Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0538800 |
| Transcript ID | LotjaGi3g1v0538800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A0R0EH27|A0A0R0EH27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0538800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95552612..95557398) extracted from Lotus japonicus Gifu genome v1.2.
GAAACAATAAAAAACTGCGCCTTTCAATAGATACAATGGGCTATAAACCCAAGCCCAAAGGAAGGGTACAAAAGGCTCGC AAGGAGCAGAGCAGGCACAAACGAAGGATACAGAGAACGAAACACAGCAAAGACTTAAACCAAAACCCTAAGTGCCTAAC AGATTAGGTCATTTGCATGATCGCTGCCGAAATCCCTACCCAATGAAGCTCCTCCGTGTTTCATTTACCGCCGCCGCCAA AACCTTTCGCTACGTGCTCCGAAACGGCGTGTCGCCGCCGAACGTAAACGCTTACAACGTCATGATCCGCGGCTTCGCCG CCGCCGCTGTGAACTTAGAATCAGAATCGGCGGTGGGGGATGCGTCGGGGTTATTGAAAGCAACGACTGAGAAGGGTGTG GAGCCGACTTTCAATGCGATTATTCAGGGGTTGTGCAGGGAAGGTAGCATAATAGAGGCAGAGAAGATGCTTGAGGAGAT GAATCGGAAGGGTTTGGCCCCTGATGAGAGGACTTACACGTCTCTCATTCATTTGTTCTGCGACAAGTGGCAGAACGTTA AGGCTCATGAGGTTTTGAATGAAATGATTCTTCGTGGGTTTTCGCCCTCGATTGCTACATACAACGACCTTCTTTATGTA TATTGCCGTGGGGGGGGAACGAGGGTTGAGGAGGCTGTGGGGATTTTGAGGGGCATGGCTGAGAGGGGTTTGTCCCCTGA TGTTGTTAGTTATACCACTATTATATCTGGGTTTTGCGTATTCGACCAGGAGGTTGAGAAGGCTCTTGAGATGAAGGTGG AGATGGTTGAGAAGGGTATCTTGCCTAATGCTGCCACGTTTTCAATGCTTATACGAGCCCTGTGCCGGGAGGGAAGACTG CCCGAAGCTTTTGATCTATTCCGAGAGATGCTGTGCGGCGGCTTTTCACCAGATAAGTGTACTTATTTGATGTTGATTAA TGCTTATTGTGCTGAAGGTGAATTCAGTAAGGTTTTTCATTTGAATGATGAAATGATACACAAGGGTATTTCGTCTAATT TTGTTACTGGGTTTTCACCGTCTCTTGTCACATACAACGCGCTTATTCATGGGTGTTGTGTTTTGCGGAGGGTTGAGGAT GCACTGGGGATTTTGAGGGGCATGGCTGAGTTGGGTTTGTCCCCTGACGCTGTTGGTTATAACACTGTTATATCCGGGTT TTGCAAAATCGGGGAGCCGGGGAAGGCGTATAAATTGATGCTGGAGATGGTTGGAAAGAACATCCAGTGGCTGGATGAAG ACACATATGAATCGCTTATGGAAGACCTGTCAGATGAGGATACTTATTCTAGTTTGATGAATGAGTATTTAGCTGAAGGT AACTTGGAAATGGCTTTTGAATTTGATCGTGAAGTCTCAAAAAATGGTTATTTGCCAAGTCATGTTACCTATAGTGCTCG TTTGAATGGGCTTATTAAGAAAGCTAGGACAACAGAAGCTAAGATGCATCTTTTGTGTATGATTTATAATCAGTGTTTGA CTATGCCAAGTTATATAACATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTCAAGAGTGTGGTAGGACTTGTC AAAGGTTTCATCAAGAGGGGTTTACTGAATGAAGCAGCCAGAGCTCATGACACAATGCTTCACGGGAATTATAAGCCAGA TGGAGCAGTTTATAATTTGTTAATATTTAGTCATTCTAGAAGCCTTAATGTTGATAAGGCATATAATATGTACAAGGAGA TGGTGCATTATGGTTTTGATCCTCATATGTTCTCTGTGCTTGCTCTTATTAAAGCTCTATATCATGTTAGAAGGTACGAT GAGACGCGTTGGGTAATTCAAAACACATTGAGGAGCTGTAATCTCAATGATTCTGAGCTACCTAAAGTACTTGATGAAAT TGATGTCAGGAAATTTCAAATTCATGCTCTTCTGTCTGTGCTAGCTGAAATAGCCGTGGATGGCCTGTTACTTGATGGTG GAAAGTGTTCATATGCTTCAGCGTCATCACACCGCTTCTCTCCCACCACCATTATTGTCTTCTTGATTTTTATCATAAAA GGTAAATCTACTTTTCGTTAATCGCTTGAAATGCTCCCATTTATTTTACTCTTTGGGAGGAGAGTTTCGTTTGCAATTGG CTGCCTGTAGTATTTGAAATAAAAAGATAATTTTTTTGTAAGGAATTGTCTGCAATCCGATTACAGTGACCCCCTTGTGG TCTGTGTGAAGTCAGTTGCAGGTATCTCTGTATATATGAGTTTGGTTGTGTTGGCGCTTTGCATTTTGTAGTTCCCCTAG TCTGTGTGAGCTGTGCGACTAAGTTTTTAAATCTCAGTGTCACCTATCGTGTTGCCCATGTTCATTAGAGTTACTTTTGA TTTTATTGTGTTGATGGATAATTTATCTTTTGGTGATTGTTTTGTTCATGAGTAAATTTATTCTTTACTAAGTTTTGATC TGTTTGCCGAGTGTTTGGTCTCTACTGTAACATTTGATCTCTATCCTTTCTTAATAGGTTTGGTGGAACTGAGTCTCGGA TGAAAACTTGCTATTATAGTAGCTGTGGGTTCAACTCTGTCAAAGGTGAGAGCTGAATATATCACGATGCCATAGATTAA GCTCTCTTTTCATAGTCCCTTTTTCCTGTGGGACAAGGTGAGTTGTTCGGTCATGCCTGAGTTATACTGATTGATTTAAT TTTTATCTCTTCAATGGCTAATGTTAGAGAAAGTAATGAATTCTACAGCAAAATATTTACTAATAAACATTAATGTCTGA ACTCGACTAGACCATCTTGGGAACTAATCCTTGATAATTTATTGGTCATGTCCTTCTAGTTTTGTTTTATATGCTTTTGT ATATTCTTAACATGATTTTCTCTTGAACCCAGTTCACAAGACTGCTTTGCACTGTGGAGCTGTACTTATGAAATTGACAA ACATTATTGAACTCATTTTGATTCTATGCTATATCTTGCTATAATGCTTTTTACTACCTCTCTACCGTTCTTCCCTAAGA AAGTAGAAACACCACGAAAACAAAACAAAGTGATTATAGTTCTTGGATCTTATGCATATCTTGGCCACTGGTTTGCTTAA ATTTGGTATGATGCTGGCATCAATATCTGAATAGGACAAATATAAGTTGGAGATGTTAATTGTGTGTTTTCTTTTTGTTC AACAAGTCCCACCGATACCCAGTCACTGTTTAAAAACATGGGGTCGTTGTTTCTATTGATTTGGCTGTTATAGTTCATAC GAATATATGCTATAAATCTGATTGGGACTCATTGTTTATGACTTGAGATTTCTTTTTAAAAAATCATCACTGAGCATTGT AAAATTTCTCATTCCTTTACTTTCATGTTTTTTTTTCAGATAAGAAGCTTTAGCTCGTATGAGGAACCTCTTGGGGTTTG AGAACATCACGATAATTACTATATATGTTATTTTGAGTGTCTTGAATGTAAGACTGGAACTTGTATTCTAGGATTTTCTG AATGTATGATGTTATACTTCAACGAAGTTATTATATTAAGTCCTTATAATTACTATAGATGTTATTTTGAGAAGTGTCTG GAATGTAAGACTGGAACTTGTATTGTAGGATTTTCTGAATGTATGATGTTAACTTCAAGTCTTCAACGAAGTTATTATAT TAAGTCCTTATTATTCTAGTTAAAATAAGTGAAGTTATGTGATTATTCTTTAGTGTAAAATTAGGGGTGTCACATTTCTT ATGTTTGGCCCACATGACACTTTTAAATTAGGGCAAAACTTATGTGCAGTACCTTATTTGCTGATTGCCAATTAGAATTG AACATGTGGATTATTATTTCCACTATCATTAATATCCTAATTTCCTAAACTAACGCCATCAATGTCCCTCTTTTGTTTCT GTTATCGTCAAACTGAGATCGTGGATTCGTGGGGAACTAGAGGACAGACCAGTACATTGCGTTGGAGGAGAATAAACTTA GCGAATAGTTCCTGGCCTAAACTGTCATCGCTGGAACTGGAAGAATACCATAATTAACATGTCATGAGATAAAGACCTGA GAAATCAAGGAACAGATGCAAACACGCACAAGAAGCTGCTGGGCTGTACTTGGAAGTGAAAATCACAGCCAAAATTAATC TGATGTAATAAAGAATAGAAAGTTATGATGAGAAATTCAAGCAAGAATCTTGAGCCCGAACGTGAATCACCCCACTGCAA GGTTTACATGGTGAATGGATGACCTTAAACGCATTCACTGTTTAATTAGGAAAATATAATTTGAAACAAGGATATTGCTG GTATAAACTTCAGCCATTGTTTCCCCTTTTTCTGCAGTAGGCACTTCAATAGCAATCAGGATATGCATCTTTGTTGAGCT TTGATGAGATAATCAGTGGCTTTTTTTTTTGGAGAGTTAAGAGGAGGCTGGGTATTGATATACGATTTAGATTTCATAAT CTGATTCAAAGAGATAAGGAACGTGATAGATTTTATGGGATTAATTTCATTCAATTGCCTTCTTCAACCTCCAATTTTAG TTTCGACAGGGATCCTTCAAAAATCTCTACCTGGGTTTGGTTCTCCCTCGTACAAAAGCAGACAAGGAGTGTTTTTCTGG TGGATGCAACTTGCAAAGCAGAGGATTGGGAATGAAAGGAGAAAAAAAAGAAGGATGGGGCTGATGAGATTAGACTTTGT GGTGGTGGTTCATGATGATGATGGACATGGAGAATGGGGAGGGATTCATCGATGAAGAAGATGAACA
CDS sequence (LotjaGi3g1v0538800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCGTGTTTCATTTACCGCCGCCGCCAAAACCTTTCGCTACGTGCTCCGAAACGGCGTGTCGCCGCCGAA CGTAAACGCTTACAACGTCATGATCCGCGGCTTCGCCGCCGCCGCTGTGAACTTAGAATCAGAATCGGCGGTGGGGGATG CGTCGGGGTTATTGAAAGCAACGACTGAGAAGGGTGTGGAGCCGACTTTCAATGCGATTATTCAGGGGTTGTGCAGGGAA GGTAGCATAATAGAGGCAGAGAAGATGCTTGAGGAGATGAATCGGAAGGGTTTGGCCCCTGATGAGAGGACTTACACGTC TCTCATTCATTTGTTCTGCGACAAGTGGCAGAACGTTAAGGCTCATGAGGTTTTGAATGAAATGATTCTTCGTGGGTTTT CGCCCTCGATTGCTACATACAACGACCTTCTTTATGTATATTGCCGTGGGGGGGGAACGAGGGTTGAGGAGGCTGTGGGG ATTTTGAGGGGCATGGCTGAGAGGGGTTTGTCCCCTGATGTTGTTAGTTATACCACTATTATATCTGGGTTTTGCGTATT CGACCAGGAGGTTGAGAAGGCTCTTGAGATGAAGGTGGAGATGGTTGAGAAGGGTATCTTGCCTAATGCTGCCACGTTTT CAATGCTTATACGAGCCCTGTGCCGGGAGGGAAGACTGCCCGAAGCTTTTGATCTATTCCGAGAGATGCTGTGCGGCGGC TTTTCACCAGATAAGTGTACTTATTTGATGTTGATTAATGCTTATTGTGCTGAAGGTGAATTCAGTAAGGTTTTTCATTT GAATGATGAAATGATACACAAGGGTATTTCGTCTAATTTTGTTACTGGGTTTTCACCGTCTCTTGTCACATACAACGCGC TTATTCATGGGTGTTGTGTTTTGCGGAGGGTTGAGGATGCACTGGGGATTTTGAGGGGCATGGCTGAGTTGGGTTTGTCC CCTGACGCTGTTGGTTATAACACTGTTATATCCGGGTTTTGCAAAATCGGGGAGCCGGGGAAGGCGTATAAATTGATGCT GGAGATGGTTGGAAAGAACATCCAGTGGCTGGATGAAGACACATATGAATCGCTTATGGAAGACCTGTCAGATGAGGATA CTTATTCTAGTTTGATGAATGAGTATTTAGCTGAAGGTAACTTGGAAATGGCTTTTGAATTTGATCGTGAAGTCTCAAAA AATGGTTATTTGCCAAGTCATGTTACCTATAGTGCTCGTTTGAATGGGCTTATTAAGAAAGCTAGGACAACAGAAGCTAA GATGCATCTTTTGTGTATGATTTATAATCAGTGTTTGACTATGCCAAGTTATATAACATATGATACTCTGATAGAGAACT GCAGTAATAATGAATTCAAGAGTGTGGTAGGACTTGTCAAAGGTTTCATCAAGAGGGGTTTACTGAATGAAGCAGCCAGA GCTCATGACACAATGCTTCACGGGAATTATAAGCCAGATGGAGCAGTTTATAATTTGTTAATATTTAGTCATTCTAGAAG CCTTAATGTTGATAAGGCATATAATATGTACAAGGAGATGGTGCATTATGGTTTTGATCCTCATATGTTCTCTGTGCTTG CTCTTATTAAAGCTCTATATCATGTTAGAAGGTACGATGAGACGCGTTGGGTAATTCAAAACACATTGAGGAGCTGTAAT CTCAATGATTCTGAGCTACCTAAAGTACTTGATGAAATTGATGTCAGGAAATTTCAAATTCATGCTCTTCTGTCTGTGCT AGCTGAAATAGCCGTGGATGGCCTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCGTCATCACACCGCTTCTCTC CCACCACCATTATTGTCTTCTTGATTTTTATCATAAAAGGTTTGGTGGAACTGAGTCTCGGATGA
Protein sequence (LotjaGi3g1v0538800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLRVSFTAAAKTFRYVLRNGVSPPNVNAYNVMIRGFAAAAVNLESESAVGDASGLLKATTEKGVEPTFNAIIQGLCRE GSIIEAEKMLEEMNRKGLAPDERTYTSLIHLFCDKWQNVKAHEVLNEMILRGFSPSIATYNDLLYVYCRGGGTRVEEAVG ILRGMAERGLSPDVVSYTTIISGFCVFDQEVEKALEMKVEMVEKGILPNAATFSMLIRALCREGRLPEAFDLFREMLCGG FSPDKCTYLMLINAYCAEGEFSKVFHLNDEMIHKGISSNFVTGFSPSLVTYNALIHGCCVLRRVEDALGILRGMAELGLS PDAVGYNTVISGFCKIGEPGKAYKLMLEMVGKNIQWLDEDTYESLMEDLSDEDTYSSLMNEYLAEGNLEMAFEFDREVSK NGYLPSHVTYSARLNGLIKKARTTEAKMHLLCMIYNQCLTMPSYITYDTLIENCSNNEFKSVVGLVKGFIKRGLLNEAAR AHDTMLHGNYKPDGAVYNLLIFSHSRSLNVDKAYNMYKEMVHYGFDPHMFSVLALIKALYHVRRYDETRWVIQNTLRSCN LNDSELPKVLDEIDVRKFQIHALLSVLAEIAVDGLLLDGGKCSYASASSHRFSPTTIIVFLIFIIKGLVELSLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 611 | 611 | - | – | |
| Gene3D | 6 | 118 | 113 | 1.3E-18 | ||
| PANTHER | 8 | 236 | 229 | 1.2E-100 | – | |
| ProSiteProfiles | 66 | 100 | 35 | 12.047 | ||
| Pfam | 69 | 113 | 45 | 6.0E-14 | ||
| TIGRFAM | 69 | 102 | 34 | 3.9E-8 | ||
| ProSiteProfiles | 101 | 135 | 35 | 10.468 | ||
| Gene3D | 120 | 282 | 163 | 5.1E-41 | ||
| ProSiteProfiles | 136 | 172 | 37 | 10.994 | ||
| TIGRFAM | 139 | 174 | 36 | 0.0029 | ||
| Pfam | 172 | 222 | 51 | 2.0E-15 | ||
| ProSiteProfiles | 173 | 208 | 36 | 10.961 | ||
| TIGRFAM | 175 | 210 | 36 | 7.4E-5 | ||
| PANTHER | 190 | 281 | 92 | 1.2E-100 | – | |
| ProSiteProfiles | 209 | 243 | 35 | 13.165 | ||
| TIGRFAM | 212 | 244 | 33 | 2.4E-9 | ||
| ProSiteProfiles | 244 | 278 | 35 | 10.183 | ||
| TIGRFAM | 246 | 279 | 34 | 4.8E-5 | ||
| Pfam | 247 | 276 | 30 | 0.0044 | ||
| Pfam | 283 | 314 | 32 | 9.4E-7 | ||
| PANTHER | 283 | 369 | 87 | 1.2E-100 | – | |
| Gene3D | 283 | 371 | 89 | 3.2E-22 | ||
| ProSiteProfiles | 287 | 321 | 35 | 12.09 | ||
| TIGRFAM | 289 | 323 | 35 | 1.2E-8 | ||
| Pfam | 318 | 350 | 33 | 2.9E-9 | ||
| ProSiteProfiles | 322 | 356 | 35 | 10.446 | ||
| TIGRFAM | 326 | 354 | 29 | 1.3E-5 | ||
| PANTHER | 371 | 554 | 184 | 1.2E-100 | – | |
| ProSiteProfiles | 371 | 405 | 35 | 10.052 | ||
| Gene3D | 372 | 461 | 90 | 2.1E-9 | ||
| Pfam | 374 | 394 | 21 | 0.65 | ||
| ProSiteProfiles | 406 | 440 | 35 | 5.568 | ||
| ProSiteProfiles | 458 | 492 | 35 | 7.278 | ||
| Gene3D | 462 | 578 | 117 | 8.7E-14 | ||
| ProSiteProfiles | 493 | 527 | 35 | 10.172 | ||
| Pfam | 496 | 525 | 30 | 7.8E-4 | ||
| TIGRFAM | 496 | 527 | 32 | 5.4E-4 | ||
| Phobius | 612 | 629 | 18 | - | – | |
| Phobius | 630 | 634 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0538800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…