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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0553000 |
| Transcript ID | LotjaGi3g1v0553000.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COP9 signalosome complex subunit-like protein; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|A0A151TLK9|A0A151TLK9_CAJCA COP9 signalosome complex subunit 4; Found in the gene: LotjaGi3g1v0553000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97043480..97046774) extracted from Lotus japonicus Gifu genome v1.2.
TATACATTTTCCCATCCTCTTATATCCTGTAGAATGAATAAGTTCCCAATCTCTAATTTTCACTTATTGTTTTGTTATAG GTTTTAGTTATTAGAGAGAAACTTGCTGAACTTTATGAATCTGAGGAGCAATGGTCAAAAGCAGCTCAGATGCTCAGCGG TATTGATCTAGATTCGGGAATGAGGTAATCCCTCATATTTATTTGATAATGTAAACTATTATAATCTGTCCAAATTTTAA AATGTTTCTCTTTTACTTATTTTTATTTTGATTTATTTTATCAGGGTGATTGATGATACATTCAGGCTGTCGAAATGTGT TCAAATTGCTTGTCTATATCTTGAGGTATTTACTTCGTTGTGTAAGGAAATCCATACTTGATTGATGTAGCTGCTAAGAC TATATTGTGAAGTACTCATGTCTATATCTATAAATTTTGCATTCTTAAAATATGGCTTGCATATTCTTGTTTCATATCTT CAATAAGGATAATGATCACTTTCCTCATACTCTCATGTATATAAAACGGATAATTATAATGCTGGAAGTATGGGAATGTT TGTTCCTCTTTAAGTATGGATTATACACACACCGACATCAAATCTTTAAGTGTGTGGGGTTTGCTAGCATACTCCCACTG CCACTTGTGTTTTTAGGATGATGTTAACAACCTAGACCTTTAGGATTACCTTAATTAACCAATTTCAATTTGCAACTTCC TAACATACTCCTCTTAAAAATAAGGAGCATGTTAGCGATTTTCTATAATGTTTGCTAATATATCCTGACTTGCTTTATAG AAGGAGTACACCAGTAACTTACAGTTTGGGATTACATAACAAATTTCAAGTAGTAACTATCTATTGCAATCCTTCGGAAA ATAATTGGAGTATGTTTGAAACCCATGTGTGTGTGTGTGTGTGTCATGCCAAAATCACAATAAATTTGAAATAAATTTTG CTTATTTGGCAGGATGATGACGCAGTCAATGCTGAAGCTTTCATCAATAAAGCATCATTCTTGGTTAGCAACAGTCAGCA TGAAGTACTGAATTTAAAGTACAAGGTTTGAAAATGATAGCTGCTGAAGGGTGATTGGGGGTAAAAGATACATACTGAGC CTTATCTTATTCCCCTTTTTTTTCTTCTTTACTTTAGGTCTGCTATGCCAGGATCTTAGATATGAAGAGGAAGTTCTTGG AAGCAGCCTTACGATATTATGATATATCTCAGATTGAGAAAAGGCAAATAGGAGAAGAGTATGTATCTTTCATTTTTTTT TTCTCAGAGGTTTTTCAGAACCATTCTTTTCTGAATGAATAGAATCTGCAGTTCTGCATAGATATATATCTTCGATTCTT TGTGTCATGATGTCTCTTTTTCTTCTGTGGTAAGAATAGTCTCTTTGGGTTGCCAATATAATGATATATTTTTTAACCTA GATTTTATCTTAAAGTAACAATTGTTTTGAATCCCAGAATTGAGCTTGATACTACAATCCAAGTTGCAAACTTCCACTGA TGGTTGATTGCATGATTAATACTTGTGTACCTGATATTCGTGTTAGTGTTCAAGAATCTGTAATATATTTAGCATGTGTT CATAATATATTTATCCTATGTTACTTGTAACTATATCTGGCATGCTATGGTTGTTAGCCAGTTCTCACTTATGCACTTTA TTTATATTACAGGGAGATTAATGAGGAAGCACTTGAGCAAGCTTTATCTGCTGCTGTTACATGCACGATATTGGCAGCCG CAGGACCTCAACGTTCCCGTGTTCTTGCCACATTGTACAAAGTAAATACTTCAATCATAACACAATATACAAATGTGAAA TTTCTGTTTGCAAAATGGTTAAATCTTATCAAATTAATGTTTCTTGTAGGATGAACGGTGTTCTAAGTTGAAGATCTATC CTATACTGCAGAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTTCTCGTAAGGCTTTCCACACAGGTCATATAA TGCAAGTCCCTTACATATTCAGGTGTATTTGGAGAGGATTCTTAGAAAGCCAGAAATTGATGCTTTTGCAGAAGAATTGA AGCCACATCAGGTTATATAAGTTTAGTTTGGATCTTCATATTCTTTGAAGTCATAGTAGATCTGTCTCATTCTCATCCTT TACTTTTCCTGCAGAAAGCTCTTCTTCCTGACAATTTTACTGTGCTTGACCGTGCTATGATTGAGCATAATCTTCTGAGT GCAAGCAAACTTTATACTAATATCAGGTTTGAGAAATTATAATCTCAGTTTGTTGCTTTCCTTATGGCTACATTATTCTA ATGTTAGTTCTATTTATGTATCCCTTTTAAGCCATCTCTTTTCCTGTCTCGCAGTTTTGATGAGTTAGGCACGCTGTTGG GGATACCACCTCACAAGGTATAATATTGTCTCAACAGTTATGCATATTTTCCATTAAAAATCAATAAATACCAGGGGCCC CTATAGAAAGAAACACAGTTCTCTATTGAGTTCCCCATTTCATGTTTCTGATTAAAGTTCCTTATTTGTAATGAAGGTTT ATCTGAATTTAATCGTCAGATTTAAATAATGAATTTTTGTTATCAAAGGTGTAGCATTGTGATAATAGCATTTTTGTAAA TTACTGAATAAGAAGATCATGGACGAGTTTTTTGGATTCAATTTATGTTGATTTTTTCTCGAACATCTCTTTTGCTTTCA GGCCGAGAAGATAGCATCAAGAATGATTTACGAGGATAGGATGAGGGGGTCTATTGATCAGGTATAAATATTAAATAACC ATTACAATCTCTTAGTTTATAGAAGTACCATTACAATCTCTTGTGGGACTGCTTTATAAGAATTCAAGGGGTTTGGGGGT ATGATACTATGATGTTATGGGAAATAGTTATTGACGGCTCTGAGCGCAATTATAAGGTGTTTTTCTGGACAGAGAGAGAT TCAAGCCTATAGTTAACCTCTTTAAAAGGTTATTCTCAACATTTGAATGATTTATATTTCAGGTTGAAGCTATCATACAT TTTGACGATGACACTGAAGAGCTGCAACGTTGGGACCAGCAGGTAATCTATTTTCAATGATATATTATGGCATACATCTA TTTTTAAAAAATATGAATAGCTAAAACTCAGCCGTATTATTTTCCTTTTAAACCATCTCCAACCTCCTCAAGCTTTCATT ATGATGGTTTGCTGTTGCAGATTGTGGGTCTATGTCAAGCTCTGAATGATGTTCTGGATAGCATGGCCAAGAAGGGTGTT CCGGTTCCTGTTTGA
CDS sequence (LotjaGi3g1v0553000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAGCGGTATTGATCTAGATTCGGGAATGAGGGTGATTGATGATACATTCAGGCTGTCGAAATGTGTTCAAATTGC TTGTCTATATCTTGAGGATGATGACGCAGTCAATGCTGAAGCTTTCATCAATAAAGCATCATTCTTGGTTAGCAACAGTC AGCATGAAGTACTGAATTTAAAGTACAAGGTCTGCTATGCCAGGATCTTAGATATGAAGAGGAAGTTCTTGGAAGCAGCC TTACGATATTATGATATATCTCAGATTGAGAAAAGGCAAATAGGAGAAGAGGAGATTAATGAGGAAGCACTTGAGCAAGC TTTATCTGCTGCTGTTACATGCACGATATTGGCAGCCGCAGGACCTCAACGTTCCCGTGTTCTTGCCACATTGTACAAAG ATGAACGGTGTTCTAAGTTGAAGATCTATCCTATACTGCAGAAGGTGTATTTGGAGAGGATTCTTAGAAAGCCAGAAATT GATGCTTTTGCAGAAGAATTGAAGCCACATCAGAAAGCTCTTCTTCCTGACAATTTTACTGTGCTTGACCGTGCTATGAT TGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACTAATATCAGTTTTGATGAGTTAGGCACGCTGTTGGGGATACCAC CTCACAAGGCCGAGAAGATAGCATCAAGAATGATTTACGAGGATAGGATGAGGGGGTCTATTGATCAGGTTGAAGCTATC ATACATTTTGACGATGACACTGAAGAGCTGCAACGTTGGGACCAGCAGATTGTGGGTCTATGTCAAGCTCTGAATGATGT TCTGGATAGCATGGCCAAGAAGGGTGTTCCGGTTCCTGTTTGA
Protein sequence (LotjaGi3g1v0553000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSGIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLKYKVCYARILDMKRKFLEAA LRYYDISQIEKRQIGEEEINEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEI DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAI IHFDDDTEELQRWDQQIVGLCQALNDVLDSMAKKGVPVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 277 | 277 | 4.8E-148 | ||
| PANTHER | 1 | 277 | 277 | 4.8E-148 | ||
| ProSiteProfiles | 75 | 248 | 174 | 21.775 | ||
| Pfam | 151 | 244 | 94 | 3.1E-18 | ||
| Gene3D | 174 | 252 | 79 | 8.5E-32 | ||
| SUPERFAMILY | 175 | 249 | 75 | 7.62E-18 | ||
| SMART | 177 | 260 | 84 | 6.6E-15 | – | |
| SMART | 177 | 260 | 84 | 6.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | COP9 signalosome | A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. |
Expression pattern of LotjaGi3g1v0553000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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