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LotjaGi4g1v0008900.1

Overview

Field Value
Gene ID LotjaGi4g1v0008900
Transcript ID LotjaGi4g1v0008900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:1208539..1216723) extracted from Lotus japonicus Gifu genome v1.2.

GTTGAATTGAAATTGAGAACAAGAGAATCATTCAGAGAGAGAGAGAGAGAGAGTTGTATGAAACCCTAATCTTTCTCTGA GAAGTGACAATGTCGATGGACCTGTTGCTGAAGCCTTCTTGTAGCGGTTGTGGATCAACCACCGATCTCTATGGAAGCAA TTGCAAGCACATGACTCTCTGCTTGACCTGCGGCAAAACCATGGCGGAGAAGAAAGCCAAATGCATTGATTGTGGCGCAA CCCTCACTCGCTTGATTAGGGTTCGATTTTCTTTCTTTCCCCTTTTTGCAATTTCCATACTAGACCTTCTTGTTAGTTAT TCTAATCTTGTTTCGTTTTCAGTTTGTTGCAGTGACGTGATTGATTCATTGATTGAATGATTGATTAACTTGTGAAAATC CCAATTAGGACTCGTATAGCGTTATGCATTGCCTTGTGACCTTGTCCGTGCTTGTTTATTGGATGATGTAGAGGGTTAAT GTGGTGTTTGTCACAGGAATACAATGTTCGTGCAAGTTCTGGCAGTGACAAAAACTACTTCATTGGACGATTCATAACCG GGTTGCCTGATTTTTCCAAGAAGAAAAGTGCTGAAAACAAGTGGTGCCTTCAGAAGGATGGACTGCAAACCCGCCAAGTT ACCGATGCTTTGCGGGTATAATTGAATATATCCCTAATCTGCGTCTGGAATGCATCTGTCTATGTATGATGATGCCATCA CTGTAATACAATGTATGAAACTGACATTAAAATTAATATACAAATACTTGATAAAAAAGGAATTTATTTTTGAAAGCAAA GCATAAGTAATAATAAAATGCTGAAATTATTGTGGTATTCTCACATATATCAGTATAAAGGTTAAGAAAAATGGACATGG GTCTGATATGGATATACAAGAATATGGCTGGCTACTATCTTCAAGTATTTGTCCTGAATATGCAAAAGTTGTTCCCTCTT TTTAATCATCATTAGGGCTGTTTTGCATGTAAGTCTAAAAGGAGTGCTTAAGCACCATATTTCACAAAGGAAATGCCAAC TAAAAAGTAACAAACTTGTAGTAATGGACAGTGGGGATACTGTGTTGTTTTACTAATAATTGTGTGGCGCATTATGCCAC GGTCCATTTAGACTATTTTAGAGTGAGGGGGACATTAAAGACGATTCTATTTTAGTCATCTTGGCAATATGTAATTACTG GTTACTCGTGATAGATCATAAGTTTATTTCCTGAATAACTTTTATTACGGTATACAGGAGAAGTACAAGAACAAGCCGTG GCTCTTAGAGGACGAAACTGGTCAGTCCCAATACCAAGGTCACCTTGAAGGGGCACAGTCAGCTACATATTATCTGCTTA TGATGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTAAGCTTGCTGAGTTAAAGAATAACGATTTGGTTTG TCTGCGAGAATGGTCCTATGGTGTTAGCTTGTTTTTTCTTTCACTTGGGATTTTTTATTTTCTTCATCTGGTCTTTTCCT ATGGTCAGATGTGTGAGAACTGATCTGGTGTTCTCTTCAATCATCATCATCTTCTTCTTTTTCTTAAATTTTAGGTACAA CTTTAACAAGGTTGCTCAATATAAACAATTGACATTAGAGGAAGCAGAAGAGAAAATGAAGAACAGAAAGAAACACGCGG ACGGGTATGAAAGATGGATGATGAAGGCTGCAAATAATGGGGCTGCCGCATTTGGTGTGAAGGTTGAAGACAAGGAGATC AGTGTGTACGGAGGGAAAGGCCGTAAAAAAACTAGTGAAGATGATGAAGGTCATGTCTCAGATATTGGAGAGGAGGATGA AGAAGAGGAGGCAGGAAGAAAGACTAGACTTGGACTTAATAAAGGAGGTGACGATGATGATGAAGAGGGTCCAAGGGGGG GAGACAGTGATGTAGATGATGATGATGATATTGAGAAGGGTAAGTACTAGTCTTGTTGTCTTTTTTAGCTCTGAAGGTTA TTATTTTATTTCTAGTTTGGTTTAGGCAGTGATATCCTATTTGATTTGTATTTTGCCATGATTAATCACTATAGGAATTT ACATCTACTGAGTTCTGACACACACCAGCTCATATAGTGGAAAGAGTAAATATTGACCCTACATCCTTACATAGATAGTC AAGGTTATAAGTTATTAATGGTCATAGACTTTATATTTTAATCTTTATCATTCATGGTTTGACCAAATGGTCAAATTTTG CTCTTCTCACCCTCACATAGATAAGGCTCTCTCATCTTATATGTTCACTACACACACACACACACACACACACATAGAGA GAGAGAGAGCTGTGTGTGTGTGTCATGAATCAAGTGTCCCAAAAGTTGTTGGGTGAAGAGTGAAGATACATGAATGACTT CATATTACATTTCTAATACCCCTCTTCATATAAGAGCCCTTTAGGCTTGAAGCATTGATAATGCACATATCCACCTATCT TGCGCTGAAATTCAACTTTTTTATTAAAAGAATGAGGACAAGAAGAATCAAACTCTAAACCAATTGCTTTTAGAGACTTT GATGCCGTACCATGAACCAACTATCTTAAAAGTTTAAATTGTTTGGTGAAGACACAATAATGAGTAGAGATATTGACTTC AAAGTCCTTTTAAAGGGTTGGTAATTCCCACACCTTAGCTAGCTTTTGAGGTAGAGTTAGGTTTGGTCTAAATTTTCCAG ATGGAATCCGAGTCTATAAAAGACTCGTAATTTTACCACCCATGACGGGCCATCTGCAAAAGTTTCAAGAATTAGATTTA GTCATGATAGCTTGAGAAAAATTAGTGAAGTTAATTTGTCTCGTGACTTTTCTACGAAAGTAAATCAAAGTCAATCTCCG TTGAAGATATTCCATGATAGGCGTGAGGGCAATCTAAATAATACTGGGTTTGCGATCTCGACGCCCTAAATGTCCAGCCT TGGGCATGGTGGGTGTGTGGTTAGGTTCTGCATAGACTAGAGATATGTGCAAAGATATTCCATGGTTAGGTTCCCCCTTG ATTGCTTTATTATTTTGGATGTGTATGCCTAGTGGAGGATATAGCTTAGAGTAAATTGCAAGTCAAATTGATTACTAAAA TGAATCAAATTTAGGCAGTTGAGACTTGAGACTTCATCTCATTTATGTTTTGAGGTATTTATTTTGGCCTTAGAGGCTTA GTTGCAGCTGGTAGCAAAACTGGATCACTTGCAGTTTTTTAGTACCTGTGTTGGTCTACCACTTGCTGATTTTATAGTGA GTAACTGATGCGACTATTGACTTGATTGGTGATGGGTCTATATATTTGGTGTCCTACGCTAGAGTGACCCGTTCTATTCA AGTATTTAGTCTTAACTTCGCCAAAATTGAATTCATTTTTAGGCTTTTTTATAGTTTGTAATCTTGTTGGAAGCTTGAGG AGGAACACTTCATCAGGTTTATGCTTAATCTTTCTGCTGATTATACCTCTTCATAACTTCCAGGCGATGACTGGGAGCAT GAAGATATTTTCACTGATGATGATGAAGCTGTTGGCAATAATCCCGAGGAAAGGGAAGATTTGGCTCCTGAAGTTCCTGC TCCTCCTGAAATCAAGCAGGTTAGTTTCAAATTTCTCAAATACTGTTGACTAAGAAGTTTGATGTTCTTAGGACTTAGGA TGATGTTTTTTTCCCAATATATTTCCATTTACTTGTTGTAGCTACTTCAAGGAATGTTATCGAGATATATTTTATATAGA TTTAGTTATAGATGTCAAATTGATTGTGATATAGTAGCTACTTCTTTTTGGGCATTTTTCTGTAACCATCTCTAGAGGCT ATATATTCTTACTGCATGCGAAGAATCTTTGTATCAGAAGAAAGTGAACACAAAATCAGGAAATATTGTTCTTGGTGAAA CAACTTTAAAATAATAATACACCCAACCATTTATAGAGGAATTTCATCCAGAAGGGTACCTTCATAGCGCAGCACATCCT ATTTGTGAATCCAGTATTAGAATGTCAGGACTTGACTAAACTAGATTTTTTTTTTCCTACAGGTTTTTACCGTCTTTTCA TTTTCTGAGTTCCTTTGTTTCCTTTTCTATCATTGTCCATTCAGTCAATTTCTAATATCCTTTTTAGTTCTATCTATGTT CCTGTACTCTTTTTTTCATGTGTTCAATTACTTTGCAACCTAGCTTTAGAAACCAACCCTCAAAATAGGGATTATTGATG TATCATTGCTTGTTGTATTGATTTTTGGAATATAATATAAAAAATGACTGGTTGGAAAACTCCCAAATTTAGTTTTTTCT TAAGTTTGGATTTATATAAACCTTGTTGAGTTTCCCGCCCTTTAATTTAGGATGAGGAGGAGGAGGAGGGTGAAGATAAT GAGGAAGGGGGAGGTTTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTACTTGGACGTTCTAGTGGTCTAAATGAATCTGA TGCTGAGGATGATGACGATGATGAAGAGGTATGGTTTTTTTTTCTTATCTTTTATTACACTTATGCAATTTTTAGTTATT TTTTGGTAGATGCACCTATAATTGCTGAAGTGTTCTTTGTGGCACTAATAATATGAAAAATAAATATAACTTTATGCAAA CTTTAATCCCCTTTCTCTAAAAGGGGAATTATCTGATTTGAACAAATAGCTTGGATGGGTAAATTGGCCTTGAGAATTTT TATCCATTAATGGCCTATTTGATTTATCTAGATGGATGATGAGGTTGGCGTTCCTCTTGTGAGTGCTTCAAAGCAGAAGG ATGCACTTAAGGAAGAACCTGCTGACAATAGCCCTTTAAAACCTGGAGCTACTACTTCAAAGTCTTCAAAAGGGAAGAGA AAAATAAATGAGGAAGCAAAAACATCTAATGGTGCACCACCAAAGAAGGTGAAAACAGAAAATGTATGTCATTTCTTTTC TGATCATCCTTTGCTTTGTATTTTTTAGAATTCGGCTTAGGCCTAACTTTACCCCAAAAGCTAGCTTAGGGGTGAGGATT GCTCTACCCTTTATAAGGACTATTTTGGTCACATCTCCAATCCATGTGAGACTTCAACACACTCCCTCACTCAGGGCTGG ATATCTGGAGCGTGGAACTTGGAAGATTGAACATCTATGGATTGCCCATGTATAAGTAGTCTCCAATAAACAGATTTAGG ATAAGCTCTAATGCCATCTTAGAATTTGGGTTAGGCCTAACTCTACCCTCAAAAGCTTGTTTAGGTGTGAGAGTTTCTCT ATCCTTTATAAGGAGGACTATTTTAGTCATACATATAGTCAATACAGGATTTCTCAACATAATAATGCCTTTAATTTTGA TCTATGGGCAAAAGAGTTTTAATTGTCATCCAGCTATGTGATGCGAATGTGACATCATTAATAGTGTTTACCTGTAATAA CAATTAACATCTAAAAGTCAAATAATTTTTAATGATGTGGCAACACTTGGTTTAATGATAGTGTAAAAGAATTTTACACA AACTGCTTAGTTTTAAATAAAGTTTAACTGCTTTGGTAGGTTTTTAAAAAAATGCAGAAATGATTAAGCTTGTCTTAGCT TATATTATTTTGAGAAACTATTTTTCAGGACTGTTAAATGGGAAGGTGTTTTGAGAAGATTTTGACAAAATTTCCCCATA TTTGGCTCTGAAAAACTTTACAGTTAATGTATCCAAAGGCAATATACAGCTTCTGCTTGTTGTATTGGAGCATTTCCAAA AAGCTCTTATTGTCAGACTCAAATCACTTAATTTGAAAGCTAACCCAAAAGGCTTTCCTGTTAGTGTTAATGAAATTCTT CATTATTTCATTGCCATTGAACCAGGAACCGAAATTATCTGTCAAAGATGAAAATGGGTCTGCAGTTAAAAGTAATGCTC CTCCAAAAGGTGTACCGCCTGCACCATCATCAAAAGCAGGGTCTTCCACCACTGCTTCTGGACCTGTGAGCGAGGAAGAA ATCAGGGCTGTTTTAATGCAAAACACTCCAGTGACAACACAGGATCTTGTTGCTAAATTTAAAGCAAGACTAAGATCACC AGAGGTTAGCTCTATCTAAAAGTTTTGATCTACCCTTTATTCAGCTGCATTTGTTTGCTTAGTCATTCTTACGACCAATG TATGTATGACAGCATCTCAATATGTTGTATCATCTTAATCAAGTTCTTCTTGTCAAATTTAGGTTTGAGGAAAAGAACTT GATTGTTAAACGTCACTTAAATTCTGTAGACCAACATTTTATTCTATTTAGAATGAATTTGTGACTGGCTAATGTCAGAG TAAAAGGATGTCATTTAACAATAGTTTATGGTAGTTTAGGGAATAAATGCCTTGTTCCATTTTCAACAGATGTGTAGCAT GTAAGAATAAGAAATATGACCCCTTGTTCTTAGCTTGAGACCTCCTAAGATTTAAAGATAGTCTTTTGTCATACTCTTCC AAGGTTTAATACATACACTCAGCTTCTTTACTATGTGCAGGATAAAAAGGCTTTTGCTGATATCCTGAAGAGAATCTCCA AGATACAGAAGACTACCAGTGGCGCCAGTTATGTTATTTTGAGAGATAGGTAACAATGTAGTACCCTTTGATAGGTTGTG CTGGACAACACATTAGCGTTTGTACTTTTGTCAGTGATGACATGTGAGGCGTTATATAGCGAGAGAGATTATTCAAGGCA CCTTGTGTAATACATTGCAATATTGTACTCGGAAATAGTAAAAAAAAAAAATTATAATGACAAAATGAGAGCGCAATAGA TTGGCACAAGAGAGACTACCCTATAAACTAAGAGCATGTTTCTATAGCGATTTTTTTATGTTTCGGTTAAAAAGAGGTGA TAGCATCTACCATAACATGTTTATCTTGTCTGCATATTTTTCTGTTGAGCAAAAAATGTGTTTTCAAACTTTAAAATATG TGTATAGAAAAAATGGTAGTAGTAACTTCTTTATCAAGTATAAGCATGTTACTTGTCATTTTATGAGATTAGCCACTTTG AGACTTAACATTTATATTATAGGTTTCCGCTAGCATGAACTAGTGAATTGGTCTTTCTTCGTTAGAAGAGAGCCATTTTT TGTTTGAACAATCGAAGAGAGCCATTGACTGTTAGATTTAGATTTAATAGTATTTTTAATGAATGGCCATGATTTATCCT CGGCTACTGTTGTAGGAGTGCACTGATTCATCCCTCTTTACACAGGCAAACGAGGAGATCAGCGTTCGAGCCTAGGCCTA GCAGTCTCTCAGTCATGTCCAAAGCAGAAGATCTATAATTCCCAGTGATTTTTCTGTATGTCCAAAGCAGAAGATCTATA ATTCCCTTGATTTTTCCTTTTACAGATCGTTCTTGATTTTCACATTGTTGTTGCTGGTAGTTTTGCCTTTGCCATCTTTG TGTTGTTGCTGGTAGTTTCTAGACACAACCCTTAACCATCATCTTTGTGTGTTGAATGTGAACAATGATGATTGTTTTTT AGAATTCTTCCGGATAAATTAAGGTTTGCTAAAAATATTAGGTACATAGAGTGGAGGGTTTTTTTTTTTTTTTGAAAGTC ATTATACGAAAAGGTAATGATTTTTATAAATTCGAGAAAGTCATATGTTAGGATAATATCTTTAATGAGAGAAATACGGA CAATTTTATTTAGAAGTACAAATTAACCATTAAATGATTTAGTAGTCACTACATCCTTGGAATCCAATCACAAAACACAT GAATATGTATGCAAGACCATATTAACAAACTTCAAACTTTGGAAGAGACAAATACATGAGGAAGAATATGCACTGCAAGC CTGAAAGCAGGTTCCTCTGCAGAAGATTCAAAGGAATTTTCTCTGCAGTTAGGTCCCATTGGGGAGAAAAATGAGCCTTC ACTTTCACTTTCACCCTTATAAGGCTTCTTCTGTTCCTGTGATGAGCACAAATAGGCTTTTTTGCAATAAGTCCTCTCTG GTGTGTAATATTTAACAGTGTGAGGAAGTTTGAATCTTACACTCTTTTGAGATTTCCCACTTAAGCTTTTGCAAATCAAG GAACAATTTGACATATCTTCAGATTCTTCATCGTGGTTAATGGGTCTGTCTAAACATAAACTGTCTTTGGTTTCACTTAA CAAAGATCCAAGGAATTGACCTGAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0008900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGATGGACCTGTTGCTGAAGCCTTCTTGTAGCGGTTGTGGATCAACCACCGATCTCTATGGAAGCAATTGCAAGCA CATGACTCTCTGCTTGACCTGCGGCAAAACCATGGCGGAGAAGAAAGCCAAATGCATTGATTGTGGCGCAACCCTCACTC GCTTGATTAGGGAATACAATGTTCGTGCAAGTTCTGGCAGTGACAAAAACTACTTCATTGGACGATTCATAACCGGGTTG CCTGATTTTTCCAAGAAGAAAAGTGCTGAAAACAAGTGGTGCCTTCAGAAGGATGGACTGCAAACCCGCCAAGTTACCGA TGCTTTGCGGGAGAAGTACAAGAACAAGCCGTGGCTCTTAGAGGACGAAACTGGTCAGTCCCAATACCAAGGTCACCTTG AAGGGGCACAGTCAGCTACATATTATCTGCTTATGATGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTAC AACTTTAACAAGGTTGCTCAATATAAACAATTGACATTAGAGGAAGCAGAAGAGAAAATGAAGAACAGAAAGAAACACGC GGACGGGTATGAAAGATGGATGATGAAGGCTGCAAATAATGGGGCTGCCGCATTTGGTGTGAAGGTTGAAGACAAGGAGA TCAGTGTGTACGGAGGGAAAGGCCGTAAAAAAACTAGTGAAGATGATGAAGGTCATGTCTCAGATATTGGAGAGGAGGAT GAAGAAGAGGAGGCAGGAAGAAAGACTAGACTTGGACTTAATAAAGGAGGTGACGATGATGATGAAGAGGGTCCAAGGGG GGGAGACAGTGATGTAGATGATGATGATGATATTGAGAAGGGCGATGACTGGGAGCATGAAGATATTTTCACTGATGATG ATGAAGCTGTTGGCAATAATCCCGAGGAAAGGGAAGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGAT GAGGAGGAGGAGGAGGGTGAAGATAATGAGGAAGGGGGAGGTTTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTACTTGG ACGTTCTAGTGGTCTAAATGAATCTGATGCTGAGGATGATGACGATGATGAAGAGATGGATGATGAGGTTGGCGTTCCTC TTGTGAGTGCTTCAAAGCAGAAGGATGCACTTAAGGAAGAACCTGCTGACAATAGCCCTTTAAAACCTGGAGCTACTACT TCAAAGTCTTCAAAAGGGAAGAGAAAAATAAATGAGGAAGCAAAAACATCTAATGGTGCACCACCAAAGAAGGTGAAAAC AGAAAATGAACCGAAATTATCTGTCAAAGATGAAAATGGGTCTGCAGTTAAAAGTAATGCTCCTCCAAAAGGTGTACCGC CTGCACCATCATCAAAAGCAGGGTCTTCCACCACTGCTTCTGGACCTGTGAGCGAGGAAGAAATCAGGGCTGTTTTAATG CAAAACACTCCAGTGACAACACAGGATCTTGTTGCTAAATTTAAAGCAAGACTAAGATCACCAGAGGATAAAAAGGCTTT TGCTGATATCCTGAAGAGAATCTCCAAGATACAGAAGACTACCAGTGGCGCCAGTTATGTTATTTTGAGAGATAGGCAAA CGAGGAGATCAGCGTTCGAGCCTAGGCCTAGCAGTCTCTCAGTCATGTCCAAAGCAGAAGATCTATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0008900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSMDLLLKPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAEKKAKCIDCGATLTRLIREYNVRASSGSDKNYFIGRFITGL PDFSKKKSAENKWCLQKDGLQTRQVTDALREKYKNKPWLLEDETGQSQYQGHLEGAQSATYYLLMMERKEFVAIPAGSWY NFNKVAQYKQLTLEEAEEKMKNRKKHADGYERWMMKAANNGAAAFGVKVEDKEISVYGGKGRKKTSEDDEGHVSDIGEED EEEEAGRKTRLGLNKGGDDDDEEGPRGGDSDVDDDDDIEKGDDWEHEDIFTDDDEAVGNNPEEREDLAPEVPAPPEIKQD EEEEEGEDNEEGGGLSKSGKELKKLLGRSSGLNESDAEDDDDDEEMDDEVGVPLVSASKQKDALKEEPADNSPLKPGATT SKSSKGKRKINEEAKTSNGAPPKKVKTENEPKLSVKDENGSAVKSNAPPKGVPPAPSSKAGSSTTASGPVSEEEIRAVLM QNTPVTTQDLVAKFKARLRSPEDKKAFADILKRISKIQKTTSGASYVILRDRQTRRSAFEPRPSSLSVMSKAEDL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13011
1 530 530 2.8E-218
IPR008851
Pfam
PF05793
48 530 483 5.9E-138
IPR008851
SUPERFAMILY
SSF50916
53 183 131 3.4E-32
IPR011039
MobiDBLite
mobidb-lite
218 474 257 - –
MobiDBLite
mobidb-lite
243 262 20 - –
MobiDBLite
mobidb-lite
263 300 38 - –
MobiDBLite
mobidb-lite
355 370 16 - –
Gene3D
G3DSA:1.10.10.10
453 531 79 3.9E-9
IPR036388
SUPERFAMILY
SSF46785
463 531 69 6.26E-18
IPR036390
MobiDBLite
mobidb-lite
535 555 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of
GO:0032968
Biological process Positive regulation of transcription elongation from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0008900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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