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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0017600 |
| Transcript ID | LotjaGi4g1v0017600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150; TrEMBL-Plants: tr|K7L5N5|K7L5N5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0017600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2234219..2239959) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTACCGCAAAATTAGGAGTTTACTTTCTAGCATGTCCACAATAGGCTTATGGGTAGCTAGAATAGGGCTCAGAGAAA GATAAGAGTTGTGAACTTGGAGCACTCCCCCTAAGGAGATTCTCTCATTGTTGGGAAACAACTAGTTTTTTTCTTTCTGT TGTTTCTGTTTGTGTTGTTTTTTCTTTTCTCAATCCATTAACAAAAAAATTACTCTTTATGTCACAATATTAAACAATGA TTTTTTAGAACCGGGATAAAGAAGTAGCTTAGTTAAAAAATAAAATTGAAAAGGGTATAATTGAGTATGATAATGGTGGT AACCCTAACAACATGCACTGGCTGTTATTCATTCTTCTTCTTCTTCTTCAGCTCCATTGATCGGCTACAGGAACAGAAGC AATGTTGGTGGAACACTTGATTCTCCGCCATCACCATTCCCCACCACAACCCTCAATATGAAGAAGAATCAATATCCAAT TGAAGTTGTTTTGCTCAAACATGTTGCATTCTCTGCGCAACATCGGTAGCCGAGTAAGCTTCTTCTACTCCTCATCTCGT CGATACCCATTTCCCCATTTCCTCACCCTTCCATCTTCCCCCTATAAAGATTCGATTTTTGCATCCCCCATGATTTGGGT CACAAGCTTCATGTGTGTTATCAGATACCCTTTTGCCTCAAAACCTTCTTTTGACGACATTGTCTCTGAGACAGTGCGTA GTTTCTTGCAAAATGATGATGCACACCACATGTTTGATTCAGTGCTTGCACCTATTTGGGTGTCTAAGGTTTTGGTGAAG CTGAAAGAGGACCCAAAATCAGCCTTGAAGTTCTTCAAAATGGCAGGGGAACGAGTCGGGTTTCGCCACTCCTCGGAGTC TTATTGTATCCTTGCTCACATTTTGTTTTGTGGGATGTTTTATGTTGATGCAAAGAATGTCATTAAGGAGTGGATTTTGT CTAGGAGGGAATTTCCGGGTTGTGATTGGTTTGATATGTTGTGGTTGAACAGGAATGTTTGTCAGGCAGGGCCTGGTGTG TTTGATTGTTTGTTTGGTGTTTTGGTGGAGCTGGGGATGCTTGAGGAAGCTAGTCAGTGCTTTTGGAAGATGAAGAAGTT CAGGGTTTTGCCAAAAGTGAGGTCCTGTAATGAGCTTCTTCACAGGCTTTCAGAATCGGGCAAAGGGAATTTGTCGTTGA GTTTTTTCAAGGACATGGTTCGGGCTGGCCTTTCGCCCTCAGTTTTTACATATAATATAGTGATAGGCTATTTGGCCAAA GAAGGGGACTTAGGAACTGCTAAGAGATTGTTTGAACAGATGAAACAGACAGGTGTGATGCCAGATGTAGTTACTTATAA TTCTCTCATTGATGGGTATGGGAAGCTAGGATTATTGACCGAAGCGGTTATTGTTTTTGAGGAAATGAAAAATGCAGGAT GTGAGCCAGATGTTATAACATTCAATTCACTAATTAATTGCTTCTGTAAATTTGAAAGAATTCCTCAAGCTTTTCAGTAT ATGCGTGAGATGAAGGAAAGAGGGCTGAGACCAAATGTTGTAACTTATAGTACACTGATTGATGCCTTTTGCAAGGCAGG CATGATGCTTGAAGCACTTAAATTTTTTGTTGATATGATACGTGTAGGTCTTCAACCCAATGAGTTTACATATACATCTC TGATTGATGCAAATTGTAAAATAGGCGATCTGAATGAAGCATTGGAACTGGCTAGTGATATGTTGCGGGCTGGATTAAAA TTAAACATTGTCACCTATACTGCATTATTGGATGGTCTTTGTGAAGATGGTAGAATGAAAGAAGCAGAAGAATTATTTAG GGCATTGTCAGAAGTCGAGGTGGCTCCTAATGTGCAAATTTATACTTCTCTTATTCATGGATATATCAAGGCTAAGATGG TGGAGAGTGCCATGAATATTATAGAGGAAATGAATAAGAAAAACTTGAAACCAGATCTGTTGCTGTATGGAACCAAAATT TGGGGTCTTTGTAGCCAAAATAGAATAGAAGAATCTGAGGCTGTAATACATGAGATGGTGGATTGTGGTCTGACTGCAAA TAGCTATATATACACAACCCTTATGGGTGCATATTTTAAGGTTGGGAAAACCGTGGAGGCTGTTAATCTATTACAAGAGA TGCAGGAAAAGGGTATTGAGACAACAGTTGTAACTTATGGTGTACTAATTGATGGTTTATGCAGAAAAGGTCTAGTTCAA CAGGCTTTTAGTTATTTTGACCACATGACTAAAATTGGTTTGCAACCTAACATTATGATTTTTACGGCTCTGATTGATGG CTTTTATAAAAATGATTGTGTTGAAGCAGCTGATAAGCTGTTCAATGAGATGCTGGATAGGGGAATCAGTCCAGATAAAT TAGTTTATACTGCTTTGATTGATGGGAACCTGAAGCACGGAAATCCTGAACAAGCTTTGAGTTTGCGAAATAGAATGGTT GAAATGGGTATGGAGCTTGACCTGAAAGCTTATACTTCATTGATTTGGGGTTTTTCACACTGTGGTCAAGTACAACAGGC AAAGTCATTTCTGGATGAGATGCTTGGGAAGGGCATCATTCCTGATCAGGTTCTCTGTATTTGTCTTCTGAGAAAATATT ATGAGCTTGGAGACATCAGCGAAGCTCAGGAACTTCATAATGATATGATGAGGAGGGGCCTTGTTTCTGGGACAATGGAC ATAACAATTCCCTCTGTACGCACTTGAGAGGGTTTATTTTAGTGGCCCACAATCTACATTATTTCATTTTTTTCTGAAGT TCAAAAAACTTCATTGAAATGAATTTGATGCATCATTATATAATGGCAACTGAACTGACTATCCTAAATGGTGCGTTCCC ATTCTCAAAACACTTGTTTTCACATGATGTTAATCCGCAGTTCTGGGACTAGCATTTCAGTATTCATGCTCTCATGTGAT CATCAAGACAGCCATAACATGCCACTTTCCTGGTTTGAGAAAGTTTTTTGATGCTTCTAGTGACTGATTGTTAATATTCT AACTAGAAAGCTCATGATTATAGGTACCGAATAGTCGAATACTGTTCTTGTATACAATTAGATTTCCTTTTCTTTAGAAA TTATGTATTTGATGCAACTTGTCTTATTCCTTTTGTTACAGAGCATTTGCTTCTTTAATCTCGTTACATAATTGAACAAG CATACTGCTTCCCAATCAGGAGCTTATTCTCACATCACTGCAAATCCTTGTTACGGAAGATGCAGAGTTGTTCAGCCGTG GTGGATGACCTTGTTACCACTTAGGCGTACAAGGTTATGATATTTTTTTGGCATTGTATTAATTAGTTATAATAATGTGA ACACATTCAACCACAGTTGTGATTTTAAGTCTGTTATAGTTCTTGTACAGCAACTTTCTTTATGCTTTATGAGTAAATGG CATTTCTTGTGAAATGTTTCCTGGTTTTGTTGGAGAAGCATCTCTTTTCTTCTTTATATCAATTTCACAATGTAATCACT TGCTATTTAACTTTCTACAATTTGTTCATAATGTTCCAAAGCAATTTTTATTTTGACATTCGTCAGCATTGTCATCTCTT CTGAATATATATTGTGGTGTTAGTGGCTACTTCTGTCTTATATCATGAAAGGGATTACTCCCTATCCCCAAGAGTCTGAA AAAATAATTTCACCATACAAAGAGATAAGAGTTTGATGTGAGTTATTCTGTTACTAGTTTGTTAGGTAAGTCTGTCTAAG AGTTCTTTTTTTCCATATTCCTGCTCAACACTGGACAACCCATTCCACTTGATTCTCTTTCTGTTAAAATTCAGTTTATG CCTTTTCAATCTGAGTTAATTCCTGAAATGAGCCATCAGAATATTAAGGTTAAGTTCACAAAATCTACTTTTGATTGTCA CAGATCGCAGGTTTTAATTCTGCAATTCTCGCTCCTTGTTATACTGTCTTCCCTATTCTGTCTTAGGCCTTCTAGAACTT TTGGAGTTCCAAATTATTCCATTCGGAACCTTCTGTTTCTTTCAAGTTGATAAGGGGTGGGTTGGTGTGAAAGATTTCAT CTTCACATGTACTGTACTGCATAACATTTTTTAACTTCTTCTGCAATGTGTAATCATCTCATGCTGATGCGAAATGTAAA CCAACTGCTTGTTTATGCCAAGAGGCTGATTATCTATGGTACTTTATTACCAGGTTGCTAACTTGCTTAGAAGCTGAGGA GCTGTATGCACCTTACAATGGTCTCGCGTGTTTCGCCTCATCCAAGCTCCAGCTAGATGGCATGGATAAAGGTAAGGCCA TTATGTGGGGTCCAAAGGTTCATAGGTAGAAATTTGTGGTGGCTCTCGTCCAAATTTTGTATCTAACACAGACACATGCA GTCTAAAGATGAACTGAAATCCTCTGTCCTATTTGGTGTCCTCTTCCCGTTTCCACCTATTAAATTATGCCATGTAATTT ATAAACCACACATATAAGGTTATAATTGTCATACTCATGCCTACATGACGATTTTTATTGGTGAGACAGTGAATGAGACA GCAAATGGGGACTGAGGTCATCCTCTAAAGACCATGAGTCGTGTTTTTCTAGATATCAGAAAGATTTGGGACAGAAGAGC AGTGTTATCATATATCTGCCATGGCGGAATCTCATGGCCGGTTTTTGCTCTCCGCCATGACTGATATCTCGCCATAATCC ACCATCTGCCATCATTATTTGCCAAATATGGCGTGTTTTTGGGCTCTCCGCCATGGTCCGCAATCTGACATTAACAACAT TGCAAAAGAGTTTATTTCAATTCAAGGTGGAACATCTCACAAGCTTCACAGATGATGACTGCTGTACTCACAAGTATCTT ACTGTTTGTTAAAACATCACCCGCATTCTCAGTTGTTTTGACTAGTCTTTTACGTCACAAAGAAAGAATAACTGAACTGG AGAACGTGCCAAAACAATGACTCCAAAAAAACTGCAAATTATTGGACTTATTGGCATGCAGTGTTTTCACTCCCATCATA CTTGGTATGTATGTCAGTATGTCAGTATCATGCATGACAAAACTATCATGAATCTCGAGCCCATGCTAACAGATATGGAT TCATTTTAAATGCTACAATGGACGTGCAAGGAATGGGGGTGCACATTGAGTAGATTAGATTTTCCTAGCAGACAGAAATT CTGTATTCAATTTCTACCAACAATTTTCCCTTTGATAAACACTTCCATGTTCAGACTTCAGAGCTCACATGATGTGAGTG ATGGAATCCAAAGAAAATTGGACCACAGGAAATTATTGTTAGTGGTGCAATCTAGTGAAAAAGTGGAAGAGGGTAGTGAG AGAAGGAAATGCTTGTGATTTGTACCGAGTTTAGATGAGGTTGTTTGTTTTGTGGAAACAGCATAAAGGTTGAGAAAGCC ATGCAACTTTTAAGAGCAAATTGTACATATTAGTTTGTTGGCTCCATTTTTCTCCCCTTGCATGCATTGTTTAGTTTCCC TGAGGATGAAGATTATTACTTGGTGTTTAAATAGGAAATATATGCAGAATGTATTTAAGTGTGGATATGTAGAAGCATAT GCATATCAGAGAACAATCAATTTTATAATTTGTTTGTTACTTGTTAGGATGACTTTAAAGGAATGGGGATGGAAGATAAA TTAACTATTTTCTTGTCATGCTAAGTGCGATCAAGAATTCAACTTCATGTGTATTTATGAG
CDS sequence (LotjaGi4g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCATTCTCTGCGCAACATCGGTAGCCGAGTAAGCTTCTTCTACTCCTCATCTCGTCGATACCCATTTCCCCATTT CCTCACCCTTCCATCTTCCCCCTATAAAGATTCGATTTTTGCATCCCCCATGATTTGGGTCACAAGCTTCATGTGTGTTA TCAGATACCCTTTTGCCTCAAAACCTTCTTTTGACGACATTGTCTCTGAGACAGTGCGTAGTTTCTTGCAAAATGATGAT GCACACCACATGTTTGATTCAGTGCTTGCACCTATTTGGGTGTCTAAGGTTTTGGTGAAGCTGAAAGAGGACCCAAAATC AGCCTTGAAGTTCTTCAAAATGGCAGGGGAACGAGTCGGGTTTCGCCACTCCTCGGAGTCTTATTGTATCCTTGCTCACA TTTTGTTTTGTGGGATGTTTTATGTTGATGCAAAGAATGTCATTAAGGAGTGGATTTTGTCTAGGAGGGAATTTCCGGGT TGTGATTGGTTTGATATGTTGTGGTTGAACAGGAATGTTTGTCAGGCAGGGCCTGGTGTGTTTGATTGTTTGTTTGGTGT TTTGGTGGAGCTGGGGATGCTTGAGGAAGCTAGTCAGTGCTTTTGGAAGATGAAGAAGTTCAGGGTTTTGCCAAAAGTGA GGTCCTGTAATGAGCTTCTTCACAGGCTTTCAGAATCGGGCAAAGGGAATTTGTCGTTGAGTTTTTTCAAGGACATGGTT CGGGCTGGCCTTTCGCCCTCAGTTTTTACATATAATATAGTGATAGGCTATTTGGCCAAAGAAGGGGACTTAGGAACTGC TAAGAGATTGTTTGAACAGATGAAACAGACAGGTGTGATGCCAGATGTAGTTACTTATAATTCTCTCATTGATGGGTATG GGAAGCTAGGATTATTGACCGAAGCGGTTATTGTTTTTGAGGAAATGAAAAATGCAGGATGTGAGCCAGATGTTATAACA TTCAATTCACTAATTAATTGCTTCTGTAAATTTGAAAGAATTCCTCAAGCTTTTCAGTATATGCGTGAGATGAAGGAAAG AGGGCTGAGACCAAATGTTGTAACTTATAGTACACTGATTGATGCCTTTTGCAAGGCAGGCATGATGCTTGAAGCACTTA AATTTTTTGTTGATATGATACGTGTAGGTCTTCAACCCAATGAGTTTACATATACATCTCTGATTGATGCAAATTGTAAA ATAGGCGATCTGAATGAAGCATTGGAACTGGCTAGTGATATGTTGCGGGCTGGATTAAAATTAAACATTGTCACCTATAC TGCATTATTGGATGGTCTTTGTGAAGATGGTAGAATGAAAGAAGCAGAAGAATTATTTAGGGCATTGTCAGAAGTCGAGG TGGCTCCTAATGTGCAAATTTATACTTCTCTTATTCATGGATATATCAAGGCTAAGATGGTGGAGAGTGCCATGAATATT ATAGAGGAAATGAATAAGAAAAACTTGAAACCAGATCTGTTGCTGTATGGAACCAAAATTTGGGGTCTTTGTAGCCAAAA TAGAATAGAAGAATCTGAGGCTGTAATACATGAGATGGTGGATTGTGGTCTGACTGCAAATAGCTATATATACACAACCC TTATGGGTGCATATTTTAAGGTTGGGAAAACCGTGGAGGCTGTTAATCTATTACAAGAGATGCAGGAAAAGGGTATTGAG ACAACAGTTGTAACTTATGGTGTACTAATTGATGGTTTATGCAGAAAAGGTCTAGTTCAACAGGCTTTTAGTTATTTTGA CCACATGACTAAAATTGGTTTGCAACCTAACATTATGATTTTTACGGCTCTGATTGATGGCTTTTATAAAAATGATTGTG TTGAAGCAGCTGATAAGCTGTTCAATGAGATGCTGGATAGGGGAATCAGTCCAGATAAATTAGTTTATACTGCTTTGATT GATGGGAACCTGAAGCACGGAAATCCTGAACAAGCTTTGAGTTTGCGAAATAGAATGGTTGAAATGGGTATGGAGCTTGA CCTGAAAGCTTATACTTCATTGATTTGGGGTTTTTCACACTGTGGTCAAGTACAACAGGCAAAGTCATTTCTGGATGAGA TGCTTGGGAAGGGCATCATTCCTGATCAGGTTCTCTGTATTTGTCTTCTGAGAAAATATTATGAGCTTGGAGACATCAGC GAAGCTCAGGAACTTCATAATGATATGATGAGGAGGGGCCTTGTTTCTGGGACAATGGACATAACAATTCCCTCTGTACG CACTTGA
Protein sequence (LotjaGi4g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHSLRNIGSRVSFFYSSSRRYPFPHFLTLPSSPYKDSIFASPMIWVTSFMCVIRYPFASKPSFDDIVSETVRSFLQNDD AHHMFDSVLAPIWVSKVLVKLKEDPKSALKFFKMAGERVGFRHSSESYCILAHILFCGMFYVDAKNVIKEWILSRREFPG CDWFDMLWLNRNVCQAGPGVFDCLFGVLVELGMLEEASQCFWKMKKFRVLPKVRSCNELLHRLSESGKGNLSLSFFKDMV RAGLSPSVFTYNIVIGYLAKEGDLGTAKRLFEQMKQTGVMPDVVTYNSLIDGYGKLGLLTEAVIVFEEMKNAGCEPDVIT FNSLINCFCKFERIPQAFQYMREMKERGLRPNVVTYSTLIDAFCKAGMMLEALKFFVDMIRVGLQPNEFTYTSLIDANCK IGDLNEALELASDMLRAGLKLNIVTYTALLDGLCEDGRMKEAEELFRALSEVEVAPNVQIYTSLIHGYIKAKMVESAMNI IEEMNKKNLKPDLLLYGTKIWGLCSQNRIEESEAVIHEMVDCGLTANSYIYTTLMGAYFKVGKTVEAVNLLQEMQEKGIE TTVVTYGVLIDGLCRKGLVQQAFSYFDHMTKIGLQPNIMIFTALIDGFYKNDCVEAADKLFNEMLDRGISPDKLVYTALI DGNLKHGNPEQALSLRNRMVEMGMELDLKAYTSLIWGFSHCGQVQQAKSFLDEMLGKGIIPDQVLCICLLRKYYELGDIS EAQELHNDMMRRGLVSGTMDITIPSVRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 73 | 240 | 168 | 1.9E-8 | ||
| ProSiteProfiles | 177 | 211 | 35 | 7.87 | ||
| Pfam | 183 | 208 | 26 | 0.35 | ||
| Pfam | 211 | 255 | 45 | 3.2E-8 | ||
| ProSiteProfiles | 212 | 246 | 35 | 9.12 | ||
| PANTHER | 219 | 400 | 182 | 7.0E-142 | – | |
| PANTHER | 219 | 400 | 182 | 7.0E-142 | – | |
| Gene3D | 241 | 311 | 71 | 7.7E-22 | ||
| SUPERFAMILY | 245 | 488 | 244 | 3.4E-5 | – | |
| ProSiteProfiles | 247 | 281 | 35 | 12.178 | ||
| TIGRFAM | 249 | 283 | 35 | 9.7E-8 | ||
| Pfam | 281 | 330 | 50 | 6.2E-19 | ||
| ProSiteProfiles | 282 | 316 | 35 | 14.261 | ||
| TIGRFAM | 284 | 318 | 35 | 6.7E-10 | ||
| Gene3D | 312 | 380 | 69 | 7.4E-25 | ||
| ProSiteProfiles | 317 | 351 | 35 | 13.077 | ||
| TIGRFAM | 319 | 353 | 35 | 3.5E-8 | ||
| Pfam | 351 | 400 | 50 | 2.0E-18 | ||
| ProSiteProfiles | 352 | 386 | 35 | 13.428 | ||
| TIGRFAM | 354 | 388 | 35 | 8.1E-10 | ||
| Gene3D | 381 | 451 | 71 | 7.2E-21 | ||
| ProSiteProfiles | 387 | 421 | 35 | 11.63 | ||
| SUPERFAMILY | 388 | 690 | 303 | 8.34E-5 | ||
| TIGRFAM | 389 | 422 | 34 | 5.9E-5 | ||
| PANTHER | 390 | 574 | 185 | 7.0E-142 | – | |
| PANTHER | 390 | 574 | 185 | 7.0E-142 | – | |
| Pfam | 418 | 447 | 30 | 6.3E-11 | ||
| ProSiteProfiles | 422 | 456 | 35 | 12.057 | ||
| TIGRFAM | 424 | 458 | 35 | 1.1E-6 | ||
| Gene3D | 452 | 520 | 69 | 2.9E-17 | ||
| Pfam | 456 | 492 | 37 | 2.4E-8 | ||
| ProSiteProfiles | 457 | 491 | 35 | 11.805 | ||
| TIGRFAM | 460 | 492 | 33 | 1.1E-6 | ||
| ProSiteProfiles | 492 | 526 | 35 | 8.714 | ||
| Pfam | 500 | 524 | 25 | 0.34 | ||
| Gene3D | 521 | 590 | 70 | 2.9E-19 | ||
| ProSiteProfiles | 527 | 561 | 35 | 11.334 | ||
| Pfam | 527 | 575 | 49 | 4.1E-14 | ||
| TIGRFAM | 529 | 560 | 32 | 2.9E-7 | ||
| PANTHER | 543 | 734 | 192 | 7.0E-142 | – | |
| PANTHER | 543 | 734 | 192 | 7.0E-142 | – | |
| ProSiteProfiles | 562 | 596 | 35 | 12.079 | ||
| TIGRFAM | 564 | 597 | 34 | 4.9E-6 | ||
| Gene3D | 591 | 660 | 70 | 3.4E-17 | ||
| Pfam | 596 | 642 | 47 | 1.9E-12 | ||
| ProSiteProfiles | 597 | 631 | 35 | 11.203 | ||
| TIGRFAM | 600 | 632 | 33 | 3.1E-8 | ||
| ProSiteProfiles | 632 | 666 | 35 | 10.194 | ||
| TIGRFAM | 635 | 667 | 33 | 1.8E-4 | ||
| Gene3D | 661 | 732 | 72 | 1.7E-12 | ||
| ProSiteProfiles | 667 | 701 | 35 | 11.323 | ||
| Pfam | 670 | 699 | 30 | 4.3E-5 | ||
| TIGRFAM | 670 | 702 | 33 | 3.7E-4 | ||
| ProSiteProfiles | 702 | 736 | 35 | 9.361 | ||
| Pfam | 708 | 734 | 27 | 0.077 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0017600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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