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PF05793

Source: Pfam

Description

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of
GO:0032968
Biological process Positive regulation of transcription elongation from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Subterm of
Positively regulates

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj4g3v0120130.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj4g3v0120130.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj4g3v0120130.3
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
Domains
11
Lj6g3v1766610.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X1 [Cicer arietinum] gi|502079291|ref|XP_004486214.1|
Domains
8
Lj6g3v1766610.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X2 [Cicer arietinum] gi|502079294|ref|XP_004486215.1|
Domains
6
Lj6g3v1786680.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356532499|ref|XP_003534809.1|
Domains
7
Lj6g3v1786680.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356532499|ref|XP_003534809.1|
Domains
7
Lj6g3v1786690.1
– Transcription initiation factor IIF subunit alpha [Medicago truncatula] gi|357447861|ref|XP_003594206.1|
Domains
3
LotjaGi4g1v0008900.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi4g1v0008900.2
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi4g1v0008900.3
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
Domains
10
LotjaGi6g1v0287300.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A151T6L6|A0A151T6L6_CAJCA Transcription initiation factor IIF subunit alpha; Found in the gene: LotjaGi6g1v0287300
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 8.33