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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0549500 |
| Transcript ID | LotjaGi3g1v0549500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNW domain-containing 1; TAIR: AT1G77180.1 chromatin protein family; Swiss-Prot: sp|O80653|SKIP_ARATH SNW/SKI-interacting protein; TrEMBL-Plants: tr|A0A1J7HB65|A0A1J7HB65_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0549500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96645789..96650754) extracted from Lotus japonicus Gifu genome v1.2.
TCCGAACCCACTTACCCGACCCACTCGTGAACTGAACTCCAATGATGAACCCGCGTATAACTATCCATTGTTTCACCTGA ATCTGAACCTCAACGCACCGTCGTCATCATCATCGTCGCCGTCTCCAGGTCCGTCGTTTCCTCCCTTCACTTTCTCTCTA GGTTTAGGGTTTATATTTTCCAACATCTAAGCATATTCAATTTTCTATTCGGAATTAGGGTTCCGCCTCTGTTTTTCTGC ACATAAACTGTTCAGATTCGTCGTTCTTTGATCAATTTTATAAAAACCTATCTCTTAGCTATGTTGATGTTGATTCTAGA TCTTGGATTAGGTCACTGTTGATTTGGAACGTGTTTATTCTCTTGCAGAATCATGGCCGCGTTGAATGAGCTTCTTCCTC AACCGAAATCATCTTCCGCCACTTACTACGACCACAGCAATGACCCATGGTTCAAGCAGAGGTTCACCTCGTCAGAGGAA GAAAAGGCCTCTGCTGCGATCAAGCAGAAGCAGGTGCCGCCATACCTGAAGCGCGCCGGTTTTGTTCCCCGAAGGGTTGA GGATTTCGGGGATGGCGGAGCATTCCCTGAGATTCATGTGGCACAGTACCCTCTTGACATGGGAAGGGACAAGTCATCAA AACCCGGTTCCAAGATTCTTCCTGTGACCGTCGACGCTCACGGGAATGTTGCCTATGATGCCATAGTGAAGCAGAATGAG AACGCTAAGAAAATCGTGTACACGCAGCAGAAGGATCTAATACCGAAGATATTGAAGAACGAAGAAGAATATGGTGACAT GGATGAGGATGAGGATGTGCAGAAAGAGATTGATGAAACCATGCAGGAAACTAAAGCTGCTCTTGAGAAGATAGTTAATG TGAGACTCAGTGCGGCGCAGCCTAAAAATGTTCCCAAGCAATCCTCTGATGCTAAGTATATCAAGTACAAGCCTTCACAG CAAAGCGCAGCTTTCAATTCGGGGGCAAAGGAGAGGGTGATTAGGATGATGGAGATGCCCGTGGATCCGCTCGAGCCTCC AAAGTTTAAGCATAAGCGTGTTCCTAAGGCTTCTGGCTCCCCTCCGGTGCCAGTGATGCATTCACCTCCGAGGCCTGTTA CTGTGAAGGATCAGCAAGATTGGAAGATACCCCCTTGCATTTCAAATTGGAAGAATCCGAAGGGTTACACGATTCCTCTT GACAAGCGTCTTGCAGCTGATGGGAGAGGCCTTCAGGAGGTTCAGATCAATGATAATTTTGCTAAGCTTTCAGAGTCATT GTATGTTGCAGAGCAGAAGGCTAGGGAAGCTGTTGCCATGAGGTCTAAGGTCCAGAAGGAGATGCTTCTGAAGGAGAAGG AAAGGAAGGAACAGGAGCTGAGGGCTCTGGCTCAGAAAGCTCGTTCTGAGAGAACTGGTGTGGCCCCTCCGGCTGCTGTT TCTTTTCCTCCTGAGAAGAGCAGTGTGGATGATGCTGACATGAGAGTTGATTATGATCATCCAAGGGATAGGGAGAAGAA TTTCCCGAAGGAGTCAAGGGAAGAGAGGGAGGATCGGCTGCAGCGCGAGAAGATTCGTGAGGAACGACGCAAGGAGAGAG AAAGAGAGAGAAGATTGGAGGCTAAGGATGCTGCAATGGGGAAGAAGAGCAAGATCACAAGAGATAGGGATCGTGATATA AGTGAGAAAGTTGCTCTTGGTATGGCTACTGCAAAGACAGGGACAGAGGTCATGTATGATGAACGGCTATTCAACCAGGA TAAAGGGATGTCATCTGGGTTTGGCACTGATGATCAGTATAATGTGTATGACAAAGGCTTGTTTACTGCGCAGCCAACAC TCTCAACCCTGTATAGGCCAAAGAAGGATGTTGATAACGAGACTTATGGAGGTGCCGATGAACAGCTAGAGAAGATTATG AAGACTGATCGCTTTAAGCCAGACAAAGCATTTTCAGGTGCTTCTGAAAGGGCAGGTCCAAGGGATAGGCCGGTTGAATT TGAGAATGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGACAGAGGTCAAGAAGGGTAAGAAGGCCATGGAGAAAG TGGGTGGTGGAGGAACTATGAAAGCAAGTGCTGGATCTTCAATGAGGGATGGTTACGAGGGAGGTTCTAGTAGGACTCGC ATTGGATTTGAAAGGGGACATTGAGGAGCTTAGAATTAAATGATGCATATTTCTCATGCTGAGTACTGAGTATTCACAGT GGTGGCTTAGGTTGGTATGCCTTGAAACGAATAGTTGGGATGATGTGGTTGTAGCACTCACGTTTTGGCCACTCCCACCC TCTTCCCCTGGAGCTCGTCTTTTAGGTGGTGAAATAAACTGTTCTTGTATTCTATTTCTGGGTGTTGGTGACAATTTATC TTTCAGTAAGTTATATTGAGTTATTTGTAGTTCAAAGTAGATCTTCTCTATTTGAACTTTGAAGCTATAGTTTGGCTTTG TGATGTAAAATGGTTGTCCAAAGTTTTAACAGCGTTGCAGGATACCCTTCTGATATTTAAATCTGTCATTTTAGAAATTC TATGTTGTTTATCTATAGCTCTTGTCAATATTGTTTAACTTTTGTATATATAATTATTTTTACCGTAGTTTTATATCTAT CATGTTTTATTCTCTTTAGCCTTTATTGAACCTTGTGTTGACTGGTGTTGAAGATTCAGTGTTCGCTTTGACATCCTTAG TTTTTTTCTTCATCTCTGTCTCTCAAGTTTTAATTTTACATTCAGCCCGTTTGGATACTGCCCAGAAGCTCTTCTAAGAG CTTATTTACTTGATTAAGCAGCACTTTTATTTTTTTTAGTGATGTTTGGATGTAAATAGTTAAACAGCTCATAACTTTTG AATAAACTATTAAAACAGCTTAGTCTGAAGCTAATTACAGAACTCCTTGGTTCAGCTTTTTTGGGAAAAGCTATAGCTGA TGATTTTGTTTGACAAAATAACCTTGTAGAAATTTAAAAATTACAACTGAGCCCCACATTGTTACTTGACAAAACCTAGA GGAAAGGCTCACTCTGAGACTGAACCCTAGCTGAGATCGTGCCGCCGTCGCCGTTCATGTCACCGCCACAGATTTTGGCA TCATGGTCACCTGAGGTTCTGTCTACAGATTTGTGAGTTATATTCTTCTTCTTCCATTTTTGATGTTTCTCTATTTTCCA TAGCCAGGATGAAGGTTCTATTTCGTAGCTTCCATTTTTTTTGGAATTGGTTTAGGTTACCATTTGTTTAAATCTTTTGG TTGTGATCGAAGTCCTGTTTTGGTGTCTTGTTTGTTGGTTTGTTTGACTGTTTCACATTATGGTTTTCAGTTTTGTGTTT TTGTGATTATTATGAATGCAAATTTGATTAAGATCTGCTTTGCATTGAGGTTGATTAGGATTTTTGTTGCATAAGTTGTT GACTTTTGTAGCTTGAGATGTTATGTCTTCAATGCAAACCTTTCATTTTACTCAGCGTTGAACTTAGGTAGCAGTCCTTG AGATCCAAAATTTTAACGGAAGATTGCCTCATTACTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCA TCTTCATGTTCTTGATCTCAGTCAACAATGGCTCCCTTGGCATAGGGGTTGGCTGATTGTATGGGACTTGGACACAGCTG CCAAGCTTTATGAATGGCGCAAGCTATAGATCAAGAAGGAGAAGTCTCACCTCCACGCATGTATGCTTCTGTTTCCATGA ATTTTGCCTTTCTAGTCTGATATTTTGTCATCACCATGCGCATTTCAGTTTAAATTCTCGAGAGCAGAAGATGGTGTTTG TTTACTTGTAAGGTCTTGAACTAGATTCTTAACTCAAGTTATTACACCAACCAAACTATTCAGTGGTTAGATTGAACCAC ACATTCAAGTTTGAATTTGTGTATAAGTTTTAATTGATTAAAATTGATATGTTTTTATGGGTTTAATTTAGCTGTAAACT TCTTTATGTTATTTGTAGTTTTTAAACTATTTTCATGTCAAGTCTTCCATTTGCTTAAATTGTTTCTTTTTTTCTCCTCT CTTAGTCTCTTTTTTCTATAAATATGAGATATTAGGGTCTTGCAAAGTATTATGTTTGATTTGAATGAGGATATCATTGT ATAAATTTTCCTACCTCATAAAATTTCTTCTCTGATCATTTCCCATTTTCGGAAGTACTTGCATGTGTTGTCTTTTACAC GGTAAAACTGTCGCTAATATAATCCTACTTTTCATTTGAAAGATGTTTTCTGAAACTTTAATTCAATGGTGATCTAAATA TTTAAGTTTTATTTTATTTCATTAGAGCTTTGCAAGGAATTTACCTCAATCATGCAGTCCAAGTTTCAGCCCAAGGCTGC TAAAGGGGCCTTAAGTATTTTCATTTTCTAACATGAACTGTATTTCTATGTATTGAATGTTGATTTTTCCAGTCTTCATT AACTGACCTTTTTAAATATGATTTGTTTTGTCTCTCATGTTCTGACTCATAGCTGTTTGGATGCAAAGTAAAGAGCACTT ATTAGAATATAGTGCATTTTCTAGTAGATAAACTCTAATAAGCTTGTATCAAAAGTCCACACAGGCTCACATCATTGCTT GTATCAAATAGCTAATGAGATTTTAAAGTCGTGCCTAAAGATAGTAACTGCAAAGAGGATTTCCATGTTCTCCCTCCATC TTGAGGTGTTAATTGGCCCCATTGCTTGCTGCAAGCCTCGAAGGTTCGACCAACAACTTGGAATCCCTGGGGCAGCCAAT AAGATGATGGAGAACATCTTTATAATGTGACATTTCGGCAGTTCTAAGTTTGAAAATTCTTATCACAACCAGTTTAATTG TCTAATTATCTCTCTATGATTGTCTAATGGACTGTCAAGAGTCAATACGCTTGTTCAAAGACACTGGTTCAAAGGTTCAA CCAAAC
CDS sequence (LotjaGi3g1v0549500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCGTTGAATGAGCTTCTTCCTCAACCGAAATCATCTTCCGCCACTTACTACGACCACAGCAATGACCCATGGTT CAAGCAGAGGTTCACCTCGTCAGAGGAAGAAAAGGCCTCTGCTGCGATCAAGCAGAAGCAGGTGCCGCCATACCTGAAGC GCGCCGGTTTTGTTCCCCGAAGGGTTGAGGATTTCGGGGATGGCGGAGCATTCCCTGAGATTCATGTGGCACAGTACCCT CTTGACATGGGAAGGGACAAGTCATCAAAACCCGGTTCCAAGATTCTTCCTGTGACCGTCGACGCTCACGGGAATGTTGC CTATGATGCCATAGTGAAGCAGAATGAGAACGCTAAGAAAATCGTGTACACGCAGCAGAAGGATCTAATACCGAAGATAT TGAAGAACGAAGAAGAATATGGTGACATGGATGAGGATGAGGATGTGCAGAAAGAGATTGATGAAACCATGCAGGAAACT AAAGCTGCTCTTGAGAAGATAGTTAATGTGAGACTCAGTGCGGCGCAGCCTAAAAATGTTCCCAAGCAATCCTCTGATGC TAAGTATATCAAGTACAAGCCTTCACAGCAAAGCGCAGCTTTCAATTCGGGGGCAAAGGAGAGGGTGATTAGGATGATGG AGATGCCCGTGGATCCGCTCGAGCCTCCAAAGTTTAAGCATAAGCGTGTTCCTAAGGCTTCTGGCTCCCCTCCGGTGCCA GTGATGCATTCACCTCCGAGGCCTGTTACTGTGAAGGATCAGCAAGATTGGAAGATACCCCCTTGCATTTCAAATTGGAA GAATCCGAAGGGTTACACGATTCCTCTTGACAAGCGTCTTGCAGCTGATGGGAGAGGCCTTCAGGAGGTTCAGATCAATG ATAATTTTGCTAAGCTTTCAGAGTCATTGTATGTTGCAGAGCAGAAGGCTAGGGAAGCTGTTGCCATGAGGTCTAAGGTC CAGAAGGAGATGCTTCTGAAGGAGAAGGAAAGGAAGGAACAGGAGCTGAGGGCTCTGGCTCAGAAAGCTCGTTCTGAGAG AACTGGTGTGGCCCCTCCGGCTGCTGTTTCTTTTCCTCCTGAGAAGAGCAGTGTGGATGATGCTGACATGAGAGTTGATT ATGATCATCCAAGGGATAGGGAGAAGAATTTCCCGAAGGAGTCAAGGGAAGAGAGGGAGGATCGGCTGCAGCGCGAGAAG ATTCGTGAGGAACGACGCAAGGAGAGAGAAAGAGAGAGAAGATTGGAGGCTAAGGATGCTGCAATGGGGAAGAAGAGCAA GATCACAAGAGATAGGGATCGTGATATAAGTGAGAAAGTTGCTCTTGGTATGGCTACTGCAAAGACAGGGACAGAGGTCA TGTATGATGAACGGCTATTCAACCAGGATAAAGGGATGTCATCTGGGTTTGGCACTGATGATCAGTATAATGTGTATGAC AAAGGCTTGTTTACTGCGCAGCCAACACTCTCAACCCTGTATAGGCCAAAGAAGGATGTTGATAACGAGACTTATGGAGG TGCCGATGAACAGCTAGAGAAGATTATGAAGACTGATCGCTTTAAGCCAGACAAAGCATTTTCAGGTGCTTCTGAAAGGG CAGGTCCAAGGGATAGGCCGGTTGAATTTGAGAATGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGACAGAGGTC AAGAAGGGTAAGAAGGCCATGGAGAAAGTGGGTGGTGGAGGAACTATGAAAGCAAGTGCTGGATCTTCAATGAGGGATGG TTACGAGGGAGGTTCTAGTAGGACTCGCATTGGATTTGAAAGGGGACATTGA
Protein sequence (LotjaGi3g1v0549500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEEKASAAIKQKQVPPYLKRAGFVPRRVEDFGDGGAFPEIHVAQYP LDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENAKKIVYTQQKDLIPKILKNEEEYGDMDEDEDVQKEIDETMQET KAALEKIVNVRLSAAQPKNVPKQSSDAKYIKYKPSQQSAAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPKASGSPPVP VMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSESLYVAEQKAREAVAMRSKV QKEMLLKEKERKEQELRALAQKARSERTGVAPPAAVSFPPEKSSVDDADMRVDYDHPRDREKNFPKESREEREDRLQREK IREERRKERERERRLEAKDAAMGKKSKITRDRDRDISEKVALGMATAKTGTEVMYDERLFNQDKGMSSGFGTDDQYNVYD KGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKAFSGASERAGPRDRPVEFENEEADPFGLDQFLTEV KKGKKAMEKVGGGGTMKASAGSSMRDGYEGGSSRTRIGFERGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 3 | 587 | 585 | 8.8E-269 | ||
| Pfam | 188 | 347 | 160 | 3.4E-73 | ||
| MobiDBLite | 218 | 253 | 36 | - | – | |
| Coils | 315 | 346 | 32 | - | – | |
| MobiDBLite | 334 | 432 | 99 | - | – | |
| MobiDBLite | 364 | 432 | 69 | - | – | |
| Coils | 386 | 418 | 33 | - | – | |
| MobiDBLite | 498 | 546 | 49 | - | – | |
| MobiDBLite | 498 | 552 | 55 | - | – | |
| MobiDBLite | 567 | 603 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi3g1v0549500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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