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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0553000 |
| Transcript ID | LotjaGi3g1v0553000.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COP9 signalosome complex subunit 4; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|I1L5P9|I1L5P9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0553000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97043480..97048245) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGTTGATGAATTGTTTGATGTGATACAGTGATGGAGAGCGCTTTTGCGAGCGCTTCTGCGATTACAGACCAGAGGC AAAAGATTGAGCAATACAAACAAATCCTCTCCGCTGTAATTTCATCCAATGATATTGCTCAGGCTCGGAGATTCATTGAT CACAGTTAAACTCCCTTTTTCTCTATCTAGGGTTTTCTAGTTTGTTCTTGCTTTTACATTCAAACATAAATGTGATTTCA ATTATCGAGAACTACCCGTCGAGACGGAAGAATGTCAATATTAGGTTCTTAAAACTATGTGTCGTCTTTTCAGTGTTATC AGATGATGTTCCGTTAGTAGTGTCACGGCAGCTTCTGCAGACTTTTGCTGAAGAATTGGGAAGATTAGGGGCTGGGACGC AGAAAGAGATTGCGCATTACACCCTTACTCAGATTCAGCCTCGTGTTGTGTCATTCGAAGAGCAGGTTTGAGTTTTATGC TTTCAGCTCTACAGTAGTGCTTGCTTCGAACCAACATTGTCTTTCTTAAATAGGACAAGTGTAGATTGTATGCTACTTCC TTAATTGCAATTGCATGCCTGTCCCATAACTTGAAAGCATGTATAGGATACGAGAGATGAATATGATACGATATGGACAC GGGACATCACAAATTTTGAAAATTATAAAACGTTACATGCCTATGATACAACCATACAACACATAAAATTAGAATGATAT GAAAACACACAACATGAATAAAAAGAAGAATTGGAATTCTAAAAGGTGGCACGAGTCATTGTGAACCGAATAAAACACAT TTATGTATTTTTTGTGATATTGTTATCCGTACTGGTATAGAAGTTCAAAAAATAGAAGTAAATTTTTGGTTGAAGAACAA TTATGAGCGTCCGAACTCCAAAATGTCCATGAAGCCCCTCATATTGTTATGAGTCTGATATGGGTATGACATGGACATGA CTTATTTTCAAGTGCCTATGCTTTTCCGGTTTCCCCCCTCACGTTGCTAATAATCAATTGTGACTTTAATTTTCATTTAG TTTAACATATATTCCCTGTTTGTTTGGGTTTAATTTTTGTGATACATTAGATGTGGAGGAAAAAGAAAGAATTAAATTGG ATACTTTAGGTACAACATTTGTGCTATTTTACAGAGGACTGAATAAATGTGGTGAGGTTGTGGTGGGGAGAGGGCAGAAT CACTCTTTTGCTATTACAATCACAAATATGGTGATGCGTGCCAAAACTGTCTTAAAAGTATTTTTATTGCTAATTCAATC AAGGTTTTCAATATGTAGAGATATTGGTTGTTAAGGTGGAGATAACAAAAGCAAGTAAAATAGTTTGTGTTAAGGTTGAT ATATTGTTTGAGGAAACATTTTACCTGTAATTGAAGTCGTTCCTTGCTTCAAGAAAAATCTCTCATCTCATTTAGTTTTT ATTTGATCATCGTCCATTTTATTTTTTCATGTATACATTTTCCCATCCTCTTATATCCTGTAGAATGAATAAGTTCCCAA TCTCTAATTTTCACTTATTGTTTTGTTATAGGTTTTAGTTATTAGAGAGAAACTTGCTGAACTTTATGAATCTGAGGAGC AATGGTCAAAAGCAGCTCAGATGCTCAGCGGTATTGATCTAGATTCGGGAATGAGGTAATCCCTCATATTTATTTGATAA TGTAAACTATTATAATCTGTCCAAATTTTAAAATGTTTCTCTTTTACTTATTTTTATTTTGATTTATTTTATCAGGGTGA TTGATGATACATTCAGGCTGTCGAAATGTGTTCAAATTGCTTGTCTATATCTTGAGGTATTTACTTCGTTGTGTAAGGAA ATCCATACTTGATTGATGTAGCTGCTAAGACTATATTGTGAAGTACTCATGTCTATATCTATAAATTTTGCATTCTTAAA ATATGGCTTGCATATTCTTGTTTCATATCTTCAATAAGGATAATGATCACTTTCCTCATACTCTCATGTATATAAAACGG ATAATTATAATGCTGGAAGTATGGGAATGTTTGTTCCTCTTTAAGTATGGATTATACACACACCGACATCAAATCTTTAA GTGTGTGGGGTTTGCTAGCATACTCCCACTGCCACTTGTGTTTTTAGGATGATGTTAACAACCTAGACCTTTAGGATTAC CTTAATTAACCAATTTCAATTTGCAACTTCCTAACATACTCCTCTTAAAAATAAGGAGCATGTTAGCGATTTTCTATAAT GTTTGCTAATATATCCTGACTTGCTTTATAGAAGGAGTACACCAGTAACTTACAGTTTGGGATTACATAACAAATTTCAA GTAGTAACTATCTATTGCAATCCTTCGGAAAATAATTGGAGTATGTTTGAAACCCATGTGTGTGTGTGTGTGTGTCATGC CAAAATCACAATAAATTTGAAATAAATTTTGCTTATTTGGCAGGATGATGACGCAGTCAATGCTGAAGCTTTCATCAATA AAGCATCATTCTTGGTTAGCAACAGTCAGCATGAAGTACTGAATTTAAAGTACAAGGTTTGAAAATGATAGCTGCTGAAG GGTGATTGGGGGTAAAAGATACATACTGAGCCTTATCTTATTCCCCTTTTTTTTCTTCTTTACTTTAGGTCTGCTATGCC AGGATCTTAGATATGAAGAGGAAGTTCTTGGAAGCAGCCTTACGATATTATGATATATCTCAGATTGAGAAAAGGCAAAT AGGAGAAGAGTATGTATCTTTCATTTTTTTTTTCTCAGAGGTTTTTCAGAACCATTCTTTTCTGAATGAATAGAATCTGC AGTTCTGCATAGATATATATCTTCGATTCTTTGTGTCATGATGTCTCTTTTTCTTCTGTGGTAAGAATAGTCTCTTTGGG TTGCCAATATAATGATATATTTTTTAACCTAGATTTTATCTTAAAGTAACAATTGTTTTGAATCCCAGAATTGAGCTTGA TACTACAATCCAAGTTGCAAACTTCCACTGATGGTTGATTGCATGATTAATACTTGTGTACCTGATATTCGTGTTAGTGT TCAAGAATCTGTAATATATTTAGCATGTGTTCATAATATATTTATCCTATGTTACTTGTAACTATATCTGGCATGCTATG GTTGTTAGCCAGTTCTCACTTATGCACTTTATTTATATTACAGGGAGATTAATGAGGAAGCACTTGAGCAAGCTTTATCT GCTGCTGTTACATGCACGATATTGGCAGCCGCAGGACCTCAACGTTCCCGTGTTCTTGCCACATTGTACAAAGTAAATAC TTCAATCATAACACAATATACAAATGTGAAATTTCTGTTTGCAAAATGGTTAAATCTTATCAAATTAATGTTTCTTGTAG GATGAACGGTGTTCTAAGTTGAAGATCTATCCTATACTGCAGAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTT TCTCGTAAGGCTTTCCACACAGGTCATATAATGCAAGTCCCTTACATATTCAGGTGTATTTGGAGAGGATTCTTAGAAAG CCAGAAATTGATGCTTTTGCAGAAGAATTGAAGCCACATCAGGTTATATAAGTTTAGTTTGGATCTTCATATTCTTTGAA GTCATAGTAGATCTGTCTCATTCTCATCCTTTACTTTTCCTGCAGAAAGCTCTTCTTCCTGACAATTTTACTGTGCTTGA CCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACTAATATCAGGTTTGAGAAATTATAATCTCAGT TTGTTGCTTTCCTTATGGCTACATTATTCTAATGTTAGTTCTATTTATGTATCCCTTTTAAGCCATCTCTTTTCCTGTCT CGCAGTTTTGATGAGTTAGGCACGCTGTTGGGGATACCACCTCACAAGGTATAATATTGTCTCAACAGTTATGCATATTT TCCATTAAAAATCAATAAATACCAGGGGCCCCTATAGAAAGAAACACAGTTCTCTATTGAGTTCCCCATTTCATGTTTCT GATTAAAGTTCCTTATTTGTAATGAAGGTTTATCTGAATTTAATCGTCAGATTTAAATAATGAATTTTTGTTATCAAAGG TGTAGCATTGTGATAATAGCATTTTTGTAAATTACTGAATAAGAAGATCATGGACGAGTTTTTTGGATTCAATTTATGTT GATTTTTTCTCGAACATCTCTTTTGCTTTCAGGCCGAGAAGATAGCATCAAGAATGATTTACGAGGATAGGATGAGGGGG TCTATTGATCAGGTATAAATATTAAATAACCATTACAATCTCTTAGTTTATAGAAGTACCATTACAATCTCTTGTGGGAC TGCTTTATAAGAATTCAAGGGGTTTGGGGGTATGATACTATGATGTTATGGGAAATAGTTATTGACGGCTCTGAGCGCAA TTATAAGGTGTTTTTCTGGACAGAGAGAGATTCAAGCCTATAGTTAACCTCTTTAAAAGGTTATTCTCAACATTTGAATG ATTTATATTTCAGGTTGAAGCTATCATACATTTTGACGATGACACTGAAGAGCTGCAACGTTGGGACCAGCAGGTAATCT ATTTTCAATGATATATTATGGCATACATCTATTTTTAAAAAATATGAATAGCTAAAACTCAGCCGTATTATTTTCCTTTT AAACCATCTCCAACCTCCTCAAGCTTTCATTATGATGGTTTGCTGTTGCAGATTGTGGGTCTATGTCAAGCTCTGAATGA TGTTCTGGATAGCATGGCCAAGAAGGGTGTTCCGGTTCCTGTTTGA
CDS sequence (LotjaGi3g1v0553000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGCGCTTTTGCGAGCGCTTCTGCGATTACAGACCAGAGGCAAAAGATTGAGCAATACAAACAAATCCTCTCCGC TGTAATTTCATCCAATGATATTGCTCAGGCTCGGAGATTCATTGATCACATGTTATCAGATGATGTTCCGTTAGTAGTGT CACGGCAGCTTCTGCAGACTTTTGCTGAAGAATTGGGAAGATTAGGGGCTGGGACGCAGAAAGAGATTGCGCATTACACC CTTACTCAGATTCAGCCTCGTGTTGTGTCATTCGAAGAGCAGGTTTTAGTTATTAGAGAGAAACTTGCTGAACTTTATGA ATCTGAGGAGCAATGGTCAAAAGCAGCTCAGATGCTCAGCGGTATTGATCTAGATTCGGGAATGAGGGTGATTGATGATA CATTCAGGCTGTCGAAATGTGTTCAAATTGCTTGTCTATATCTTGAGGATGATGACGCAGTCAATGCTGAAGCTTTCATC AATAAAGCATCATTCTTGGTTAGCAACAGTCAGCATGAAGTACTGAATTTAAAGTACAAGGTCTGCTATGCCAGGATCTT AGATATGAAGAGGAAGTTCTTGGAAGCAGCCTTACGATATTATGATATATCTCAGATTGAGAAAAGGCAAATAGGAGAAG AGGAGATTAATGAGGAAGCACTTGAGCAAGCTTTATCTGCTGCTGTTACATGCACGATATTGGCAGCCGCAGGACCTCAA CGTTCCCGTGTTCTTGCCACATTGTACAAAGATGAACGGTGTTCTAAGTTGAAGATCTATCCTATACTGCAGAAGGTGTA TTTGGAGAGGATTCTTAGAAAGCCAGAAATTGATGCTTTTGCAGAAGAATTGAAGCCACATCAGAAAGCTCTTCTTCCTG ACAATTTTACTGTGCTTGACCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACTAATATCAGTTTT GATGAGTTAGGCACGCTGTTGGGGATACCACCTCACAAGGCCGAGAAGATAGCATCAAGAATGATTTACGAGGATAGGAT GAGGGGGTCTATTGATCAGGTTGAAGCTATCATACATTTTGACGATGACACTGAAGAGCTGCAACGTTGGGACCAGCAGA TTGTGGGTCTATGTCAAGCTCTGAATGATGTTCTGGATAGCATGGCCAAGAAGGGTGTTCCGGTTCCTGTTTGA
Protein sequence (LotjaGi3g1v0553000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESAFASASAITDQRQKIEQYKQILSAVISSNDIAQARRFIDHMLSDDVPLVVSRQLLQTFAEELGRLGAGTQKEIAHYT LTQIQPRVVSFEEQVLVIREKLAELYESEEQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVNAEAFI NKASFLVSNSQHEVLNLKYKVCYARILDMKRKFLEAALRYYDISQIEKRQIGEEEINEEALEQALSAAVTCTILAAAGPQ RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISF DELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAIIHFDDDTEELQRWDQQIVGLCQALNDVLDSMAKKGVPVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 394 | 394 | 3.5E-195 | ||
| PANTHER | 1 | 394 | 394 | 3.5E-195 | ||
| ProSiteProfiles | 192 | 365 | 174 | 21.775 | ||
| Pfam | 268 | 361 | 94 | 6.2E-18 | ||
| Gene3D | 291 | 369 | 79 | 1.6E-31 | ||
| SUPERFAMILY | 292 | 366 | 75 | 1.41E-17 | ||
| SMART | 294 | 377 | 84 | 6.6E-15 | – | |
| SMART | 294 | 377 | 84 | 6.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | COP9 signalosome | A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. |
Expression pattern of LotjaGi3g1v0553000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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