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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0530800 |
| Transcript ID | LotjaGi3g1v0530800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900; TrEMBL-Plants: tr|A0A151RAS9|A0A151RAS9_CAJCA Putative pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0530800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94750523..94754620) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTAGCATCCAAAACCCGATCTCAGGTCCGGTGTTGCGACGGCGGCGAATGAAGCTCCCACGCGGCGGCGCTCCGC TCGCACTCTCAGCCTCAGCTGCAACCCATTTCCGTCGCAGAAGCTTCTGCGCCTCCAAATTCGACGATGCTCGCTTTGTC TCCCTCATTTCCGACATTGTTCGAGGGAAGCAGAGTTGGAAGGTGGCATTCAAAGACCCTTCAATTTCATCCACATTGAG ACCCCATCACGTTGAACGAGTCTTGATCAACACCTTGGACGATTCCAGGTTAGCTTTCAGCTTCTTCAACTTCCTGGGTT TGCACCAAAAGCTGAAACATTCCACCACCTCCTTCGCTATCTTGGTCCATGCCCTCGTCCCTGATAGGCAATTCTGGGCT GCCAATTCTCTCTTGGACACCCTTCTCGAAAATGGGTCTGACGCAAAATCCAATTTTACCGAGTTTCTAGAAGCTCACAG GAACTGTAAGTTTTCGTCTACCTCGGGTTTCGATTTCCTAGTTCTGAGATATTTGCATCACACAAGGGTTTTAGATGCTG TGGTTGTTCTAAAACTCATGCTTGCTAACAGATTGTTGCCTGAAACTAGAACATTGAGTGCCCTCTTGAACGGGCTATTG AAAATTAGAAGTTATATATCGGTTTGGGAACTGTTTGATGAATCTGTGAATGCTGGTGTTCAACATGATCCTTATACTTG CTCAGCTGTAATCCGGAGCCTGTGTGAACTGAAGGATTTTTTTAGAGCTAAGCAGAAGATTAAGTGGATGGAATCTAATA GGTTTGATCTGAATATTGTAACTTACAATGTACTTATTGATGGGCTATGCAAGGGTGGTCGAGTTTCGGAAGCTTTTGAG GTTAAAAGATCATTGAGGGAAAAGGGTCTGGAACCAGATGTGGTTACATACTGTACACTAGTTCATGGTTTATGTAGGGT GCAACAATTTGGCGCTGGAATACAGCTTATGGATGAAATGGTTGAATTGGGATTTGCGCCAACCGAGGAGGCTATATCGA GGTTAGTGGAAGGGTTAAGAAAGCAGAGAAAGATTGATGTGGCTTATGGTTTAGTGGTTAAGCTAGGAAGATTTGGTTTT CTGCCAAATTTGTTTGTCTATAATAAATTACTGGACTCTTTGTGCAAAGGTGGAGATTTGGATAAGGCAGAGTTCCTTTA CAACAATATGAGGTTGACGAAGTTGCGGCCCAATGGTGTTACTTATTGTATTCTCATTGATTCCTTTTGCTTCAGGGGGA GGTTGGATGTTGCAATATCTTATTTTGATAGGATGATTGGAGATGGTATCAGAGACATGGTATATCCCTACAACTCTTTG ATAAATGGCCAATGCAAGTTTGGAGATATGAGTGCTGCCGAGTCCCTACTTACTGAGATGATTAATAAGGGGTTAGAGCC AACTGCTGCTACCTTTACACCACTAATTAGTGGCTACTGCAAAGGCCTAAAGCTACAAAAGGCATTTGAACTATATAATA AGATGCTTGAGAAAGGAATTACTCCGAATGTTTATACTTTCACTGCACTTATTTCTGGGCTTTGCCGCATGAATAAGATG GCTGAAGCATCCAAACTTTTCGATGAATTGGCAGAAAGGAAAATCAAGCCGACTGAGGTGACATATAATGTTATGATTGA AGGTTATTGCAGGGATCGCCAAGTCAGCAAAGCCTTTGAATTGCTTGAAGATATGCTCCAGAAGGGCCTTCTTCCAGACA CGTATACCTATAGAGCTCTTATCAGTGGCCTTTGTTCTACAGGTAGGGTTTCTGAAGCTAAAGATTTTATTGATGGTCTC CACAAGAAGAACCTCAAGTTAAATGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCCAGGAAGGAAGATTGATCGA GGCAATGAGTGCTTCTTGTGAAATGATTCAGAGAGGAGTCAACATGGATCTGGTTTGCCATGCCATTCTTATTGATGGTG CTCTAAAGCAGCCAGACAAGAAAATGTTATTTGGTCTCTTTAAAGAGATGCATGATCAAGGACTGAGACCTGATAATGTA GTATATACCAGTATGATTGATGCATACAGCAAAGAAGGATTGTTTAAGAAAGCTTTTGGATGTTGGGATTTAATGGTTAC TGACGAATGCTCTCCTAATGTTGTGACCTATACTGCATTGATGAATGGTTTATGCAAAGCAGGTGAAATAGACAGAGCAG GACTTCTTTTCAAGAAAATGCTGACTGCAAATGTCCCTCCTAATTCAATTGCATATGGCTGTTTTCTTGATTCTCTTGCG AAGGACGGAAACATGAAGGAAGCTTTAGAGCTTCATAATGCAATGCTTAAGGGGCTTTTAGCAAACACTGCTACATACAA CATTCTTATCCGTGGCTTCTGCAAATTGGGTAGATTTCTTGAAGCCACAAAAGTTCTCTCTGAAATGACTGAGAATGGTA TTTTCCCTGACTGTATTACCTATTCAACTTTAATTTACGAGTATTGCAGAATTGGCAATGTGGAAGCAGCAGTTAAATTG TGGCATACCATGCTGAATAAAGGTCTTGAGCCGGATTCGGTTGCATATAACTTGATAATATATGGTTGTTGTGTAAATGG AGAGCTCGATAAGGCATTTGAATTGCGTGATGACATGTTGAGGAGAGGGATGAAGCCAAGACAAAATTTACACGCGGTGC AGAAAGGGCAATAGAGGAGCAGCAGTTAAATTGTGGTATAACATGCTCTGAACAAAGGTCTAGAACCTGATTTGGTTGAA TTGGACTTTCTAATATATGGCGGTTGTGTTAATGGAGAGCACAATAAGGCATTTGAGTTGTTTGATGACATGTTGAGAAG AGGGGTAAAGCCAAGGGAAAATAAATAGAGGCTGATGCTTAATGTTGAAGGTGGTAGTGTCATCCAAACTCGAAGCACCT GGTAAAAGGTTAGTTTTGCGAAGTGGAAAAAATATTCTATTAGTTTTAATAACAGCTTTAATTCTTCTAGAGTAGGATAT TCACTTTACAAAGAAAATACAAATTGAGTTATAATCGTTGATTGAAAAATAATGTGTTGACATTGTGATAAATGTGCACA CGTATAGCTAAATTTGAAGTTGTTTAAATCCATTTCTTTGATTTTCTTATCAACAGTTATATACTTATATTATAACTCCT CACTTTTCCTTTAAATTGAATCTCTCTTTAGAGAAGTCATGTCCTAAATTAGTTTCTTCATCTCATACATTAACTATGTA CAATTTTTTTCTGTAGAGGAAAAGGAGAACATTACCGAGGTAGCATTACCAAAAGGAGAACTGGAGAAGGAACCTGTCAA ACTGAAATGGAAGGAAAAAATTGATATTACAGATAGGTAACTAAAGTTTAAGCAATGACACTTCACAACATGAGTTACAT GAAACTGTAAATTTCGATTGGAGCTAGTAGCAAGGTAAGGAAATTCTTATGTTTAGTTACTACAATTTTCAATTGGCAGA TGAACCCAGATGATGATGATGAGCCTATCACTGACAGGACCATTTTTGTTGGGGCTGGTAGAGAAACCATGGGGTTACCT TTGTAAATAATCTTTAGATGACGGTAATGATGATGATGATGAAAACTTTTTCTTTGGACTCCTCCCTGACAAAAACTAGA ATCATGAATTCATTTAATGTGAAGCATTCTTGTGACTCTGGGTTCGGTGTCCAAAATTTATATATTCATGGCTGGTTTTG CAAGTTATGTGAAATTTTGTTCGGCCATCAATAATACATATTGGATATGCCATAAAATATGATGAAATCATTGTCATAGT TGATATTCAAGTATATGGTTATGGTTTGTAGTCATCCTCGAAGTGTTCTCTTGTGCCATTGACAACTTCCATACTTGGTG TGCATATCAGTTGTCTCTGTAAAGCCTAAAAAGATCTCTCTTTATTTGTATTTTTTTGAAATATTATTTATATGCATGTG AAGATATTGGTCTTCGATCATGTTAGAGAAGGGAGGCTAAAAGAACATTGGAATATATTGTTAGAAATTACATCATTATC GATAATATTCCTCAAAAT
CDS sequence (LotjaGi3g1v0530800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCCACGCGGCGGCGCTCCGCTCGCACTCTCAGCCTCAGCTGCAACCCATTTCCGTCGCAGAAGCTTCTGCGC CTCCAAATTCGACGATGCTCGCTTTGTCTCCCTCATTTCCGACATTGTTCGAGGGAAGCAGAGTTGGAAGGTGGCATTCA AAGACCCTTCAATTTCATCCACATTGAGACCCCATCACGTTGAACGAGTCTTGATCAACACCTTGGACGATTCCAGGTTA GCTTTCAGCTTCTTCAACTTCCTGGGTTTGCACCAAAAGCTGAAACATTCCACCACCTCCTTCGCTATCTTGGTCCATGC CCTCGTCCCTGATAGGCAATTCTGGGCTGCCAATTCTCTCTTGGACACCCTTCTCGAAAATGGGTCTGACGCAAAATCCA ATTTTACCGAGTTTCTAGAAGCTCACAGGAACTGTAAGTTTTCGTCTACCTCGGGTTTCGATTTCCTAGTTCTGAGATAT TTGCATCACACAAGGGTTTTAGATGCTGTGGTTGTTCTAAAACTCATGCTTGCTAACAGATTGTTGCCTGAAACTAGAAC ATTGAGTGCCCTCTTGAACGGGCTATTGAAAATTAGAAGTTATATATCGGTTTGGGAACTGTTTGATGAATCTGTGAATG CTGGTGTTCAACATGATCCTTATACTTGCTCAGCTGTAATCCGGAGCCTGTGTGAACTGAAGGATTTTTTTAGAGCTAAG CAGAAGATTAAGTGGATGGAATCTAATAGGTTTGATCTGAATATTGTAACTTACAATGTACTTATTGATGGGCTATGCAA GGGTGGTCGAGTTTCGGAAGCTTTTGAGGTTAAAAGATCATTGAGGGAAAAGGGTCTGGAACCAGATGTGGTTACATACT GTACACTAGTTCATGGTTTATGTAGGGTGCAACAATTTGGCGCTGGAATACAGCTTATGGATGAAATGGTTGAATTGGGA TTTGCGCCAACCGAGGAGGCTATATCGAGGTTAGTGGAAGGGTTAAGAAAGCAGAGAAAGATTGATGTGGCTTATGGTTT AGTGGTTAAGCTAGGAAGATTTGGTTTTCTGCCAAATTTGTTTGTCTATAATAAATTACTGGACTCTTTGTGCAAAGGTG GAGATTTGGATAAGGCAGAGTTCCTTTACAACAATATGAGGTTGACGAAGTTGCGGCCCAATGGTGTTACTTATTGTATT CTCATTGATTCCTTTTGCTTCAGGGGGAGGTTGGATGTTGCAATATCTTATTTTGATAGGATGATTGGAGATGGTATCAG AGACATGGTATATCCCTACAACTCTTTGATAAATGGCCAATGCAAGTTTGGAGATATGAGTGCTGCCGAGTCCCTACTTA CTGAGATGATTAATAAGGGGTTAGAGCCAACTGCTGCTACCTTTACACCACTAATTAGTGGCTACTGCAAAGGCCTAAAG CTACAAAAGGCATTTGAACTATATAATAAGATGCTTGAGAAAGGAATTACTCCGAATGTTTATACTTTCACTGCACTTAT TTCTGGGCTTTGCCGCATGAATAAGATGGCTGAAGCATCCAAACTTTTCGATGAATTGGCAGAAAGGAAAATCAAGCCGA CTGAGGTGACATATAATGTTATGATTGAAGGTTATTGCAGGGATCGCCAAGTCAGCAAAGCCTTTGAATTGCTTGAAGAT ATGCTCCAGAAGGGCCTTCTTCCAGACACGTATACCTATAGAGCTCTTATCAGTGGCCTTTGTTCTACAGGTAGGGTTTC TGAAGCTAAAGATTTTATTGATGGTCTCCACAAGAAGAACCTCAAGTTAAATGAGATGTGCTATAGTGCACTTCTACATG GTTATTGCCAGGAAGGAAGATTGATCGAGGCAATGAGTGCTTCTTGTGAAATGATTCAGAGAGGAGTCAACATGGATCTG GTTTGCCATGCCATTCTTATTGATGGTGCTCTAAAGCAGCCAGACAAGAAAATGTTATTTGGTCTCTTTAAAGAGATGCA TGATCAAGGACTGAGACCTGATAATGTAGTATATACCAGTATGATTGATGCATACAGCAAAGAAGGATTGTTTAAGAAAG CTTTTGGATGTTGGGATTTAATGGTTACTGACGAATGCTCTCCTAATGTTGTGACCTATACTGCATTGATGAATGGTTTA TGCAAAGCAGGTGAAATAGACAGAGCAGGACTTCTTTTCAAGAAAATGCTGACTGCAAATGTCCCTCCTAATTCAATTGC ATATGGCTGTTTTCTTGATTCTCTTGCGAAGGACGGAAACATGAAGGAAGCTTTAGAGCTTCATAATGCAATGCTTAAGG GGCTTTTAGCAAACACTGCTACATACAACATTCTTATCCGTGGCTTCTGCAAATTGGGTAGATTTCTTGAAGCCACAAAA GTTCTCTCTGAAATGACTGAGAATGGTATTTTCCCTGACTGTATTACCTATTCAACTTTAATTTACGAGTATTGCAGAAT TGGCAATGTGGAAGCAGCAGTTAAATTGTGGCATACCATGCTGAATAAAGGTCTTGAGCCGGATTCGGTTGCATATAACT TGATAATATATGGTTGTTGTGTAAATGGAGAGCTCGATAAGGCATTTGAATTGCGTGATGACATGTTGAGGAGAGGGATG AAGCCAAGACAAAATTTACACGCGGTGCAGAAAGGGCAATAG
Protein sequence (LotjaGi3g1v0530800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLPRGGAPLALSASAATHFRRRSFCASKFDDARFVSLISDIVRGKQSWKVAFKDPSISSTLRPHHVERVLINTLDDSRL AFSFFNFLGLHQKLKHSTTSFAILVHALVPDRQFWAANSLLDTLLENGSDAKSNFTEFLEAHRNCKFSSTSGFDFLVLRY LHHTRVLDAVVVLKLMLANRLLPETRTLSALLNGLLKIRSYISVWELFDESVNAGVQHDPYTCSAVIRSLCELKDFFRAK QKIKWMESNRFDLNIVTYNVLIDGLCKGGRVSEAFEVKRSLREKGLEPDVVTYCTLVHGLCRVQQFGAGIQLMDEMVELG FAPTEEAISRLVEGLRKQRKIDVAYGLVVKLGRFGFLPNLFVYNKLLDSLCKGGDLDKAEFLYNNMRLTKLRPNGVTYCI LIDSFCFRGRLDVAISYFDRMIGDGIRDMVYPYNSLINGQCKFGDMSAAESLLTEMINKGLEPTAATFTPLISGYCKGLK LQKAFELYNKMLEKGITPNVYTFTALISGLCRMNKMAEASKLFDELAERKIKPTEVTYNVMIEGYCRDRQVSKAFELLED MLQKGLLPDTYTYRALISGLCSTGRVSEAKDFIDGLHKKNLKLNEMCYSALLHGYCQEGRLIEAMSASCEMIQRGVNMDL VCHAILIDGALKQPDKKMLFGLFKEMHDQGLRPDNVVYTSMIDAYSKEGLFKKAFGCWDLMVTDECSPNVVTYTALMNGL CKAGEIDRAGLLFKKMLTANVPPNSIAYGCFLDSLAKDGNMKEALELHNAMLKGLLANTATYNILIRGFCKLGRFLEATK VLSEMTENGIFPDCITYSTLIYEYCRIGNVEAAVKLWHTMLNKGLEPDSVAYNLIIYGCCVNGELDKAFELRDDMLRRGM KPRQNLHAVQKGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 12 | 7 | - | – | |
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 893 | 877 | - | – | |
| Gene3D | 65 | 233 | 169 | 8.3E-10 | ||
| PANTHER | 94 | 349 | 256 | 3.9E-175 | – | |
| ProSiteProfiles | 97 | 131 | 35 | 6.171 | ||
| ProSiteProfiles | 149 | 183 | 35 | 5.81 | ||
| ProSiteProfiles | 184 | 218 | 35 | 7.07 | ||
| ProSiteProfiles | 219 | 253 | 35 | 7.991 | ||
| Gene3D | 234 | 350 | 117 | 6.9E-25 | ||
| ProSiteProfiles | 254 | 288 | 35 | 13.614 | ||
| Pfam | 254 | 302 | 49 | 7.9E-17 | ||
| TIGRFAM | 256 | 290 | 35 | 5.3E-10 | ||
| ProSiteProfiles | 289 | 323 | 35 | 11.849 | ||
| TIGRFAM | 291 | 324 | 34 | 3.5E-7 | ||
| ProSiteProfiles | 324 | 358 | 35 | 6.73 | ||
| PANTHER | 355 | 426 | 72 | 3.9E-175 | – | |
| Pfam | 358 | 406 | 49 | 3.9E-12 | ||
| ProSiteProfiles | 359 | 393 | 35 | 11.455 | ||
| TIGRFAM | 362 | 394 | 33 | 6.6E-7 | ||
| ProSiteProfiles | 394 | 428 | 35 | 10.304 | ||
| TIGRFAM | 396 | 426 | 31 | 2.8E-5 | ||
| Gene3D | 408 | 515 | 108 | 5.2E-31 | ||
| PANTHER | 425 | 554 | 130 | 3.9E-175 | – | |
| ProSiteProfiles | 429 | 463 | 35 | 11.367 | ||
| Pfam | 433 | 461 | 29 | 5.4E-6 | ||
| TIGRFAM | 433 | 464 | 32 | 9.7E-7 | ||
| ProSiteProfiles | 464 | 498 | 35 | 11.97 | ||
| TIGRFAM | 467 | 500 | 34 | 4.0E-8 | ||
| Pfam | 469 | 512 | 44 | 5.0E-15 | ||
| SUPERFAMILY | 480 | 807 | 328 | 2.43E-8 | – | |
| ProSiteProfiles | 499 | 533 | 35 | 12.386 | ||
| TIGRFAM | 501 | 535 | 35 | 2.3E-7 | ||
| Gene3D | 516 | 653 | 138 | 1.5E-35 | ||
| Pfam | 533 | 582 | 50 | 3.0E-19 | ||
| ProSiteProfiles | 534 | 568 | 35 | 13.614 | ||
| TIGRFAM | 536 | 570 | 35 | 1.8E-10 | ||
| PANTHER | 549 | 638 | 90 | 3.9E-175 | – | |
| ProSiteProfiles | 569 | 603 | 35 | 10.633 | ||
| TIGRFAM | 571 | 604 | 34 | 1.7E-5 | ||
| ProSiteProfiles | 604 | 638 | 35 | 10.589 | ||
| Pfam | 607 | 636 | 30 | 2.1E-4 | ||
| TIGRFAM | 607 | 639 | 33 | 2.2E-5 | ||
| PANTHER | 634 | 797 | 164 | 3.9E-175 | – | |
| ProSiteProfiles | 639 | 673 | 35 | 8.013 | ||
| Gene3D | 654 | 757 | 104 | 2.3E-28 | ||
| Pfam | 673 | 722 | 50 | 6.2E-15 | ||
| ProSiteProfiles | 674 | 708 | 35 | 10.994 | ||
| TIGRFAM | 676 | 710 | 35 | 5.9E-9 | ||
| ProSiteProfiles | 709 | 743 | 35 | 12.595 | ||
| TIGRFAM | 711 | 744 | 34 | 2.6E-8 | ||
| ProSiteProfiles | 744 | 774 | 31 | 8.561 | ||
| Pfam | 747 | 773 | 27 | 0.0057 | ||
| Gene3D | 759 | 892 | 134 | 2.8E-35 | ||
| PANTHER | 773 | 885 | 113 | 3.9E-175 | – | |
| Pfam | 778 | 826 | 49 | 3.2E-15 | ||
| ProSiteProfiles | 778 | 812 | 35 | 13.713 | ||
| TIGRFAM | 781 | 814 | 34 | 1.7E-10 | ||
| ProSiteProfiles | 813 | 847 | 35 | 12.66 | ||
| TIGRFAM | 815 | 849 | 35 | 1.3E-8 | ||
| Pfam | 843 | 875 | 33 | 6.6E-10 | ||
| ProSiteProfiles | 848 | 882 | 35 | 13.143 | ||
| TIGRFAM | 850 | 882 | 33 | 5.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0530800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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