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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0008900 |
| Transcript ID | LotjaGi4g1v0008900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1208628..1215151) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGATGGACCTGTTGCTGAAGCCTTCTTGTAGCGGTTGTGGATCAACCACCGATCTCTATGGAAGCAATTGCAAGCA CATGACTCTCTGCTTGACCTGCGGCAAAACCATGGCGGAGAAGAAAGCCAAATGCATTGATTGTGGCGCAACCCTCACTC GCTTGATTAGGGTTCGATTTTCTTTCTTTCCCCTTTTTGCAATTTCCATACTAGACCTTCTTGTTAGTTATTCTAATCTT GTTTCGTTTTCAGTTTGTTGCAGTGACGTGATTGATTCATTGATTGAATGATTGATTAACTTGTGAAAATCCCAATTAGG ACTCGTATAGCGTTATGCATTGCCTTGTGACCTTGTCCGTGCTTGTTTATTGGATGATGTAGAGGGTTAATGTGGTGTTT GTCACAGGAATACAATGTTCGTGCAAGTTCTGGCAGTGACAAAAACTACTTCATTGGACGATTCATAACCGGGTTGCCTG ATTTTTCCAAGAAGAAAAGTGCTGAAAACAAGTGGTGCCTTCAGAAGGATGGACTGCAAACCCGCCAAGTTACCGATGCT TTGCGGGTATAATTGAATATATCCCTAATCTGCGTCTGGAATGCATCTGTCTATGTATGATGATGCCATCACTGTAATAC AATGTATGAAACTGACATTAAAATTAATATACAAATACTTGATAAAAAAGGAATTTATTTTTGAAAGCAAAGCATAAGTA ATAATAAAATGCTGAAATTATTGTGGTATTCTCACATATATCAGTATAAAGGTTAAGAAAAATGGACATGGGTCTGATAT GGATATACAAGAATATGGCTGGCTACTATCTTCAAGTATTTGTCCTGAATATGCAAAAGTTGTTCCCTCTTTTTAATCAT CATTAGGGCTGTTTTGCATGTAAGTCTAAAAGGAGTGCTTAAGCACCATATTTCACAAAGGAAATGCCAACTAAAAAGTA ACAAACTTGTAGTAATGGACAGTGGGGATACTGTGTTGTTTTACTAATAATTGTGTGGCGCATTATGCCACGGTCCATTT AGACTATTTTAGAGTGAGGGGGACATTAAAGACGATTCTATTTTAGTCATCTTGGCAATATGTAATTACTGGTTACTCGT GATAGATCATAAGTTTATTTCCTGAATAACTTTTATTACGGTATACAGGAGAAGTACAAGAACAAGCCGTGGCTCTTAGA GGACGAAACTGGTCAGTCCCAATACCAAGGTCACCTTGAAGGGGCACAGTCAGCTACATATTATCTGCTTATGATGGAAA GGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTAAGCTTGCTGAGTTAAAGAATAACGATTTGGTTTGTCTGCGAGA ATGGTCCTATGGTGTTAGCTTGTTTTTTCTTTCACTTGGGATTTTTTATTTTCTTCATCTGGTCTTTTCCTATGGTCAGA TGTGTGAGAACTGATCTGGTGTTCTCTTCAATCATCATCATCTTCTTCTTTTTCTTAAATTTTAGGTACAACTTTAACAA GGTTGCTCAATATAAACAATTGACATTAGAGGAAGCAGAAGAGAAAATGAAGAACAGAAAGAAACACGCGGACGGGTATG AAAGATGGATGATGAAGGCTGCAAATAATGGGGCTGCCGCATTTGGTGTGAAGGTTGAAGACAAGGAGATCAGTGTGTAC GGAGGGAAAGGCCGTAAAAAAACTAGTGAAGATGATGAAGGTCATGTCTCAGATATTGGAGAGGAGGATGAAGAAGAGGA GGCAGGAAGAAAGACTAGACTTGGACTTAATAAAGGAGGTGACGATGATGATGAAGAGGGTCCAAGGGGGGGAGACAGTG ATGTAGATGATGATGATGATATTGAGAAGGGTAAGTACTAGTCTTGTTGTCTTTTTTAGCTCTGAAGGTTATTATTTTAT TTCTAGTTTGGTTTAGGCAGTGATATCCTATTTGATTTGTATTTTGCCATGATTAATCACTATAGGAATTTACATCTACT GAGTTCTGACACACACCAGCTCATATAGTGGAAAGAGTAAATATTGACCCTACATCCTTACATAGATAGTCAAGGTTATA AGTTATTAATGGTCATAGACTTTATATTTTAATCTTTATCATTCATGGTTTGACCAAATGGTCAAATTTTGCTCTTCTCA CCCTCACATAGATAAGGCTCTCTCATCTTATATGTTCACTACACACACACACACACACACACACATAGAGAGAGAGAGAG CTGTGTGTGTGTGTCATGAATCAAGTGTCCCAAAAGTTGTTGGGTGAAGAGTGAAGATACATGAATGACTTCATATTACA TTTCTAATACCCCTCTTCATATAAGAGCCCTTTAGGCTTGAAGCATTGATAATGCACATATCCACCTATCTTGCGCTGAA ATTCAACTTTTTTATTAAAAGAATGAGGACAAGAAGAATCAAACTCTAAACCAATTGCTTTTAGAGACTTTGATGCCGTA CCATGAACCAACTATCTTAAAAGTTTAAATTGTTTGGTGAAGACACAATAATGAGTAGAGATATTGACTTCAAAGTCCTT TTAAAGGGTTGGTAATTCCCACACCTTAGCTAGCTTTTGAGGTAGAGTTAGGTTTGGTCTAAATTTTCCAGATGGAATCC GAGTCTATAAAAGACTCGTAATTTTACCACCCATGACGGGCCATCTGCAAAAGTTTCAAGAATTAGATTTAGTCATGATA GCTTGAGAAAAATTAGTGAAGTTAATTTGTCTCGTGACTTTTCTACGAAAGTAAATCAAAGTCAATCTCCGTTGAAGATA TTCCATGATAGGCGTGAGGGCAATCTAAATAATACTGGGTTTGCGATCTCGACGCCCTAAATGTCCAGCCTTGGGCATGG TGGGTGTGTGGTTAGGTTCTGCATAGACTAGAGATATGTGCAAAGATATTCCATGGTTAGGTTCCCCCTTGATTGCTTTA TTATTTTGGATGTGTATGCCTAGTGGAGGATATAGCTTAGAGTAAATTGCAAGTCAAATTGATTACTAAAATGAATCAAA TTTAGGCAGTTGAGACTTGAGACTTCATCTCATTTATGTTTTGAGGTATTTATTTTGGCCTTAGAGGCTTAGTTGCAGCT GGTAGCAAAACTGGATCACTTGCAGTTTTTTAGTACCTGTGTTGGTCTACCACTTGCTGATTTTATAGTGAGTAACTGAT GCGACTATTGACTTGATTGGTGATGGGTCTATATATTTGGTGTCCTACGCTAGAGTGACCCGTTCTATTCAAGTATTTAG TCTTAACTTCGCCAAAATTGAATTCATTTTTAGGCTTTTTTATAGTTTGTAATCTTGTTGGAAGCTTGAGGAGGAACACT TCATCAGGTTTATGCTTAATCTTTCTGCTGATTATACCTCTTCATAACTTCCAGGCGATGACTGGGAGCATGAAGATATT TTCACTGATGATGATGAAGCTGTTGGCAATAATCCCGAGGAAAGGGAAGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGA AATCAAGCAGGTTAGTTTCAAATTTCTCAAATACTGTTGACTAAGAAGTTTGATGTTCTTAGGACTTAGGATGATGTTTT TTTCCCAATATATTTCCATTTACTTGTTGTAGCTACTTCAAGGAATGTTATCGAGATATATTTTATATAGATTTAGTTAT AGATGTCAAATTGATTGTGATATAGTAGCTACTTCTTTTTGGGCATTTTTCTGTAACCATCTCTAGAGGCTATATATTCT TACTGCATGCGAAGAATCTTTGTATCAGAAGAAAGTGAACACAAAATCAGGAAATATTGTTCTTGGTGAAACAACTTTAA AATAATAATACACCCAACCATTTATAGAGGAATTTCATCCAGAAGGGTACCTTCATAGCGCAGCACATCCTATTTGTGAA TCCAGTATTAGAATGTCAGGACTTGACTAAACTAGATTTTTTTTTTCCTACAGGTTTTTACCGTCTTTTCATTTTCTGAG TTCCTTTGTTTCCTTTTCTATCATTGTCCATTCAGTCAATTTCTAATATCCTTTTTAGTTCTATCTATGTTCCTGTACTC TTTTTTTCATGTGTTCAATTACTTTGCAACCTAGCTTTAGAAACCAACCCTCAAAATAGGGATTATTGATGTATCATTGC TTGTTGTATTGATTTTTGGAATATAATATAAAAAATGACTGGTTGGAAAACTCCCAAATTTAGTTTTTTCTTAAGTTTGG ATTTATATAAACCTTGTTGAGTTTCCCGCCCTTTAATTTAGGATGAGGAGGAGGAGGAGGGTGAAGATAATGAGGAAGGG GGAGGTTTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTACTTGGACGTTCTAGTGGTCTAAATGAATCTGATGCTGAGGA TGATGACGATGATGAAGAGGTATGGTTTTTTTTTCTTATCTTTTATTACACTTATGCAATTTTTAGTTATTTTTTGGTAG ATGCACCTATAATTGCTGAAGTGTTCTTTGTGGCACTAATAATATGAAAAATAAATATAACTTTATGCAAACTTTAATCC CCTTTCTCTAAAAGGGGAATTATCTGATTTGAACAAATAGCTTGGATGGGTAAATTGGCCTTGAGAATTTTTATCCATTA ATGGCCTATTTGATTTATCTAGATGGATGATGAGGTTGGCGTTCCTCTTGTGAGTGCTTCAAAGCAGAAGGATGCACTTA AGGAAGAACCTGCTGACAATAGCCCTTTAAAACCTGGAGCTACTACTTCAAAGTCTTCAAAAGGGAAGAGAAAAATAAAT GAGGAAGCAAAAACATCTAATGGTGCACCACCAAAGAAGGTGAAAACAGAAAATGTATGTCATTTCTTTTCTGATCATCC TTTGCTTTGTATTTTTTAGAATTCGGCTTAGGCCTAACTTTACCCCAAAAGCTAGCTTAGGGGTGAGGATTGCTCTACCC TTTATAAGGACTATTTTGGTCACATCTCCAATCCATGTGAGACTTCAACACACTCCCTCACTCAGGGCTGGATATCTGGA GCGTGGAACTTGGAAGATTGAACATCTATGGATTGCCCATGTATAAGTAGTCTCCAATAAACAGATTTAGGATAAGCTCT AATGCCATCTTAGAATTTGGGTTAGGCCTAACTCTACCCTCAAAAGCTTGTTTAGGTGTGAGAGTTTCTCTATCCTTTAT AAGGAGGACTATTTTAGTCATACATATAGTCAATACAGGATTTCTCAACATAATAATGCCTTTAATTTTGATCTATGGGC AAAAGAGTTTTAATTGTCATCCAGCTATGTGATGCGAATGTGACATCATTAATAGTGTTTACCTGTAATAACAATTAACA TCTAAAAGTCAAATAATTTTTAATGATGTGGCAACACTTGGTTTAATGATAGTGTAAAAGAATTTTACACAAACTGCTTA GTTTTAAATAAAGTTTAACTGCTTTGGTAGGTTTTTAAAAAAATGCAGAAATGATTAAGCTTGTCTTAGCTTATATTATT TTGAGAAACTATTTTTCAGGACTGTTAAATGGGAAGGTGTTTTGAGAAGATTTTGACAAAATTTCCCCATATTTGGCTCT GAAAAACTTTACAGTTAATGTATCCAAAGGCAATATACAGCTTCTGCTTGTTGTATTGGAGCATTTCCAAAAAGCTCTTA TTGTCAGACTCAAATCACTTAATTTGAAAGCTAACCCAAAAGGCTTTCCTGTTAGTGTTAATGAAATTCTTCATTATTTC ATTGCCATTGAACCAGGAACCGAAATTATCTGTCAAAGATGAAAATGGGTCTGCAGTTAAAAGTAATGCTCCTCCAAAAG GTGTACCGCCTGCACCATCATCAAAAGCAGGGTCTTCCACCACTGCTTCTGGACCTGTGAGCGAGGAAGAAATCAGGGCT GTTTTAATGCAAAACACTCCAGTGACAACACAGGATCTTGTTGCTAAATTTAAAGCAAGACTAAGATCACCAGAGGTTAG CTCTATCTAAAAGTTTTGATCTACCCTTTATTCAGCTGCATTTGTTTGCTTAGTCATTCTTACGACCAATGTATGTATGA CAGCATCTCAATATGTTGTATCATCTTAATCAAGTTCTTCTTGTCAAATTTAGGTTTGAGGAAAAGAACTTGATTGTTAA ACGTCACTTAAATTCTGTAGACCAACATTTTATTCTATTTAGAATGAATTTGTGACTGGCTAATGTCAGAGTAAAAGGAT GTCATTTAACAATAGTTTATGGTAGTTTAGGGAATAAATGCCTTGTTCCATTTTCAACAGATGTGTAGCATGTAAGAATA AGAAATATGACCCCTTGTTCTTAGCTTGAGACCTCCTAAGATTTAAAGATAGTCTTTTGTCATACTCTTCCAAGGTTTAA TACATACACTCAGCTTCTTTACTATGTGCAGGATAAAAAGGCTTTTGCTGATATCCTGAAGAGAATCTCCAAGATACAGA AGACTACCAGTGGCGCCAGTTATGTTATTTTGAGAGATAGGTAA
CDS sequence (LotjaGi4g1v0008900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGGACCTGTTGCTGAAGCCTTCTTGTAGCGGTTGTGGATCAACCACCGATCTCTATGGAAGCAATTGCAAGCA CATGACTCTCTGCTTGACCTGCGGCAAAACCATGGCGGAGAAGAAAGCCAAATGCATTGATTGTGGCGCAACCCTCACTC GCTTGATTAGGGAATACAATGTTCGTGCAAGTTCTGGCAGTGACAAAAACTACTTCATTGGACGATTCATAACCGGGTTG CCTGATTTTTCCAAGAAGAAAAGTGCTGAAAACAAGTGGTGCCTTCAGAAGGATGGACTGCAAACCCGCCAAGTTACCGA TGCTTTGCGGGAGAAGTACAAGAACAAGCCGTGGCTCTTAGAGGACGAAACTGGTCAGTCCCAATACCAAGGTCACCTTG AAGGGGCACAGTCAGCTACATATTATCTGCTTATGATGGAAAGGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTAC AACTTTAACAAGGTTGCTCAATATAAACAATTGACATTAGAGGAAGCAGAAGAGAAAATGAAGAACAGAAAGAAACACGC GGACGGGTATGAAAGATGGATGATGAAGGCTGCAAATAATGGGGCTGCCGCATTTGGTGTGAAGGTTGAAGACAAGGAGA TCAGTGTGTACGGAGGGAAAGGCCGTAAAAAAACTAGTGAAGATGATGAAGGTCATGTCTCAGATATTGGAGAGGAGGAT GAAGAAGAGGAGGCAGGAAGAAAGACTAGACTTGGACTTAATAAAGGAGGTGACGATGATGATGAAGAGGGTCCAAGGGG GGGAGACAGTGATGTAGATGATGATGATGATATTGAGAAGGGCGATGACTGGGAGCATGAAGATATTTTCACTGATGATG ATGAAGCTGTTGGCAATAATCCCGAGGAAAGGGAAGATTTGGCTCCTGAAGTTCCTGCTCCTCCTGAAATCAAGCAGGAT GAGGAGGAGGAGGAGGGTGAAGATAATGAGGAAGGGGGAGGTTTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTACTTGG ACGTTCTAGTGGTCTAAATGAATCTGATGCTGAGGATGATGACGATGATGAAGAGATGGATGATGAGGTTGGCGTTCCTC TTGTGAGTGCTTCAAAGCAGAAGGATGCACTTAAGGAAGAACCTGCTGACAATAGCCCTTTAAAACCTGGAGCTACTACT TCAAAGTCTTCAAAAGGGAAGAGAAAAATAAATGAGGAAGCAAAAACATCTAATGGTGCACCACCAAAGAAGGAACCGAA ATTATCTGTCAAAGATGAAAATGGGTCTGCAGTTAAAAGTAATGCTCCTCCAAAAGGTGTACCGCCTGCACCATCATCAA AAGCAGGGTCTTCCACCACTGCTTCTGGACCTGTGAGCGAGGAAGAAATCAGGGCTGTTTTAATGCAAAACACTCCAGTG ACAACACAGGATCTTGTTGCTAAATTTAAAGCAAGACTAAGATCACCAGAGGATAAAAAGGCTTTTGCTGATATCCTGAA GAGAATCTCCAAGATACAGAAGACTACCAGTGGCGCCAGTTATGTTATTTTGAGAGATAGGTAA
Protein sequence (LotjaGi4g1v0008900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMDLLLKPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAEKKAKCIDCGATLTRLIREYNVRASSGSDKNYFIGRFITGL PDFSKKKSAENKWCLQKDGLQTRQVTDALREKYKNKPWLLEDETGQSQYQGHLEGAQSATYYLLMMERKEFVAIPAGSWY NFNKVAQYKQLTLEEAEEKMKNRKKHADGYERWMMKAANNGAAAFGVKVEDKEISVYGGKGRKKTSEDDEGHVSDIGEED EEEEAGRKTRLGLNKGGDDDDEEGPRGGDSDVDDDDDIEKGDDWEHEDIFTDDDEAVGNNPEEREDLAPEVPAPPEIKQD EEEEEGEDNEEGGGLSKSGKELKKLLGRSSGLNESDAEDDDDDEEMDDEVGVPLVSASKQKDALKEEPADNSPLKPGATT SKSSKGKRKINEEAKTSNGAPPKKEPKLSVKDENGSAVKSNAPPKGVPPAPSSKAGSSTTASGPVSEEEIRAVLMQNTPV TTQDLVAKFKARLRSPEDKKAFADILKRISKIQKTTSGASYVILRDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 525 | 525 | 1.7E-214 | ||
| Pfam | 48 | 525 | 478 | 4.3E-133 | ||
| SUPERFAMILY | 53 | 183 | 131 | 3.14E-32 | ||
| MobiDBLite | 218 | 469 | 252 | - | – | |
| MobiDBLite | 243 | 262 | 20 | - | – | |
| MobiDBLite | 263 | 300 | 38 | - | – | |
| MobiDBLite | 355 | 370 | 16 | - | – | |
| MobiDBLite | 405 | 432 | 28 | - | – | |
| Gene3D | 448 | 526 | 79 | 3.6E-9 | ||
| SUPERFAMILY | 458 | 526 | 69 | 5.71E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Positive regulation of transcription elongation from RNA polymerase II promoter | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
Expression pattern of LotjaGi4g1v0008900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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