTTTAAGTTGATA AAATTGTTTTCCCCCTTCTTTGTTGATTTGATGTATTGTGTTTGAGTGTTTGAAAATTTGGAGAATTTTTAGGGTTCTTG TATTGAGTGGTAATTCAGGCAGCCTACTTGCCATGATTCAATGACATGAAAGGTGTTTAACTGCTCGTAAATTAAATGCT CTTGCTCTTCAGATTTGCTGAGTTTTTCTCTGAAGCTGGTCTAGTAAGCTCTAGCACAATTTTTTTCCTAAACTATTTTG TCTATGCAAAGAATGAAAAACTTTATCAATGCCCTTGAAAGTAGTGTTTGATCTAGAACCTAGATTGTTTTCCCCCTTTT TTGTGATTTGATGTATTGTTTTGGAGTGTTTGAAAATTTGGAGAATTTTTAGTGTTCTTGTGTCGAGTGGTAATTCAGGC AGCCTACATGCCATGATTCAATGGCATGAAAGGTGTTTAACTGCTCGTAAATCAAATGCTCTCGCTCTTCAGATTTGCTG AGATTTTCTCTGAAGCTGGTCTAGTAAGCTTTAGCACATTTTTTTCCTAAACTATTTTGTCTTTGCCAAGATTGAAAAAC TTCAACCATGCCCTTGAAAGTAGTGTTTGATAAAGAACCTAGCGGATCTCTTTTTTTAAGTTGATAAAATTGTTTTCCCC CTTCTTTGTTGATTTGATGTATTGTGTTTGAGTGTTTGAAAATTTGGAGAATTTTTAGGGTTCTTGTATTGAGTGGTAAT TCAGGCAGCCTACTTGCCATGATTCAATGGCATGAAAGGTGTTTAACTGCTCGTAAATCAAATGCTCTTGCTCTTCAGAT TTGCTGAGTTTTTCTCTGAAGCTGGTCTAGTAAGCTCTAGTACATTTTTTTTATAAACTATTTTGATTATGCAAATATTT TACAAATACCTTTTACCATAGTAATTGTTTTGATGCTCAGTTGTTTTTTAATCTGAGAAGCTTTAATTTGAAATTCACAT GTTGTGAGTTGTGAAGAATAAAATTCTTATGGATTTTAAAAATAAAATCAAGTCTAATTTGCTACATAGAGGCTGGTAGT TATTCTGATTACTCTGTAGCTGTGTTTTCTTTAGGTTTTTATGTGCATTGTGTTGAACTGCTTCTTTTTATGTTCAACTT CTAATGTTCTGTATATGTGGATATTGTGTGTATTGTTGTTTTGATTGTCTCTTAATTTCACCTGCAGCTACAAGCCTGTT CAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCCGAGGCTG AAAACAAAACAGTTAAGACTGAGAAGCCAATCAATGTGAAGTATGGGCTCAATCATGTTACCTACCTTATTGAGCAGGTT GTTGTCTATTTCATCTTTGTTTGTTTGCACTTTTCCCAATTCTTTGGTAACGTTGATGAATGACTTGTTAATCTATTTTT TCCTTGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGACGTTGACCCTATTGAATTGGTTGTCTGGCTTCCAGCCTT GTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAAGGCACGCTTGGGATCGGTAATTTTTATCTGATCCCTAC ACTGTTTTTTGTCTGAGAAATTTCTTTGTTGACCTGATCAAACTGGCTGATTTAATCTAATTTATTTTAACAGATTGTCC ACAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAACGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAAGCT ATCAAGGTACTGTGGAATTGAACTTTCCTTTTATCTGCTTTTAATACTAGTAAAAAACTGAACTCATTGTTTGTGGCTGC ATTTTCAGGCTAACTTCAACGACAAATATGAAGAGTACAGGAAGAAGTGGGGCGGTGGGATCATGGGTTCCAAATCCCAA GCTAAAACCAAGGCGAAGGAACGCGTTCTTGCCAAGGAGGCTGCTCAAAGGATGAATTAGGCGTTCAACAATTTTTTGTT GCCTTGTCCTTGGTTTTGTTTAATGTCATCTATTAACTTAAATCTAAGGTTACTTTTACAAGACAGGTTGCTGTATTCTC ACAACAGAAACATTCATTTACATGAGTTAGTGTATGTCGTTCTAAACTAGATTGCTGCTGGCAGTAAATTTTGGTGTGAT TTTCCTACAATCAATTTGTCGTAGTCATTACTGTTCGTTCATTAATGTTACTCCATTGGTATGTATGTTGCGGGCTTGAG TTATTTAATTATTTAAGTTGATGTTACGAAGCTGTAGAAGAGCTAGTGATCAAGTGTGTTGTAGCCTTGTAGATGTGAAA TTATAGGGTTTTGATTTTAATCTTAATTTTATTTTCAATTTTTTTTAACAAGGTATGAGGTATCTAACAAGTGGCTATGA GACCAATTCCTAATCCTTTAGCCGTGCAATAAGCCGTTTGACCAAATAATCTTTTAATCACCCG
CDS sequence (LotjaGi3g1v0525800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCCAAAAAAGGTGGAAAAGCTACAGTTGCTGCCTCCAAGAAGAAAACCGAGAAGGTTACGAACCCGTTGTTCGA GAAGCGTCCCAAGCAGTTTGGAATCGGAGGAGCGTTGCCTCCCAAGAGGGACCTAACAAGGTTTGTGAAATGGCCTAAGG TCGTTCAGATTCAAAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACAAAGACC CTTGACAAGAACCTCGCTACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAAGAAAGAGCG TCTTTTGAAAAGGGCTCAGGCCGAGGCTGAAAACAAAACAGTTAAGACTGAGAAGCCAATCAATGTGAAGTATGGGCTCA ATCATGTTACCTACCTTATTGAGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGACGTTGACCCTATTGAATTGGTT GTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAAGGCACGCTTGGGATCGATTGT CCACAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAACGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAAG CTATCAAGGCTAACTTCAACGACAAATATGAAGAGTACAGGAAGAAGTGGGGCGGTGGGATCATGGGTTCCAAATCCCAA GCTAAAACCAAGGCGAAGGAACGCGTTCTTGCCAAGGAGGCTGCTCAAAGGATGAATTAG
Protein sequence (LotjaGi3g1v0525800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKKGGKATVAASKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKVVQIQRKKRILKQRLKVPPALNQFTKT LDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAENKTVKTEKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV VWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQ AKTKAKERVLAKEAAQRMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 25 | 25 | - | – | |
PANTHER | 11 | 258 | 248 | 3.1E-153 | – | |
PANTHER | 11 | 258 | 248 | 3.1E-153 | – | |
PRINTS | 30 | 47 | 18 | 8.1E-68 | ||
PRINTS | 47 | 64 | 18 | 8.1E-68 | ||
Gene3D | 51 | 234 | 184 | 1.3E-86 | ||
PRINTS | 67 | 86 | 20 | 8.1E-68 | ||
SUPERFAMILY | 89 | 230 | 142 | 1.14E-33 | ||
PRINTS | 91 | 104 | 14 | 8.1E-68 | ||
Coils | 99 | 122 | 24 | - | – | |
Pfam | 116 | 206 | 91 | 1.8E-25 | ||
PRINTS | 125 | 145 | 21 | 8.1E-68 | ||
PRINTS | 129 | 143 | 15 | 2.7E-23 | ||
PRINTS | 148 | 161 | 14 | 2.7E-23 | ||
PRINTS | 164 | 174 | 11 | 2.7E-23 | ||
ProSitePatterns | 167 | 184 | 18 | - | ||
PRINTS | 174 | 188 | 15 | 2.7E-23 | ||
PRINTS | 186 | 210 | 25 | 8.1E-68 | ||
PRINTS | 218 | 238 | 21 | 8.1E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. | ||
Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi3g1v0525800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…