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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0003800 |
| Transcript ID | LotjaGi4g1v0003800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A5C966|A5C966_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0003800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:691131..695949) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATTCTCTTTATCAGTTCCGTTCCACTTGCTCTCTGCATTTTCTTCTCCTTTCTCTGTTGCACTTTTTCTCTCTTT CCTAAACATTTCTGCAAAGTGCCAAAAATCATAAATTTCTGTCTAAAACATGAAATTTTTTGAATTTTTCTGCTCCTTGT CGGGTTATCCGTCATGTGGGTCCACAACCCTAATCGTTACTGCTTATTAGTCGTTACATACCATGACTTGCCTCTTTTCT TCTCTTCTCCTCCATATCCAATCTTTTAGCTCACTGAGAATCACATTCACAGGTAAGGTAGATAGTATAGATGACATTCA TTCATTCATTCAACTCTTACCACTGTGTCCTAATTTCCCTTCCAAAATTACCAACCTACAATACAATAATGTTCATTTTC TCTATTTAATTTCTTTTCTTTTTATTTCATTGCTGCTGTCAGATAATCACTGCTGCTTTCATAGCCCAGTGCAAGTGTAG TTGGAAGCAACTCATTAGTTCATGATCAGCACCATATAGATTATAGATTGTGGTGCCACTAGCAAGCAGCACTATGGATC CTGTCAATGAGCCCAACAACCCTAATTTTGCTTCCAAGCAGCGTTTACGCTGGACACATGAGCTACATGGACGCTTTGTT GATGCTGTGGCACAACTTGGAGGCCCAGATCGTGAGTTTTTTCCTTGTTCTTCCACCCCAAACATCAAACCTATGTTTGT TTTGTGCTTGTCCAATGTCTTTGAACTGGAAACAAAATAAAATCTTGGGGTAGTAGTTGACACTGAAAATGTGTTTAGAG GGCTTTCCAATGATATTCCAAACATACAGTGAAACATCTACTGACAATGGGGATGGCAACCTCATAACTCCTTGTAATAT CAAATGAGAATTTCCTTTGTTTGAGATAAACAAAAAACCACTGTCTGAGGATTTGGTTGTGAATTGTTAGTCAGAACTCA AGTACTTCTGTTGGCTGGCCTGGATCTCCTAATGTTATTGTTAGATGAGGAATTAATCAAGTTTCTGTGCTTTTCTAATT TATAAATTTGTTAGGATCAGGGTAGACTTGTCAATAGCGCGCTATAGCACCGAAGCGGTGCGTAGCGGCCCTTGGCCACT CCTAGTTGTAGTTGTTCTGTAGCTGTGCGTTTAGTGTAGCGGCTGTTGCGGCCGCTAAAGCAGAGGAAATAATAGCCACA GCGGTGCTATTTGGCATAATTGGTAAGAACCCTAAAAACAACCCTCAAAAGTTCATGTTAGGGCATTTTGGGGATGTATT TCAGGGTTTTTGTATCGTAAACTTACTGAAAATGGTCTATTTTGAGGAGGATGGGGGGGGGGGGGGGGAAGAGATATAGA GCTTCCTTGTTTTTGAGGCAGTTTAGTTTAGAAAATAGAGATTTAAACCTCTTGGTTACCTTGACTTTTGTTGGTAGTGG TACTATATGTTTTGTTTAAGACACCTATGACTTGTTAGGCAGTATTGTCAATCTCGGATAGCAGCGCGTTGCGGCCGACC ACAAAAGTGCTATTGCCTTATAGCGCACAGCAGGGTGGCCGCTATGCTGATTTTTTCGTAAAGTTTATATAATTTAACTA TATACATATAATTGATAATAAATAATCAAAATTCACGGCACTCATAATTAACATTAAAAAGTATTTTAAATTTCAAATAA ACCTTTTTGCAGGTGCCACACCTAAAGGTGTCCTTAGAGTTATGGGTGTAGAAGGCTTAACAATATACCATGTCAAAAGC CATTTGCAGGTAAACTTTAATTTTTGAGCCACTTAACTAGATATTCATAATTGACATTCGTTAATCGTTATTCTATTTGC TTTTTTGTTGCATCCAGAAATATCGACTAGCAAAGTACATACATGACTCCTCATTAGATGGTATGTATATAGGATTTTCA TAGTTTTAAATGTTCTTGTATATATAATTCTGGCTTGCTAATTTGTTGATCCATGTCCATAGAGCAGATTCCTTTACTTT TTATTACTGATTCAATTTGTTTGGTGATACCTTTTTATGTTGTTGATGGAAGGGGAAATAGCCGACAAGAAAGAAACAAC AGATATGCTTTCCAATCAAGATGGTTCATCGTAAGTATAGCTGCCAAATTTTTGTTTTCAGGCTTGAAAAAAGTGGAGAT ATTTACATTAGGATTGCAGCTTGTGTGAAAAGTAAAAACACACAGTAGGGTTACTAATGATTTTCTTATAAACAAAGGAT TACACAAGGGTCGATTTTAAGCCTCTTTCTTTTTAACCTAGTCTTGAATGTGCTTTCTGAACATGTCTCAGTGGTGGTTC CGTGATTTATGCTTTATGCAGAATTGCAGATATGTAGTCTTAGTTGGAATCTCAATACATGAAATAAATGGGAAGCTAAA GATGTGGAGACAAGTTTTGCAAGCACTTGACTTTTATTTAAGTAGAAGTAAAATGGTCTACATGAAATCTAAGTTTAATA GGAGGCACACTAATCCTAACTTTAAGGTGAAAATTGGAGACTATAGCTGACAAGAAGTCACCTGGTATAAGTATTTTGAG TCTATCATACAAAAAGATGAGGAAATAGAGCCATAGGTTTCAAAGTCAAACAGCTAGGATGAAATGAAAAATGCCTCATT GGTTATCTTCTTTCAGGGCCTCAAAACTGTATAAGTGGGGTGAGCAAAAATGAATTTTGCACAAAAAGATCTTGATTGTT TTATGAGGTTTGGTGGTATAAATGACTTAAGTAATTAATGGGGGTTTTTCCCTGTCTGTAGTGGGATGCAAATCACTGAA GCACTTAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAGCAATTAGAGGTATGGTTTTTATTTTGAACTGATTGAAT CACTAAATTAGTTGGCACTTGGAAGACTTTATAATTTGCTATGATTCATGTTGCATTTAATCATGTGAGATGAAGTGCTG TGATGAAATTTCTTATGATTTTTGTCTTTCAAACAAATTGGTTAGTTTTTGTACATTTCTTCTTATTTTTTGTACATCTT TCAAACAAATTGGTTTAGTTATATAAATCATCAAAGTGTAAGTTTTACCATTCATGTTCTATATCTCATTATTAATTATG AGTGGTAATGGTTTTACTGGTGCAAAAATTGATAACAATAATCCCGACTATAGTTGCCCCAAGCTAATTGCATAATAGGT GGTATACAATGTCTACTTGCTGTTGGATAATATAAACCACATGTGTGAATTTCTGAGAACATCAAGTACAAGTTTTATAC TCCCCCTCTTGTGTGTTATATGCAGCAGTCGAAGTTAATTATAATCAAAGAAGAAAAGGGTAAATTAACATGAATCCATT TACAGGGCAACGTTTAACATAGAGATAACAGTCATTGTTATTTTTGCATGAATATTTATTTGTAAACCAAATTTTCACTT TTTCTCATGATTTATTTAAACATTTGTGCAAATCATCTCATATTAAATAGCACAGCTCATAACATATTAACGAGATGTTT TCTGGAGATCGTTTTAATTTACCCCTTCATTAGATAGTAAACTAGTTTCTCTGCAAGGAATTATTTAGTAGATAAGGTTA TATTTCGTTTTAACAAATACTGCACAGATAATTCTCTTACAGGAACAGATAATAAGCACACTAGTCATCATCATATACCA ATCCTCCTTTAGGAAATTGTTTAAACATTGTATGTGTTTGTGTGCAAATCTAGAGTATACCAGTGACATTTCTGGATGCT TCTTAGCACTTAGCAGCATTTTGGAAAAATAAAAAATCTATCTTCTTGTAAATACAAATAAACACTCCCCCTCCTTTGAA GTTCCTTGAATAAAAACAAAAGCAGAACACATAGAATGTTGAATTATGGGCGAGGTGGGAAGATTGCAAGTAAATTTTTT TTTCTTTTCTATTTTGTAAAATATGTGAAATAGGTGCAAAGACAGCTGCAATTACGGATAGAAGCTCAGGGTAATTACTT GAAGAAGATTATTGAAGAGCAACAGCGTCTCAGTGGAGTTCTTTCAGAAAGACTTGACTCTGGGATTTCACCTCTGGTTC CAGGAGACATGTGCCAAAAAGATGGTAACAAGACTGACCCAACAACGCCTGCCCCATCCTCTGAGTGCCCCCTTCTGGAA AAAGCTGCTAAAGAGCGTGCACCAGCTGAGAGCCTGTCCATCGGTGAATCTTTTTCATCTCACCATGAACCAAGGACACC TGATTCCTGTTGCCATGGTGGTTCCTCTGTTTCCAGCCCTGAAGGGGAGATGTCAGCAAAGAAGCAACGGGTGAGCTTAT TATAAACCGGACACGGTGCTTCCGCATCAGGTACTTGTGTCAAGTGTGTCATATCAGTAACCATGAAGTAGTTGGGAATT GGATCAGGCTGGTTGCTGTGATCTGCGATTTATTGTAATTTCCAGCTTGTGTACTAGGACTGATTTTTTTTTTCACCGTT TAAGTGTTATTTTATTGGGTATAGCCTATATATGTATGTAATCTTGTAAGTTATGGAACCTGATCATGTTTAGATTCCTC AGATTGTTAGTTTTCAGCTCAATACTTCACCAAATACCCCAGATTTTAAATGCATTCAGTACTCTGCTTGAATTGGGTTA ATATTGGGTCATTTAGAAGTATATTGTCAGCTGTTCCATAAAGCTATAAAAAGCACAACAACCCCAGAAGCCAGAAAAAC GATTATGTGGCTCCCAACAGCAGAAATAAATTATATAAAAAAGGGTAAAGTATACTATTGTTCCCGGTCAAATTATAAAT ATTTTTAGTCTTTTAAAAT
CDS sequence (LotjaGi4g1v0003800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTGTCAATGAGCCCAACAACCCTAATTTTGCTTCCAAGCAGCGTTTACGCTGGACACATGAGCTACATGGACG CTTTGTTGATGCTGTGGCACAACTTGGAGGCCCAGATCGTGCCACACCTAAAGGTGTCCTTAGAGTTATGGGTGTAGAAG GCTTAACAATATACCATGTCAAAAGCCATTTGCAGAAATATCGACTAGCAAAGTACATACATGACTCCTCATTAGATGGG GAAATAGCCGACAAGAAAGAAACAACAGATATGCTTTCCAATCAAGATGGTTCATCTGGGATGCAAATCACTGAAGCACT TAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAGCAATTAGAGGTGCAAAGACAGCTGCAATTACGGATAGAAGCTC AGGGTAATTACTTGAAGAAGATTATTGAAGAGCAACAGCGTCTCAGTGGAGTTCTTTCAGAAAGACTTGACTCTGGGATT TCACCTCTGGTTCCAGGAGACATGTGCCAAAAAGATGGTAACAAGACTGACCCAACAACGCCTGCCCCATCCTCTGAGTG CCCCCTTCTGGAAAAAGCTGCTAAAGAGCGTGCACCAGCTGAGAGCCTGTCCATCGGTGAATCTTTTTCATCTCACCATG AACCAAGGACACCTGATTCCTGTTGCCATGGTGGTTCCTCTGTTTCCAGCCCTGAAGGGGAGATGTCAGCAAAGAAGCAA CGGGTGAGCTTATTATAA
Protein sequence (LotjaGi4g1v0003800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPVNEPNNPNFASKQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHLQKYRLAKYIHDSSLDG EIADKKETTDMLSNQDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGNYLKKIIEEQQRLSGVLSERLDSGI SPLVPGDMCQKDGNKTDPTTPAPSSECPLLEKAAKERAPAESLSIGESFSSHHEPRTPDSCCHGGSSVSSPEGEMSAKKQ RVSLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 3.9E-116 | – | |
| PANTHER | 1 | 243 | 243 | 3.9E-116 | – | |
| ProSiteProfiles | 12 | 72 | 61 | 12.073 | ||
| Gene3D | 12 | 72 | 61 | 5.3E-27 | – | |
| SUPERFAMILY | 14 | 69 | 56 | 1.67E-17 | ||
| TIGRFAM | 15 | 70 | 56 | 2.1E-25 | ||
| Pfam | 18 | 68 | 51 | 2.7E-7 | ||
| Pfam | 101 | 147 | 47 | 2.1E-22 | ||
| Coils | 104 | 124 | 21 | - | – | |
| MobiDBLite | 157 | 245 | 89 | - | – | |
| MobiDBLite | 222 | 236 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0003800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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