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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0529900 |
| Transcript ID | LotjaGi3g1v0529900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0529900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94688483..94691112) extracted from Lotus japonicus Gifu genome v1.2.
TACTGATTGGTTTATAAAGCCCGTGACCTGAACCCGCATTTCGGCCCATTCCTGAACCGACATTCAATTATGAACCCACT GGCGCAGCGCGTTGTTTCAACTTTCCAAGGCTATTCAATATTCATCATCGTATACCATATCACTATCCAGCTTCACCGTC TCACCTAAACGCACCGTCGCCATCACCGTCGTCGCTAATAATCCAGGTTCGTCGTTTCTTCCCTCCACTCCCTCCACGTT TAGGGTTTCTATTCTCCATCATCAAACCACTTCAATCTTCTATTCGCAATTAGGGTTCCACCTAAACTCTTCAATTCCCA ATCCCGAATTAGGTCTCCGCTGATTTCACAACGTGTTTTTGCTTTTGCAGAATCATGGCAGCTTTGAAAGAGCTTCTCCC TCAACCCAAATCATCTTCCACCACTTACTACGACCACAGCAACGATCCATGGTTCAAGCAGAGGTTCACCTCATCGGAGG AGGAAAAGGCCTCCGCTGCGATCAAGCAGAAGCCGGTGCCGCCATACCTCAAGCGCGCCGGCTTCGTTCCTCGCAGAGTC GAGGATTTCGGGGACGGCGGAGCCTTCCCCGAAATCCACGTCGCACAGTATCCTCTCGACATGGGAAGGGATAAATCCTC GAAAACCGGTTCCAAGATTCTGCCAGTAACTGTTGATGCGCATGGGAATGTTGCTTATGATGCCATAGTGAAGCAGAATG AGAATGCTAAGAAAATTGTGTACACGCAGCAGAAGGATTTGATACCGAAGATTTTGAAGAATGAAGAAGATGATGGGATG GATGAGGATGAGGATGTGCAGAAAGAGATTGAGGAAACCATGCAGGAAACTAAAGCTGCTCTTGAGAAGATAGTTAATGT CAGACTCAGTGCGGCGCAGCCGAAGAATGTTGCCAAGCAATCATCGGATTCGAAGTATATTAAGTACAAGCCTTCGCAGC AGAGTGCGGCATTCAATTCCGGGGCGAAGGAGAGGGTGATTAGGATGGTTGAGATGCCGGTGGATCCACTTGAGCCTCCG AAGTTCAAGCATAAGCGTGTTCCTAAGGCTTCTGGTTCGCCTCCGGTGCCGGTTATGCATTCGCCGCCTAGGCCTGTTAC TGTGAAGGATCAACAAGATTGGAAGATACCTCCTTGTATTTCGAATTGGAAGAATCCAAAGGGTTACACGATCCCGCTTG ACAAGCGTCTTGCAGCGGATGGGAGAGGCCTTCAGGAGGTTCAGATCAATGATAATTTTGCTAAGCTTTCGGAGTCGTTG TATGTTGCGGAGCAGAAGGCTAGAGAAGCTGTTGCTATGAGGTCTAAGGTTCAGAAGGAGATGCTTTTGAAGGAGAAGGA AAGGAAGGAGCAGGAGCTGAGGGCTTTGGCGCAGAAAGCTCGTTCTGAGAGAACTGGCGTGGCCCCTCCAGCTGCTGTTT CTGCTGTTTCTATGAGTATGGAGAAGAGCAGTGTGGAAGATGCTGATATGAGAGGTGATTATGAGCATCCAAGGGAAAGG GAGAAGAATTTTCCAAAGGAGTCGAGGGAAGAGAGGGAGGATCGGCTGCAGCGTGAAAAGATTCGTGAGGAGCGGCGCAA GGAGAGGGAGAGGGAGAGAAGATTGGAGGCTAAGGATGCTGCAATGGGAAAGAAGAGTAAGATCACAAGAGATAGGGATC GTGATATAAGTGAGAAAGTTGCTCTTGGTATGGCTACTGCTAAGACAGGGACAGAGGTCATGTATGATGAGAGGCTATTC AACCAGGATCAAGGGATGTCATCTGGGTTTGCCACTGATGATCAATATAATGTGTACGATAAAGGCTTGTTTACTGCACA GCCAACGCTTTCAACCCTGTATAGGCCAAAGAAGGATGTTGACAATGAGACTTATGGAGGTGCTGATGAGCAACTAGAGA AGATTATGAAGACTGATCGCTTTAAGCCAGACAAAGCATTTTCTGGGGCTTCTGAAAGGGCAGGTCCAAGGGATAGGCCG GTTGAGTTTGAGAATGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGACGGAGGTGAAGAAGGGTAAGAAGGCCAT GGAGAAAGTGGGCGGTGGAGGAACTATGAAAGCAAGTGCCGGATCTTCAATGCGGGACGGTTATGAGGGAGGTTCGAGTA GGACTCGCATTGGATTTGAAAGGGGACATTAAGGAGCTCAGGATTAAATTATGCCTATTTCTCATGCTTAGTGTTGAGTA TTACTATTCACAGTGGTGGCATAAGTTGGTATGCGCCTTGAAATGAATAGTGGGGATGATCTGGTCGAATTAGCACCCCC ACCCTCTGGGTATCATATTTTGGGTGGTGGAATAAGCTGGTTTTGTATTCTGTTGTGTTGATGACAATTTGTCTTTCAGT AAGTTATATTGAATGAATTTTAATGTTTCAAGTAGATATTGTCTATTAGAAAGTAGAAACTCTGGTATAGATGGTTGTTT AGATGTAAGGAACAGCATTGCAGGATACTCTTCATGCTGATATCTAAATCTGTTACTTTAGAATCTCTATGTTGTATTTA CACCTCATGTCAATTTTGTGTTTTGTTCTACATTCCTTCTTCTACGCAGCTGAAAATGTCATCCAAAGTA
CDS sequence (LotjaGi3g1v0529900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTTGAAAGAGCTTCTCCCTCAACCCAAATCATCTTCCACCACTTACTACGACCACAGCAACGATCCATGGTT CAAGCAGAGGTTCACCTCATCGGAGGAGGAAAAGGCCTCCGCTGCGATCAAGCAGAAGCCGGTGCCGCCATACCTCAAGC GCGCCGGCTTCGTTCCTCGCAGAGTCGAGGATTTCGGGGACGGCGGAGCCTTCCCCGAAATCCACGTCGCACAGTATCCT CTCGACATGGGAAGGGATAAATCCTCGAAAACCGGTTCCAAGATTCTGCCAGTAACTGTTGATGCGCATGGGAATGTTGC TTATGATGCCATAGTGAAGCAGAATGAGAATGCTAAGAAAATTGTGTACACGCAGCAGAAGGATTTGATACCGAAGATTT TGAAGAATGAAGAAGATGATGGGATGGATGAGGATGAGGATGTGCAGAAAGAGATTGAGGAAACCATGCAGGAAACTAAA GCTGCTCTTGAGAAGATAGTTAATGTCAGACTCAGTGCGGCGCAGCCGAAGAATGTTGCCAAGCAATCATCGGATTCGAA GTATATTAAGTACAAGCCTTCGCAGCAGAGTGCGGCATTCAATTCCGGGGCGAAGGAGAGGGTGATTAGGATGGTTGAGA TGCCGGTGGATCCACTTGAGCCTCCGAAGTTCAAGCATAAGCGTGTTCCTAAGGCTTCTGGTTCGCCTCCGGTGCCGGTT ATGCATTCGCCGCCTAGGCCTGTTACTGTGAAGGATCAACAAGATTGGAAGATACCTCCTTGTATTTCGAATTGGAAGAA TCCAAAGGGTTACACGATCCCGCTTGACAAGCGTCTTGCAGCGGATGGGAGAGGCCTTCAGGAGGTTCAGATCAATGATA ATTTTGCTAAGCTTTCGGAGTCGTTGTATGTTGCGGAGCAGAAGGCTAGAGAAGCTGTTGCTATGAGGTCTAAGGTTCAG AAGGAGATGCTTTTGAAGGAGAAGGAAAGGAAGGAGCAGGAGCTGAGGGCTTTGGCGCAGAAAGCTCGTTCTGAGAGAAC TGGCGTGGCCCCTCCAGCTGCTGTTTCTGCTGTTTCTATGAGTATGGAGAAGAGCAGTGTGGAAGATGCTGATATGAGAG GTGATTATGAGCATCCAAGGGAAAGGGAGAAGAATTTTCCAAAGGAGTCGAGGGAAGAGAGGGAGGATCGGCTGCAGCGT GAAAAGATTCGTGAGGAGCGGCGCAAGGAGAGGGAGAGGGAGAGAAGATTGGAGGCTAAGGATGCTGCAATGGGAAAGAA GAGTAAGATCACAAGAGATAGGGATCGTGATATAAGTGAGAAAGTTGCTCTTGGTATGGCTACTGCTAAGACAGGGACAG AGGTCATGTATGATGAGAGGCTATTCAACCAGGATCAAGGGATGTCATCTGGGTTTGCCACTGATGATCAATATAATGTG TACGATAAAGGCTTGTTTACTGCACAGCCAACGCTTTCAACCCTGTATAGGCCAAAGAAGGATGTTGACAATGAGACTTA TGGAGGTGCTGATGAGCAACTAGAGAAGATTATGAAGACTGATCGCTTTAAGCCAGACAAAGCATTTTCTGGGGCTTCTG AAAGGGCAGGTCCAAGGGATAGGCCGGTTGAGTTTGAGAATGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGACG GAGGTGAAGAAGGGTAAGAAGGCCATGGAGAAAGTGGGCGGTGGAGGAACTATGAAAGCAAGTGCCGGATCTTCAATGCG GGACGGTTATGAGGGAGGTTCGAGTAGGACTCGCATTGGATTTGAAAGGGGACATTAA
Protein sequence (LotjaGi3g1v0529900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEEKASAAIKQKPVPPYLKRAGFVPRRVEDFGDGGAFPEIHVAQYP LDMGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNEEDDGMDEDEDVQKEIEETMQETK AALEKIVNVRLSAAQPKNVAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKASGSPPVPV MHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKVQ KEMLLKEKERKEQELRALAQKARSERTGVAPPAAVSAVSMSMEKSSVEDADMRGDYEHPREREKNFPKESREEREDRLQR EKIREERRKERERERRLEAKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDQGMSSGFATDDQYNV YDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERAGPRDRPVEFENEEADPFGLDQFLT EVKKGKKAMEKVGGGGTMKASAGSSMRDGYEGGSSRTRIGFERGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 3 | 589 | 587 | 2.9E-269 | ||
| Coils | 142 | 162 | 21 | - | – | |
| Pfam | 187 | 346 | 160 | 1.2E-73 | ||
| MobiDBLite | 219 | 252 | 34 | - | – | |
| Coils | 314 | 345 | 32 | - | – | |
| MobiDBLite | 325 | 434 | 110 | - | – | |
| MobiDBLite | 325 | 341 | 17 | - | – | |
| MobiDBLite | 366 | 434 | 69 | - | – | |
| Coils | 388 | 420 | 33 | - | – | |
| MobiDBLite | 500 | 554 | 55 | - | – | |
| MobiDBLite | 500 | 548 | 49 | - | – | |
| MobiDBLite | 569 | 605 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi3g1v0529900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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