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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0022500 |
| Transcript ID | LotjaGi4g1v0022500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G34560.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2; TrEMBL-Plants: tr|I3SHP0|I3SHP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0022500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2792757..2799520) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTCACTCTTCACAGACGCGAAAGTGTTTCTAGAGAGAGAAACACTTTCTCAACGCTCGCGCTCTCTCTCTCTCTCTA AAATGGCCGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGTTCAATTTCCCTCTCCTTTTCCGTTTGTTTCCCGA GAAAATTTCCAAACGCGATTCTCAATTACTTCTTTTCTCATTCAATTACTACAACCGACGATTCTACTAGAATTACTTGC TACACTAAATTGAATCTCTGTTCAGCAATGGAATGGTGATTTTACTTTTCAATTAGAACTGTTCTAGTTTTTCCGATCGA TTTTCGCTTGTTTTTCTTACTAGCTTGTGAAATTTAGTTGAAATTATACTTGCTTTGTAATATCTAGATTTGTTTCGTTC GTTTTCAGTTTTGTTGATTTGATGTGATCTTAAATAATCTTGATCTGATGGACTGGATTTTAGTTTTTTACCGAGAATTT ACGTTGTTCGTTCTCAATTTTGATCTCCAGGACTTCAAATTGTACTATGATTCGAAGTTTGGGAGGAAGAAGGTTGTGCA GAATGGTGAGAATGCTGATAAAGCTGTTGGTAATGGAAGTTCGATGAGCGTAGTATCGAATGGTAATGTGCATTCCAAAA GGTCATCGGATATGGCAATTTACGAGCAGCTTCGGAGCCAGGTAGTACTACCGTGTGTCATACATCATCAACTGTCACTG ATGATATTACTTCAAATTTCACTGATATGTGATTTATCATGCTTCAATTTTCTGTGTTTCAGGGGCAGAATGGGATCCAC ACAAATGATGTTTCACCAAACAATATGGATGAGAGGCCGTAAGTATCTTCGATCCACTACTTTGTATTCTTGGGGCTTGT AGTTAGTGGATACTTCTGTTCTGCTGTGAGAATTAATCAAATCAAATCAAAGGAACAGTATTAGCATACTTGAGTTGTGA ATCAGGTTTATGATTGGATATTCAATAGCTAGTTGACCAACTATTAAAAAGCCGTTGTTTTGTTAATTAATTAGCCCTTG GAAGTTTGTTAATTTGGTAATGGACTGGTAGTGGTGTACTATTTTTTTGTATCGCTCTGTTCTCTGTAGTATATTTCCAA AGCCATGTAACTGTTCATGCTAACAATGCAAATAAATATTGCTCAAGATAATACTATATTCTCTGTTCTCTGCACTATGA TCGTTCACCAAAGTGATAATGTGTGCATGAACCCAAAACATATAGTTGTGTATATTCGAACAGCCACTACTGAAACTGGT ACTTTGATATTAACTCGTTATTGTAACCGTTAGTAGTATCATTTCATGAGTTCTCTGACTCTAAAGGGAAGAAACAGATA AATGTCATACATATGTGCATCTTTAAGCAGCCACAACTGATATTGTTCCTTTGATCTTTGCTCATAATTGTAACCATCGA TAGCAGCATCTTATGATTTCTGTGACTCTAAGGGACTATTTGGAAGACAGATTAATTCTTCATTCTCTAAACAACTGATA ATTATCCTTAACATTTTCAGGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTT AAGTAGGTAAATGTTCTCCTCTCGGTCTTTGACACCCCCTTGAGACAGCTGTTGGATACGTGGACGTTCTGTTTTTATCA AGTTTTTTCACTTGTGATTCTATATTGTAAGTTCTACTTTCATGCATGTTCATCATTGCACATCATATCATGGGCAGGGA TATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATAAAGGGGCTGGAGAATGCAAAACGCTTACTTAAAGAAGCTG TTGTAATGCCAATTAAATATCCCAAGTAAGTATTAATTGAAAACTAACTACGCGCAATCTTCCTTAGGGCTATGGGAATT CACTTTGTTTCACTACTTGTCAAGATATTCTTGTATATGCTACAAATGAGACCTTTTTGTTTGATGCAGTGGTTCATCTA CGCTGATAAATAAATAGACTCCCCTTTCTTTTAATGTATTCAGATGAAAGAAGTGATATTACAAACATTGAGAAATCAGA TTGACTTTTTCTCATTTTAATTTAACTGTGATGGCTTTCATACTGCTTTAATTTTGTAAGCAGTGTCTTATGTGTTTTAT TCTACTACATGAACCAATATTTTACACGAACTTGCCAAGAAATAAATTTCATTATATATTTCATGATGTTATATGGTCTG GAACTAGATTCGATATACAAACAGATGGAAGTTCCTGTATTTTGGGTCACTTATATGTCTATCCTCCTTTACTATCTCTA GTGAATAAATCATACATATTTTAATTTGTCAAGCTCAAGCATTTATATGGCTTTTTGCAGCATCAAAATATTGGTTTGAA TGAGTCCTTAGACAATAGTATAATGGCCTCTCTATTGCAACTTTACCTCAGATTGAACCTATAGTAGGTTGCACTTGCAG CATGCAAGCAAGGGTTTTTGGAATTTTTCTATCTTAGTGGGGTCTGGTACCTCTACTGAGTAAAATACCCGAGTCATGAT CAGATGCTTCTCCCTTCACACCTTTTCGGGGATAGAGTAGTTTTCTCATCTTCTTAACTTATGGGTTTTAGTCTTTTATC TCATGGTTTCTTCAACTGTGCGATTTACAAATGGATTGTACAGCTCTTATGAGCAAATGCATTTGTATTCAGACTCATGT TATCAATGCTGCTTGTCTGAAGATAGGAAAGCAACTTATGGCCTCAAAATTTGGTGTTTCACAATTTTAACCACAAGCAT CACCGGTTTCAGAAAAAAAAATTTGTGAGCTGGATTTCAAGCATATAGTAATGCTAAAAATAGTTTTGCAAGATTTAAGA TATTGTCCTTAGACGGACAATTGACTGATTCCTACGCTACACTTGCATATCTGCAGATAAAAAATTTGCCTCAGATACAA AGTGGAATCTTTTCTCATGGTCAAGCTGATCTTTCTCATTTGTGTAGGTACTTTACTGGTTTGTTATCACCATGGAAGGG AATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGGTTTGTATTAATATTCCCTCAGAAAATTTTATATTGTTGTCTCCTC AGTGTCATTGTAAAAATTGTAACAGAATGTTATTTTTGTGCATGAATAAAATTACATGTTTTTAAATAAATTCTGTTGCA GATAATAATATATAGCTTTTCTATTTTTATATTTTGATGATTGTGAATGTAAGTTTTTATATTTCGAATAATGCATAACT GTACTGTTCATTCAAATGTTGCAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAATATTTC AGCATCATCTGTTGTCAGCAAATGGCGAGGCAAGTTACTAACAACATTTCCCCCTCTTTTAGAGTATTTATGTTATGCAA ATCTTAATCTAGGTATGAAACTCGAAAGTGTTCACTTTTTGGAGAAAGTGACTTAAACCTCTTGCTGATGCATCAGTATG AGATAACGGTAGTATAAATTTATTTTTGAGAGTAAATAAAATAATATTTTTCAGCTGTTGATGATAGCACTAAATGTCAT TTGCTTAATACCCTCATCCTCTGTTTTACTTAGCGCAATAGATACAGACAGGCGCACACACAATGTATCATATTAAAACA CTGGTCTTGAAAAGAGCTGCTCACACAACTTTGAATAGCATTGATGGTTTTGAAAAGAGCTGCTTTCACAACTCTTTAGG CACTGTTTAACCTGGACCACTTGTTCCTCTTCTCTACATCTCATTGTGTACAGATGATTTGTCAGAAAAGAGTCTGTGTT TATAGATGACACTACTTTAACATTTAATAATAGCCTTAAAAAATTAATCTCTTTGAATAATATCATGGTTTTTTAATGAC ATTATATTTGGCGCATACAAGATGTTGAGAGCTAATTCAATACTAATTTTTTCTGAAATTACAATGCAAAAAGATAAAAT GTTGTAATATTATTTTTATGTCATTAGAATTTTATTTTGAATTTTGTAGATTATGGTGCAGCTACTTATATAAAACTCTG ACATTAATTTTTTTACGAAGAGACTTTGAATTAGAACTTAATTAAGTTGTCCATTTTATATTTCCAACATCATGTTCACA TGAAAAAGAAAAAAATTCATGGAAGTGAAATCATTCGTGTTCTCACTGCAAAATATGTCCACTGTCTAAATCCCTGTATT TCCCCAAAACCATTAAATCATTAATCTGTTTTGTAAAGATGTGTTTTCTTGGCTACTTCATTTTAGTTGCTCGCTTGTCT GCCACCATTTCTTTTTCTTGATAAAAGAGAACTTTAAAGTGCTCCTCATTCTTCTATCTATTTATTGTGGTTTGCCAACA TTTCCATTTACAAAACTTATTTTAGATTTCAGGCGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGCATC ATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGAAGCA AGTAGACGATTGAAAACTGAGCTACTCATTCAGGTGATGCTTGTTTCCTATGTCGAAGCATCCTTTCATAGTCATTGAGT TACTAATTAGATGGTAGTAATCTCAAAATCATGCATTTCTTGTAGCTTCCTTGCAGGATGTAGGATGGTCCTTAAACCTC TCTCACGTACTTTGAACAGCAAACAACTATTTTGGATAGGTTTTTTAAGAAAAATATCCAAATAGATTGAAAAAAAATTG CTTTGGAACCTAGCTTTCATTCTTTGTTCTATTAGCTGAGATATAAGCTTCCCTTGGTGGTTGGCATTTGAAACTGAAAG ATCATTCTTTTAATTCGGGAGCTTTGTACCCTCTGAAAATTCAGTCTCAGTTCATCTTAATAAGTTAATATGAATTTATT TACAATGGAACGGCATATGTTTTCTGCTGTGCTTTGTTGGACATTAATCATTTCGATTAGATTGCAGATGGACGGCTTAA CACGGACAGATGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTT GAGAAGCGAGTATCCTTCAAATATAAGCTTATGCTTAGTGTTAATGATAATTGAATAGGTCAAATTGTTCTAGTCCTCAA ATTACATTTTACTTCATCTTCATGCATTTGGAAATTCATCTTGGGGAAGAAACATGTATGATCTATCTTAAGGTTTCATT TTCTTTTTCAGAGAATGGAATAAATTATTCGGCGTTTCCTCTCTTACCTCATTGCTTATGCTTTATAGACTATAGAATTT GAACTTCTATTCTTTACAAATGAACCTGGCATTCTACCTAGGTTGCTTGGTTTGACGGTTCAAATTTCAATTTCCATTTT AATTTGACTGTGTGTAGGCAGGCACCCATTGATAGAGAAGTCTTTGTAAACTTGGTTTGCATGAAACTCACTGTATCTGT TTTTTTAGTGCATGTTTGGATACACCGGTTGAAAACCATGGTGAAGCCAATATCATGGTGGATAACCACGAGAGTTAAGG CAAGTTGCTTTTATGCACTGTGATTTTGGCTCACTGTGGGTTTACAGTATGTATCCAAACATGCTCTTAATCTTTTTGCT TATCCACGATATTCAGGACATGCAGGAATTTACTATCTTATATCCATTTTGTAAGATGAAAATGTTGCTGCTTCATTTTA AAACCCGTTCATTGCCAACTACTGTAGAGAGTAGATCATAGTTCAAAGCTTATTTAGATGATGCCCAATAAGCTATCTGA TCTTGCAATTGAAAGCTCTGTTAACCCTTGTTAATGGTTGTCCTTTGACTATATTTGAAAGATCCTTGTACCACTTCCTG AACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTG GTCAACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTTAAGACGTTT GATGTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGGTAAGTATCTCGATTATAGAATCTACCCTGTCTACA TTGGAACACTTATAGCTGTTTCTTTTAAGTTGATTTTCAAATATGAGCAAAATTCTCATTGCATTTGAAACAATGTGCTG GCTATTTACATACTAATTTAAATTTTACTCCTTATGAAATAAAAGTATTTTGTTGGATTGCAGAGCTACCAAAAGTTGGG CCAATCAGACCTGAGGATATACAGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAA GTTTAATGCTGATTATGGTAGTCAAATACTTCAATGAAAAGATGTAGTTGTTATTGTTAGCTTGTCCAAGATTAAGTTGT CATAAAATTGCTGTTGAACCACTAGGAAAATATAAAACATGTTATTTACAGATTTTCTTGAGATGCTTCATATTATTCTA GTGAGTGACTATATCAATTGAACGCTTTCTGAATGGTTGTAATTTTTTACAATCCCCAGATTGTGCTTGTGTAGCAGTCA TTTTTTACAAAATTTCTATGCTACTTGGTATTCATTTTTTTTCCCCATTATGAGTACCAAAAATTTGTACTTAAGTAACA ATCGATTGTCATTATTATTTCAATATTCCTTAATAATTTAGTTT
CDS sequence (LotjaGi4g1v0022500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGATGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTACTATGATTCGAAGTTTGGGAGGAA GAAGGTTGTGCAGAATGGTGAGAATGCTGATAAAGCTGTTGGTAATGGAAGTTCGATGAGCGTAGTATCGAATGGTAATG TGCATTCCAAAAGGTCATCGGATATGGCAATTTACGAGCAGCTTCGGAGCCAGGGGCAGAATGGGATCCACACAAATGAT GTTTCACCAAACAATATGGATGAGAGGCCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGC AGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATAAAGGGGCTGGAGAATGCAAAAC GCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGGTTTGTTATCACCATGGAAGGGAATT CTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAA TATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGC ATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGAA GCAAGTAGACGATTGAAAACTGAGCTACTCATTCAGATGGACGGCTTAACACGGACAGATGAACTTGTTTTTGTTTTGGC TGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCTGAAC CAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTC AACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTTAAGACGTTTGAT GTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGAGCTACCAAAAGTTGGGCCAATCAGACCTGAGGATATAC AGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAAGTTTAATGCTGATTATGGTAGT CAAATACTTCAATGA
Protein sequence (LotjaGi4g1v0022500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQNGENADKAVGNGSSMSVVSNGNVHSKRSSDMAIYEQLRSQGQNGIHTND VSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGI LLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHE ASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLV NQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGS QILQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 402 | 399 | 5.5E-221 | – | |
| PANTHER | 4 | 402 | 399 | 5.5E-221 | – | |
| Gene3D | 118 | 395 | 278 | 2.1E-104 | – | |
| SUPERFAMILY | 119 | 385 | 267 | 8.5E-55 | ||
| CDD | 127 | 291 | 165 | 1.37375E-25 | – | |
| SMART | 156 | 293 | 138 | 2.4E-19 | ||
| Pfam | 160 | 290 | 131 | 1.3E-39 | ||
| Gene3D | 292 | 380 | 89 | 2.1E-104 | – | |
| Pfam | 317 | 353 | 37 | 6.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0022500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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