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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0022500 |
| Transcript ID | LotjaGi4g1v0022500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G34560.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2; TrEMBL-Plants: tr|I3SHP0|I3SHP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0022500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2793084..2798285) extracted from Lotus japonicus Gifu genome v1.2.
AAACATATAGTTGTGTATATTCGAACAGCCACTACTGAAACTGGTACTTTGATATTAACTCGTTATTGTAACCGTTAGTA GTATCATTTCATGAGTTCTCTGACTCTAAAGGGAAGAAACAGATAAATGTCATACATATGTGCATCTTTAAGCAGCCACA ACTGATATTGTTCCTTTGATCTTTGCTCATAATTGTAACCATCGATAGCAGCATCTTATGATTTCTGTGACTCTAAGGGA CTATTTGGAAGACAGATTAATTCTTCATTCTCTAAACAACTGATAATTATCCTTAACATTTTCAGGCAGAAGTCTTTGCT TCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGTAAATGTTCTCCTCTCGGTCTTTGACAC CCCCTTGAGACAGCTGTTGGATACGTGGACGTTCTGTTTTTATCAAGTTTTTTCACTTGTGATTCTATATTGTAAGTTCT ACTTTCATGCATGTTCATCATTGCACATCATATCATGGGCAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAA GCATAAAGGGGCTGGAGAATGCAAAACGCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTAAGTATTA ATTGAAAACTAACTACGCGCAATCTTCCTTAGGGCTATGGGAATTCACTTTGTTTCACTACTTGTCAAGATATTCTTGTA TATGCTACAAATGAGACCTTTTTGTTTGATGCAGTGGTTCATCTACGCTGATAAATAAATAGACTCCCCTTTCTTTTAAT GTATTCAGATGAAAGAAGTGATATTACAAACATTGAGAAATCAGATTGACTTTTTCTCATTTTAATTTAACTGTGATGGC TTTCATACTGCTTTAATTTTGTAAGCAGTGTCTTATGTGTTTTATTCTACTACATGAACCAATATTTTACACGAACTTGC CAAGAAATAAATTTCATTATATATTTCATGATGTTATATGGTCTGGAACTAGATTCGATATACAAACAGATGGAAGTTCC TGTATTTTGGGTCACTTATATGTCTATCCTCCTTTACTATCTCTAGTGAATAAATCATACATATTTTAATTTGTCAAGCT CAAGCATTTATATGGCTTTTTGCAGCATCAAAATATTGGTTTGAATGAGTCCTTAGACAATAGTATAATGGCCTCTCTAT TGCAACTTTACCTCAGATTGAACCTATAGTAGGTTGCACTTGCAGCATGCAAGCAAGGGTTTTTGGAATTTTTCTATCTT AGTGGGGTCTGGTACCTCTACTGAGTAAAATACCCGAGTCATGATCAGATGCTTCTCCCTTCACACCTTTTCGGGGATAG AGTAGTTTTCTCATCTTCTTAACTTATGGGTTTTAGTCTTTTATCTCATGGTTTCTTCAACTGTGCGATTTACAAATGGA TTGTACAGCTCTTATGAGCAAATGCATTTGTATTCAGACTCATGTTATCAATGCTGCTTGTCTGAAGATAGGAAAGCAAC TTATGGCCTCAAAATTTGGTGTTTCACAATTTTAACCACAAGCATCACCGGTTTCAGAAAAAAAAATTTGTGAGCTGGAT TTCAAGCATATAGTAATGCTAAAAATAGTTTTGCAAGATTTAAGATATTGTCCTTAGACGGACAATTGACTGATTCCTAC GCTACACTTGCATATCTGCAGATAAAAAATTTGCCTCAGATACAAAGTGGAATCTTTTCTCATGGTCAAGCTGATCTTTC TCATTTGTGTAGGTACTTTACTGGTTTGTTATCACCATGGAAGGGAATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGG TTTGTATTAATATTCCCTCAGAAAATTTTATATTGTTGTCTCCTCAGTGTCATTGTAAAAATTGTAACAGAATGTTATTT TTGTGCATGAATAAAATTACATGTTTTTAAATAAATTCTGTTGCAGATAATAATATATAGCTTTTCTATTTTTATATTTT GATGATTGTGAATGTAAGTTTTTATATTTCGAATAATGCATAACTGTACTGTTCATTCAAATGTTGCAGACAATGCTTGC AAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCAAGT TACTAACAACATTTCCCCCTCTTTTAGAGTATTTATGTTATGCAAATCTTAATCTAGGTATGAAACTCGAAAGTGTTCAC TTTTTGGAGAAAGTGACTTAAACCTCTTGCTGATGCATCAGTATGAGATAACGGTAGTATAAATTTATTTTTGAGAGTAA ATAAAATAATATTTTTCAGCTGTTGATGATAGCACTAAATGTCATTTGCTTAATACCCTCATCCTCTGTTTTACTTAGCG CAATAGATACAGACAGGCGCACACACAATGTATCATATTAAAACACTGGTCTTGAAAAGAGCTGCTCACACAACTTTGAA TAGCATTGATGGTTTTGAAAAGAGCTGCTTTCACAACTCTTTAGGCACTGTTTAACCTGGACCACTTGTTCCTCTTCTCT ACATCTCATTGTGTACAGATGATTTGTCAGAAAAGAGTCTGTGTTTATAGATGACACTACTTTAACATTTAATAATAGCC TTAAAAAATTAATCTCTTTGAATAATATCATGGTTTTTTAATGACATTATATTTGGCGCATACAAGATGTTGAGAGCTAA TTCAATACTAATTTTTTCTGAAATTACAATGCAAAAAGATAAAATGTTGTAATATTATTTTTATGTCATTAGAATTTTAT TTTGAATTTTGTAGATTATGGTGCAGCTACTTATATAAAACTCTGACATTAATTTTTTTACGAAGAGACTTTGAATTAGA ACTTAATTAAGTTGTCCATTTTATATTTCCAACATCATGTTCACATGAAAAAGAAAAAAATTCATGGAAGTGAAATCATT CGTGTTCTCACTGCAAAATATGTCCACTGTCTAAATCCCTGTATTTCCCCAAAACCATTAAATCATTAATCTGTTTTGTA AAGATGTGTTTTCTTGGCTACTTCATTTTAGTTGCTCGCTTGTCTGCCACCATTTCTTTTTCTTGATAAAAGAGAACTTT AAAGTGCTCCTCATTCTTCTATCTATTTATTGTGGTTTGCCAACATTTCCATTTACAAAACTTATTTTAGATTTCAGGCG ATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTGCCAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGAT GCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGAAGCAAGTAGACGATTGAAAACTGAGCTACTCATTCAGGT GATGCTTGTTTCCTATGTCGAAGCATCCTTTCATAGTCATTGAGTTACTAATTAGATGGTAGTAATCTCAAAATCATGCA TTTCTTGTAGCTTCCTTGCAGGATGTAGGATGGTCCTTAAACCTCTCTCACGTACTTTGAACAGCAAACAACTATTTTGG ATAGGTTTTTTAAGAAAAATATCCAAATAGATTGAAAAAAAATTGCTTTGGAACCTAGCTTTCATTCTTTGTTCTATTAG CTGAGATATAAGCTTCCCTTGGTGGTTGGCATTTGAAACTGAAAGATCATTCTTTTAATTCGGGAGCTTTGTACCCTCTG AAAATTCAGTCTCAGTTCATCTTAATAAGTTAATATGAATTTATTTACAATGGAACGGCATATGTTTTCTGCTGTGCTTT GTTGGACATTAATCATTTCGATTAGATTGCAGATGGACGGCTTAACACGGACAGATGAACTTGTTTTTGTTTTGGCTGCA ACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAGTATCCTTCAAATATAAGCTTATGCT TAGTGTTAATGATAATTGAATAGGTCAAATTGTTCTAGTCCTCAAATTACATTTTACTTCATCTTCATGCATTTGGAAAT TCATCTTGGGGAAGAAACATGTATGATCTATCTTAAGGTTTCATTTTCTTTTTCAGAGAATGGAATAAATTATTCGGCGT TTCCTCTCTTACCTCATTGCTTATGCTTTATAGACTATAGAATTTGAACTTCTATTCTTTACAAATGAACCTGGCATTCT ACCTAGGTTGCTTGGTTTGACGGTTCAAATTTCAATTTCCATTTTAATTTGACTGTGTGTAGGCAGGCACCCATTGATAG AGAAGTCTTTGTAAACTTGGTTTGCATGAAACTCACTGTATCTGTTTTTTTAGTGCATGTTTGGATACACCGGTTGAAAA CCATGGTGAAGCCAATATCATGGTGGATAACCACGAGAGTTAAGGCAAGTTGCTTTTATGCACTGTGATTTTGGCTCACT GTGGGTTTACAGTATGTATCCAAACATGCTCTTAATCTTTTTGCTTATCCACGATATTCAGGACATGCAGGAATTTACTA TCTTATATCCATTTTGTAAGATGAAAATGTTGCTGCTTCATTTTAAAACCCGTTCATTGCCAACTACTGTAGAGAGTAGA TCATAGTTCAAAGCTTATTTAGATGATGCCCAATAAGCTATCTGATCTTGCAATTGAAAGCTCTGTTAACCCTTGTTAAT GGTTGTCCTTTGACTATATTTGAAAGATCCTTGTACCACTTCCTGAACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTC CTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATTTGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATAT CCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTTAAGACGTTTGATGTCACAACTTGAACAGAGAGAAGATTTGGTGC CTGAAGAAGGTAAGTATCTCGATTATAGAATCTACCCTGTCTACATTGGAACACTTATAGCTGTTTCTTTTAAGTTGATT TTCAAATATGAGCAAAATTCTCATTGCATTTGAAACAATGTGCTGGCTATTTACATACTAATTTAAATTTTACTCCTTAT GAAATAAAAGTATTTTGTTGGATTGCAGAGCTACCAAAAGTTGGGCCAATCAGACCTGAGGATATACAGGCAGCTTTGAA GAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAAT GA
CDS sequence (LotjaGi4g1v0022500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATAAAGGGGCT GGAGAATGCAAAACGCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGGTTTGTTATCAC CATGGAAGGGAATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAG ACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCGATTCAGAGAAATTAGTGAAGGTGTTATT TCAGCTTGCCAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCAC GCAGTGAACATGAAGCAAGTAGACGATTGAAAACTGAGCTACTCATTCAGATGGACGGCTTAACACGGACAGATGAACTT GTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGT ACCACTTCCTGAACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCT ATGATTTGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCT TTAAGACGTTTGATGTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGAGCTACCAAAAGTTGGGCCAATCAG ACCTGAGGATATACAGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAAGTTTAATG CTGATTATGGTAGTCAAATACTTCAATGA
Protein sequence (LotjaGi4g1v0022500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK TTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDEL VFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQP LRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 300 | 300 | 1.6E-189 | – | |
| PANTHER | 1 | 300 | 300 | 1.6E-189 | – | |
| Gene3D | 16 | 293 | 278 | 7.9E-105 | – | |
| SUPERFAMILY | 17 | 284 | 268 | 3.04E-55 | ||
| CDD | 25 | 189 | 165 | 8.60655E-25 | – | |
| SMART | 54 | 191 | 138 | 2.4E-19 | ||
| Pfam | 58 | 188 | 131 | 6.9E-40 | ||
| Gene3D | 190 | 278 | 89 | 7.9E-105 | – | |
| Pfam | 215 | 251 | 37 | 4.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0022500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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