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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0017200 |
| Transcript ID | LotjaGi4g1v0017200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 72 like; TAIR: AT2G36740.1 DNA binding protein SWC2; Swiss-Prot: sp|F4IP06|SWC2_ARATH SWR1 complex subunit 2; TrEMBL-Plants: tr|A0A1J7IHB7|A0A1J7IHB7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0017200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2197385..2204012) extracted from Lotus japonicus Gifu genome v1.2.
TCATGTGCTAAAAAGCTCATCTTATCTTATGAACTATTTGATCATCATATCATATGAATAAGAAAGGCTTCCGGTAATAA TAATATCAATAATATAATTATGAAATAAACAAGAAAGATAAAAGAATGAGTTTTATACATTTTACCTTAATTTCATAATT TGTCATTTTTTATAATAATAAATATTTATAATTTGCAATCAATCAATTTCAATGAGCTTCTTTTGATGGAGAAGTCCGGC GAAGGTGAGAGGGCGGCGCCGGTCATTCTGGACCGCAAATCGCGAGCCACCAGAGGCAAACGCCTCACCAAACTCCTCGA CGACGAACTCGAACAAGACGAAGTGTTCTGGAACCAGGAAGCTCTCAAAGACGAAGCCGAAGATGACAACTACCAAGAGG AGCAAGAAATCGCCGACGAATTCGACTCCGATTTCGACGAAGACGAGCCTGATCTCGATGACGAACAACCTGAAAACGAC GCCGTCGAGAGACCTAAGAAGAAGAAACTGTTTATCCCAGGGAAGACGCTTGCCACCAAGAAGAAGCAGAAGCAGAAGAA GACGAAGATTCTATCGAAATTGGAAACCTCTCCTTCTCCTAAGGATGGTGATGATGACGATAAAACTGTTTCCGACGAGC AGCAACAGCATCACGACGATGCCGCCGCCGCCGAGAGAACGATTAGGAAGTCCACCAGAACCTCCGTCATCGTTCGCCAA GCCGAAAGAGAAGCCATAAAGGCAGCATTACAAGCCACCATGAAGGTAACCACCACCACCATCACTCTACTCTATCAGTG AAGCTTGATTTATGTGATTAGGTCTGAAAATGGTTGATTTCTGTAATTTTGTTTTGGCTCAGCCAGTGAAAAGGAAAAAA GAAGGTGAAGAGAAGAGAATGAGTCAAGAGGAGATGCTTCTGGAAGCTGCTCAAACAGGTTAATTAACATGATAATTGAT GGCTTTGTTTGTTTGTTTGTTTGTTTGCTGGTTTGAGCTTCAATTATGAATTTGACTCTGCAGAGATTATGAACTTGCGG AATCTGGAGCGCGTTTTGGCAAGAGAGGAAGAAGTTAAGAGGAGAGCAATTGTGCATAAAACTGTCTATGAGGGTCCGCA GATACGTTACATTTCGAAAGATGGTGAGGTTTTTGAATGTGTGAAGATAATGTGCGCGTTTGATTTGGTGATAGTGTGAT GTTGTACTTGTTTGTTGTCATTTTACATCTAGCTGTCTGTTAATTTTTCAGGTTGTTCGTATTTGGAGTTTACTAATGGG GCATCATTTCACTCAAAAATCAACACAGCTTCTGTAAAATGTGCGTCCCTCCTATGCTAAAAGCTTAAATGAGATTGACA ATTTGGTTCATTTTAGGTTGAAGAATACTATATTATATATTCTGTTTCTTATGCATGAATTTTACAAGATTTGTTATTAA ATTCCCAGAGAGATTGCTATAGCATTGCATTTCACTCTACATATCTATGGCCTATTAATAGTTAACTGTTTCCTGATTAA ATTCAATTTATTTATCAATTACCACATCTGTTCTGCACCAGGGTTTGAATTCGAACCCATACCTTTTGTTCTTGTAATAG ACAATATTACTGGACATATTCTTGAATCAAAATGAAGGCCTTGGTGTATGCTTTTTACTAATGATATTATTTTGGTGGGT TAGACTAATGACATGACAGTGAATGCTTAGTTGGAGTTGCACAATGATGTTTTTGAGACCAAGGGATTTTAATTGAGGAG CTCAAAGACAAAATATAAAGAATTTAATTTCAGTTAGGATAGGAGAGGTGATGATGGTATACTAAGTATTGAAGAAGTAC TGGATTTGTGTGATTTAGATAATTAGGAACTATCTTACAAAGGACAGAAGGATTGATAATGATGCCACACACAATATCCG AACATATGGGAGAAGTAGAAAAATGCTTTAGGTGTTTTTATGACCTAAAGTGCCTTAAACTTAAAAAGAAAGCTTTACCA AATCATAGTTAGACCCACAATTCTGTATATATCAGAACAATGTTAAGTAAACTGCAATCATGAGCTGAAGGTGAAGGTTG CAGAAATGAGAATGAAACATTGGATGAGTTGGAATACTAAGATTGATAGGATTAAGAATGAATTCATCAGGGGGAAAGTT GGATTGTGGATAGTTAGCAATTGTTTGAGGATGTTTGGACGTGGTAGAGCAGATGACCTCCACGAAGATGGGTGGCGCTA CCAAAGCAGCATGATTAGACTCGCTTGAGAACTGTTAAGAAGAATTTAAGGTACCCAGCGTTGTGAACATATAATACATG ATCGCACTCAGTAGCGAGCTTGATTCCATGTAGGTGACTCCACTAAGGAGGAAAAGAGGTTTGGCTATTGTATTAATTAC AACATGCCAAGAGTGCCCTGATTCCATAGAGATAAGGGAAATCTGAGAATATTGTCTAGAACTCAGATATTTGTGTGGTT TTACTTTCTTTAGAATCTCCAGAACAAAGAACTAAAGGATGATCTGAAATAAACACAATTAAATTAATTAAAACAAAAAG ATAATGAATTATTGCCTATGCTTTTCTCATTGGTTTGTTTCAACCTTGGTGTCACATGAAGAGAAAACTTCAATGATATG TGCATTTTAGCCTTTTGTTCTGATAATCAAGCTAGTCATTGCTAAGTACACTATTTCGCAAGTGTTCTTTTACTTATGTG ATTTTTATATTTCTTTTCAGATCCAGAAAAACCTGTTTGCGTGATTACTGGTTTGCCTGCCAAGTAAGAGCCTCATTCAC CAATATGTGGTTACTACTTTATTTTTTCCATCTTAGTTGGGATAAGAGGCAAAGTGTGCACTTTAGAACACATTTATTCC TCAAAATATGTCTACCTAGACGACTTGGTATGGTAAATTGCTGATTTTGAAGTCATTTAAACTTTGATATTTATAGGGAA ACACCAACAGAACCTTGCTTTAGAATTCGTATTCTGTAGTTGGGTTAGATGGTACAAAATGCATTGCAAAGCAGGAGTCT AGCATTAACAGTGGGTTTGTGGCAAATTGAGGAAAAAAAAAAGGCATTCACAGTGCATGCAAACATTATTTTTCATTTAC TTTGTTTTCCTTGCAAAAATCACGGGTGGGCCATATAAAGTCAATGTTAAGCTAGACGATTAATATGAGGGTTTTTATGT TCTTCTGCCTATGGGTTCTTTAAGGGACCTTCTGTTCCTGATATGTAGTGAAACACTGGACAACTAGATTGCTATTTTGT ATTACCTGTTCACCCCCCTCTTTCTTTAGATTTCTCTACTTAGGAAAATATCTTATCCCTCTCCTTGATTATATTGCTTC TGTTTTCTCTTCAAGAAGTAACAAGATGCCTTATTGAACTTCAAAATAAGATATCAGTTGGCAGAATTAATCCAGGGTTA GACCACCAACCTATTATATTACAGTCTGATAAGAACCTTGGGAGAACCACACCACAAAAGCTAGCTTTTGTGGTGTGGTT CTCCCAAGGTTCTTATCAATGGTATCAGAGCCTTCCACCATGTCTCTGAGCTGCAAACGAGCGGCGCGGGTGGTGACGCC GGCATTGCAGTGTTCGCCCGGGACTAGTCGTGGGGCTAGTGCACAGCCAGCCCGCGTGGGCGCCGGGGCTGCGGAGCGTG GTGGGATGTTAGGACCCCATTGCAAGGTATGAGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGGTTTATA AGGTCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCACAGTCCCTTCTGAAT TTCTGGTCGACTTAGTCCTGCCACTGCCAAGACGGCATTATATTACAGTCCCTTCTGATTATTTTCTTAATTTTTTTAAA TTGCATCATTATCAACATGTATTTTAAATATTGCTGTGGTTGTCTCTATTTATCATTGATCAGCTTGAAAATTTTCCTTA GTTGAATTCCCACTATACCTCATATATTGTTAAGGAATTCTCTCTGGACTAATGTAGGTACCGTGATCCAAAAACTGGAC TGCCATACGCTACAAAAGAAGCTTTTAAAATAATTCGACAACGGTATGACTATTGTTTATTCCAAGTGATTTTCTCTAAA TGTATATACTGTATTTCTGTATAGTATTTGTCTTATTTTCCCCTTTCAAGCATTATTTCTGTATAGTATTCCTTTAATAG GATTATAGTCACACACACAAAAAAAGCGAACAATTTTTTTGTGGCTAATCTGTTGTTTCTGTTTTCCTTGGATGATGTGG TCTAATATTCCCGAGAATGCCGACCAGTTCTACCAATTGTCAATTAGTAATATCAAATTTTTGTTGATCTGAAAGTAGAA TACATAAGCATGTAAGTCCAAACCATTGAGCGTATATGTTATCTTAAGAGGAAATGATATGATTGACAAATTGATGCTCA ACGATTTGGAATCTTATCTTTATTTATTGTTTTTCTTTTCGTTAAAGTCCATGACACATACTGTGGTTGGAAAGCTAATG GTGGCTGTTAGTTATAAAAACCACTGATGTGCCTTCACACAATTGCTTTACCTTTTGGGAGAGATGTTTTATGACATATT ATTAGAGTTCTTATGACCATGTGGTTTAGAATTCGATCCTTGTTCTCATCATTCTTAAAAAATTCAACAAGTTAACTTTC AACACATTGTAAGGTGGGCTTGGACATTGTCTATGCATCAAGTTCAAAGTAGTTCTGTTTCTGCATGAGATGTGAGGGGG GGGGGGGTGTTAAATATAAAAATCATTCATGTGCCTAGCTTAAGCTTTTGTGTGAGTTGGTTTATGAAAGTAGAGTTTGC CTTTATTATAGAAATTTCTTGTTTATTAGCTAACTATATGATGAGCTGACAAATAACATCTTTTATATATTTATTTTGGT ACAAGCTTTGAGTATCTTGCTGAGTTCCATGTTGATTTTAACCTATATTAATGGGAATTTTTGCAGCTTTCTGGATGAAA ATGCTAACTCTAGAGAGAACATGAGCATAGGAGGCTTATATGATTCAGTTTCTGGTTGCGGGTTTTCAAAAAAGCGGAAG AGATCAATGACACCAGATAAAAACAAACATTCATATGATCGGACCTTCGCTCGCTTTCGAAGAATTCCTGATTCTGACGA TGAAGATTCTGACTAGCTGCTTTGATGGTTGGTATTTTTTTATGTGTTTTATTGTACACTCTTTTGTAACATTGATGCAA GATTTTAATTTCAGTGCCTGATCATGAAAGAAGTCATGGCTGTGCTACGTCATGATCTGGACCTCAGGTTGGGATGTTAA TAGAGAGCGAGTAACATGAGGCTAGTTTCAGTGCTTGCAAAGGCATGTTGGGTCTCCTTCGACCTTCGGTATGTATTTTA AAATATGACCTTGCCTTGTAGGGGAAAAAAGGAATAAGAAGAAGAAAATTGTCCTCACTGCAGAAGGATACATGATATGC CAAAAGTTCCTTTTACAATTTGTCATTTACATAGTTTGCTTGGGATAATAGATCTCTTGTGGGGGTTGTAAGTTTTCAGA CCTTGCACTGAAGTGTAACTGTGTATAGATTGAAACAAGTAGTAAGGAGAGAAGAGTGATTAGAATTTAGTTTTCAGGCT AAGCTTCAAAGCTTGGATATTATTCAACGATGATTGGAATGGAATGAGATGAGATTAGGATGGAATAAGGGGGAAAAATT ATCATACTTTTGTATGGATAATCTATGAAATGACTGAGATGAGACGAGACGAGATGGGATTGAATGAAATGGAAAAAAAG GGAAGAAAAAACAGTAGTTTACTTGTGTAATGATGAAACCAAAGAAAGTTTTCATTCCATTGTTTGGCGAATGCATTATT AATTAGAGTAATTAATAAGTTGGTTCCATTCCATATCCCTCAGAATTAATAAAAGAGTTTAGATTCATTCACACTCATCT TTCTCTTCCATCTCTGATGGCTTGGAATATATTTTGGAGTGTAAAGTGAGTAGTTCCTAAAAATTAATTTCCCTGTTTTA AAATATATACCGTTATGTATTTCCATCGATGTCGTTAAACTATATCTATGCGTTTAAGAGAAAACTGAGTCACTTATCCA ACTTGAACTTTTTAATTGATGTGGCACAGTGAGACTCACTTTTAAACACATGGATGACACATGGTTCAATTTAGGGTTCA CAAAATTTCGTAAAAAAAACCTTCATTATGCTCCTTCTCTTAGGCTCGTATTCTTCTCTCGCTCATCTGCTCCTTCTTCT CCACTATTTTCTTCAACCATCAGAGACAAGTTCTACAACAAAAATGATGAGAAGATATGGAAGAGAAGCAAGATCAGCAA CCTGATGAGACGTAGCAGGATCAAAGAGCTCAACAACAACAAAACAGGGGAGGGGGGACAATTGCGAAGTTTTATGCTAA CAACCGATCACACGATGCCACGTGGGAGGAACACCTGCTTTTATTAAAAAAATTAATTTTAATAAAAATAAAAATATATT TTGTGATTTGTCAGAATTCAATTGATTAATTGTCTAAATCTTACACCAATGGACCAAACCCTTAAACA
CDS sequence (LotjaGi4g1v0017200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGTCCGGCGAAGGTGAGAGGGCGGCGCCGGTCATTCTGGACCGCAAATCGCGAGCCACCAGAGGCAAACGCCT CACCAAACTCCTCGACGACGAACTCGAACAAGACGAAGTGTTCTGGAACCAGGAAGCTCTCAAAGACGAAGCCGAAGATG ACAACTACCAAGAGGAGCAAGAAATCGCCGACGAATTCGACTCCGATTTCGACGAAGACGAGCCTGATCTCGATGACGAA CAACCTGAAAACGACGCCGTCGAGAGACCTAAGAAGAAGAAACTGTTTATCCCAGGGAAGACGCTTGCCACCAAGAAGAA GCAGAAGCAGAAGAAGACGAAGATTCTATCGAAATTGGAAACCTCTCCTTCTCCTAAGGATGGTGATGATGACGATAAAA CTGTTTCCGACGAGCAGCAACAGCATCACGACGATGCCGCCGCCGCCGAGAGAACGATTAGGAAGTCCACCAGAACCTCC GTCATCGTTCGCCAAGCCGAAAGAGAAGCCATAAAGGCAGCATTACAAGCCACCATGAAGCCAGTGAAAAGGAAAAAAGA AGGTGAAGAGAAGAGAATGAGTCAAGAGGAGATGCTTCTGGAAGCTGCTCAAACAGAGATTATGAACTTGCGGAATCTGG AGCGCGTTTTGGCAAGAGAGGAAGAAGTTAAGAGGAGAGCAATTGTGCATAAAACTGTCTATGAGGGTCCGCAGATACGT TACATTTCGAAAGATGGTTGTTCGTATTTGGAGTTTACTAATGGGGCATCATTTCACTCAAAAATCAACACAGCTTCTGT AAAATATCCAGAAAAACCTGTTTGCGTGATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAAACTGGACTGCCATACG CTACAAAAGAAGCTTTTAAAATAATTCGACAACGCTTTCTGGATGAAAATGCTAACTCTAGAGAGAACATGAGCATAGGA GGCTTATATGATTCAGTTTCTGGTTGCGGGTTTTCAAAAAAGCGGAAGAGATCAATGACACCAGATAAAAACAAACATTC ATATGATCGGACCTTCGCTCGCTTTCGAAGAATTCCTGATTCTGACGATGAAGATTCTGACTAG
Protein sequence (LotjaGi4g1v0017200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKSGEGERAAPVILDRKSRATRGKRLTKLLDDELEQDEVFWNQEALKDEAEDDNYQEEQEIADEFDSDFDEDEPDLDDE QPENDAVERPKKKKLFIPGKTLATKKKQKQKKTKILSKLETSPSPKDGDDDDKTVSDEQQQHHDDAAAAERTIRKSTRTS VIVRQAEREAIKAALQATMKPVKRKKEGEEKRMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVYEGPQIR YISKDGCSYLEFTNGASFHSKINTASVKYPEKPVCVITGLPAKYRDPKTGLPYATKEAFKIIRQRFLDENANSRENMSIG GLYDSVSGCGFSKKRKRSMTPDKNKHSYDRTFARFRRIPDSDDEDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 349 | 348 | 9.4E-91 | ||
| Pfam | 17 | 243 | 227 | 3.4E-34 | ||
| MobiDBLite | 45 | 153 | 109 | - | – | |
| MobiDBLite | 51 | 83 | 33 | - | – | |
| MobiDBLite | 96 | 113 | 18 | - | – | |
| MobiDBLite | 123 | 152 | 30 | - | – | |
| Coils | 186 | 220 | 35 | - | – | |
| SMART | 273 | 302 | 30 | 5.3E-16 | ||
| Pfam | 274 | 302 | 29 | 2.1E-17 | ||
| MobiDBLite | 333 | 367 | 35 | - | – | |
| MobiDBLite | 342 | 367 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Histone exchange | The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits. |
Expression pattern of LotjaGi4g1v0017200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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