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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025300 |
| Transcript ID | LotjaGi4g1v0025300.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G14730.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730; TrEMBL-Plants: tr|A0A072UQS2|A0A072UQS2_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0025300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3092490..3097347) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGAGCTTTAGGGGAAAAAGAGAAGGAACACAAGATTCTCCTTCACACTTGCTGCAACTGCAATCACCACCTGGTTCT CCTCCTCTGATTCTCTCTTTTTTCTTGGTTTTTGAGTGTATCAGCAATCGAACTCACGCCGCAACTGCAATCACCAGTTG CTTTTTGAGCGTTTGCATCTCATGCCGCAACTGCAATCACCACGACGAGCTCGTTGAGCGTTCCCATTTTCCAGCAACAG GAAGACATTGCATCTCCTAGTCACCCTTTGTTTCAGGTATGCCATTGTTATTTTCTCTATGATTTTGTTGATTGAACCTT CTTAGCTATTGCTTGAAATTGCATTCTCTATGATTTTGTTGATTGACTCTCAACTTTGGTACATCCCTTGTTCGTTATTG ATTTGATGTTGGGTATAAAGGACGTTTATTTATGATAAAAAAGTAGTCTTTATACAGTATTGAATATTGTTTGGAGTTTC GATAACACTGAGCAAAGAAGACCTATGGAAGCACCGGTGAGAGGTAGAGGGAGACCAAAACGAACATGGGAAGATATTGT TAAAAATGATCTCATTATCAATAGTATCCCTCATAATTTAGTTTTTGGTCGAGCTCAATGGCATAGTGTGATCCATATTG CCGACCTCACTCAGTGGGATACGGTTTTTGTTGTTGTTGATGATTTCCAACAAACTACTCTATGGGCATATGACCTATTT CTAGTTTCTTAAATTTATACATATGTATCAGTGTTTCCTTGATCAGATTTGACCAATTTCTTTGCTTTTGTTTGGTCAAA GTCCCCACTTGGACATACAAAGAAATGTATTTTCTAATACTAGTTCCCATATTGCAGGTCTTTCCCATACATATAAAGGG AATTGCTGGAAGCTTGGTGGTCTTGTTGACCTGGTTAGGAGCGGGGTGGTTTCATATACTTTAAAAGTTTCGTATGAGCT GGAGTTCTCCTGGTAAGCACAGTTAGTAAGCAGTTAGCACGATTGTTACCTCCATCTCTATATGACTGTAATTAGTAACA TTAGTTCATATTGTTTTTTCACAGGTACTTTGTTTTTCTATGCTGGATGTTCCCTCTTAACTATTCCATTTGTAGCAAAA GTAGTCTCACAATCTCAAGGCTTGTCCTTCCCAAACACAGTGGCCGGTTCCTCCGTTTCTCAACCTCACCCTCGTACGAC GTAGGAGCCTGCATTGCCTCCCTTCAATCATGTGCCCACAACACAAACCTCTCCAAAGGCAAGGAGCTCCATTCCCACTT GCTCAAAAATGGCCTATTTTCATCCCCACTCGCCACCACAAGCCTCATCAACATGTACTCCAAGTGTACCCTCATGGACC ATGCCCTTAAAGTTTTCAACTACCCCACCCATCATGACAAAAATGTCTTTGCCTACAATGCAATCATTGCCGGATTCGTA GCAAACAGGCTTTCCCGAGATGGGTTTGGTCTTTATAGGCAAATGCGGCATCTGGGTGTTGTTCCTGATAAGTTCACTTT CCCATGTGTGATCAGAGCTTGTGGTGAAACTGCGGAGGATTCGGAGGTTGAGAAGATTCATGGGTTGTTGTTTAAACTTG GATTGGAATTGGATGTGTATGTTGGCAGTGCTCTGGTTAATACTTATTTAAAGTTTGGGTTGGTGGAGGAAGCGCATGAG GTGTTTGAGGAATTGCCTGTTAGAGATGTGGTGCTTTGGAACTCAATGGTTAATGGGTATGCCCAGATTGGGCACTTTGA GGAGGCCCTGGTGGTGTTTAGGAGGATGAGGGAAAATGGGGTGGTTCCTTGTAGATATACAGTTACTGGTGTTTTGTCTA TATATTCTGTGGTCGTGGACTTTGACAATGGACGAGCTGTTCATGGGTTTCTGACAAAAATGGGTTATGCCTCAAGTGTT GTTGTTTCAAATGCACTGATTGATATGTATGGGAAGTGCAAGTGTACTAGTGATGCCTTGAATGTATTTGAGGTGATGGA TGAGAAAGATATCTTCTCATGGAACTCGATAATGTATGTTCATCAACGGTGCGGTGATCATTATGGAACTTTGAGGCTTT TTGATAGGATGCTAGGAAACAGGATTCAGCCCGATTTGGTTACAGTCACAACAGTACTGCCAGCCTGTACTCATCTAGCG GCCCTGATGCATGGCAGAGAGATACATGGGTATATGATTGTAAATGGATTGGGGAAGGAAGGGAGAAACAGTGATTTTGA TGATGTTATATTGAGCAATGCTTTGATGGACATGTATGCGAAATGCGGAAACATGAGAGATGCTCGCATGGTTTTTGATA ATATGGGAGAGAAAGACATGGCCTCATGGAACATCATGATCACGGGTTATGGAATGCACGGTTATGGCGATGAGGCATTG GATACGTTTTCTCGAATGTGTCAAGCTCGTATGGTACCTAATGAAATCAGTTTTGTTGGATTGTTATCTGCGTGCAGCCA TGCTGGCATGGTAAAGGAGGGGCTTGAGTTTCTTGCAGAAATGCAGTCAAAATATGGTGTTACACCATCTATTGAACACT ACACCTGTGTGATTGACATGCTTTGTCGAGCCGGGCAGCTCGTGGAGGCTTATGATTTATTTCTAACAATGCCCTTTAAG GCTGATCCGGTAGGATGGAGATCTTTGCTAGCGGCATGCCGTCTCCACAAGGACACAGACTTGGCTGAGATTGCTGCAAG TAAGGTGATTGAACTTGAGCCAGGTCACTGTGGAAATTATGTGCTAATGTCAAATGTTTATGGAGTGGATGGTCGATATG AAGAAGTATCAGAGTTGAGGCACACAATGAGGCAACAAAATGTGAAGAAAAGACCGGGATGTAGCTGGATTGAACTCATG AATGGTGTGCATGTTTTTATAACGGGTGATAGGACTCATCCCCAAACCAACTTTATTTATGCTGGTTTAAATTCATTGAC AGCAGTTCTGCAAGAGTATGGATATGTACCATTTATCTAGCATTTGGCATGCAAAGAAAGTTAGGCATGGATACATGAGG ACCTTATTCTTATGATGGATTATATGTTGAAGAGCAGATCAATAAAGCATAGGCCCTTCTATCTTGGACTTCAGATAAAG TAACCCTTGATGTATCATTCTATAAGTTGCAGAAGTTTAGGACATACTAAATACATAAGATTAATTCAAGAGTTTGGATA AGCATTGTCAGTTCCGTCCTATCTTGATTCTGGTGGCCCCTTGTTTTTATCTCATTAAGCATTTATGAATCCGAGTATGG AACCGGTTTTTTCCAATTGTATATATACATACATATATACAAACATTTGTAATAACTTTTCTGCTCTATTTGCTTTTACT TCTTTCTTTTCTTTTGACAGAATTACAGCCGGGATCTTTTCTTGTTCCTCTACCTTCTTCTGATCATATTTTCAGCAATG ACTTCTTTGAAAAAACATAATGGCTCATCAGCATTTTTCTGGAAGAAGCATACTTTACCTTAATCGGCATCAAACAGAGG AATGGAAAAGATGGATGCAGATTGGTGCTCCTTTCAGAAGATGTGAAAACTTGTAAATAGAGATGCTATATCTATGTTTG CTTCCCAGAAAGTTATGGTTAAAGTATTAACTTGACCTTTTCTTTGCGTTGTTAATTTAGTTTGAAATTAACATTGTTTT ACCTGCTACAACTTGCCTACTGTGAAAAATTATCCGTTTCCTTTTGGGGTCTCAATATTTTTTTTCTAATGTTTGTAGTT CATTGATTATAATTTATGTCATAATGTATAGGCAGGCTGGCAGGACCATTTAGAGAGATATAGAGGAATGGTCTATCTAT AAAGTTTCAACTCAATACATGTTAGGTATTATGGCATTGTTTGATCATTGTAGCTGACCCTAATATCCTGTGGAAAGGAT TTGATTCTTGTTGTGGTTTTGTATTTTAAATGTTAGCAGATGCCAAGTAGAAAGTGTGGAATACGATCTATTTGATGACA TGTGATGGAAATCAAAGCTTTTAGTTATCAAAATGAAACTAAAATCAATGTAGCTTAATGTTGTCGTAATGCATACTACT CTCGTAATGCATACTACTTTCAACTGCCATAATACATCCAAAATGGTTTGAATTTGTCAGGTACTTATAAGTTATAACCA TTTGTTCATATTTTTGTTCCATTTTGTAGGTCCTCTTTCTAATGTATCATTATTTTGCTGCAACAAAGGTATACAACGCA ATCCGTGTTTTCATTGGATTTGGCAACTTCTCCTATTATTACATCAGAAAATATTTTAGCCTTGCACGCTTTGCTCAGGT AACATAGAATTCTTGACCTTGAATACGATTTTTATCTTACTCACTGTGTACTCTTAACCTGTTACTCTTTTTGCACATAC AATATCCCCTAACTCATAAAACTGCTGTGCAGATGATATGGAAGCTTAATCTTTTTGTGGTCTTCTGTTGTATTGTGCTA AACAATGACTATATGCTATATTTCCAATGCACAAGCTTGTCACTTTGATGGTGTATGGAGCATTGGGCATATATAACTAG TACAAATGTACAATGAAGTTAGCTCGGTGATAACTGTAAAGATTCTTTCATGCTTTCTTGTGGTGATCTTGATTTGGGAA ATTCCTGGATTCTTTGACTTAATCTGGATTCCATTTGCAATCTTTTTTGGGTTAGTACTATACATAATATTTTCTTCTAT ATTATTAGCTTACCTAGGTATTATTAGCTTTTGTATGTAGTTTTTATTTGCAAATTGCAATACATGCTTTTTGCTGCAAG TCCATAAATGTAATCTTTATATGGCAGGTTATACGCATTATGCAAAGCTTGATCTCCC
CDS sequence (LotjaGi4g1v0025300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCTCTTAACTATTCCATTTGTAGCAAAAGTAGTCTCACAATCTCAAGGCTTGTCCTTCCCAAACACAGTGGCCG GTTCCTCCGTTTCTCAACCTCACCCTCGTACGACGTAGGAGCCTGCATTGCCTCCCTTCAATCATGTGCCCACAACACAA ACCTCTCCAAAGGCAAGGAGCTCCATTCCCACTTGCTCAAAAATGGCCTATTTTCATCCCCACTCGCCACCACAAGCCTC ATCAACATGTACTCCAAGTGTACCCTCATGGACCATGCCCTTAAAGTTTTCAACTACCCCACCCATCATGACAAAAATGT CTTTGCCTACAATGCAATCATTGCCGGATTCGTAGCAAACAGGCTTTCCCGAGATGGGTTTGGTCTTTATAGGCAAATGC GGCATCTGGGTGTTGTTCCTGATAAGTTCACTTTCCCATGTGTGATCAGAGCTTGTGGTGAAACTGCGGAGGATTCGGAG GTTGAGAAGATTCATGGGTTGTTGTTTAAACTTGGATTGGAATTGGATGTGTATGTTGGCAGTGCTCTGGTTAATACTTA TTTAAAGTTTGGGTTGGTGGAGGAAGCGCATGAGGTGTTTGAGGAATTGCCTGTTAGAGATGTGGTGCTTTGGAACTCAA TGGTTAATGGGTATGCCCAGATTGGGCACTTTGAGGAGGCCCTGGTGGTGTTTAGGAGGATGAGGGAAAATGGGGTGGTT CCTTGTAGATATACAGTTACTGGTGTTTTGTCTATATATTCTGTGGTCGTGGACTTTGACAATGGACGAGCTGTTCATGG GTTTCTGACAAAAATGGGTTATGCCTCAAGTGTTGTTGTTTCAAATGCACTGATTGATATGTATGGGAAGTGCAAGTGTA CTAGTGATGCCTTGAATGTATTTGAGGTGATGGATGAGAAAGATATCTTCTCATGGAACTCGATAATGTATGTTCATCAA CGGTGCGGTGATCATTATGGAACTTTGAGGCTTTTTGATAGGATGCTAGGAAACAGGATTCAGCCCGATTTGGTTACAGT CACAACAGTACTGCCAGCCTGTACTCATCTAGCGGCCCTGATGCATGGCAGAGAGATACATGGGTATATGATTGTAAATG GATTGGGGAAGGAAGGGAGAAACAGTGATTTTGATGATGTTATATTGAGCAATGCTTTGATGGACATGTATGCGAAATGC GGAAACATGAGAGATGCTCGCATGGTTTTTGATAATATGGGAGAGAAAGACATGGCCTCATGGAACATCATGATCACGGG TTATGGAATGCACGGTTATGGCGATGAGGCATTGGATACGTTTTCTCGAATGTGTCAAGCTCGTATGGTACCTAATGAAA TCAGTTTTGTTGGATTGTTATCTGCGTGCAGCCATGCTGGCATGGTAAAGGAGGGGCTTGAGTTTCTTGCAGAAATGCAG TCAAAATATGGTGTTACACCATCTATTGAACACTACACCTGTGTGATTGACATGCTTTGTCGAGCCGGGCAGCTCGTGGA GGCTTATGATTTATTTCTAACAATGCCCTTTAAGGCTGATCCGGTAGGATGGAGATCTTTGCTAGCGGCATGCCGTCTCC ACAAGGACACAGACTTGGCTGAGATTGCTGCAAGTAAGGTGATTGAACTTGAGCCAGGTCACTGTGGAAATTATGTGCTA ATGTCAAATGTTTATGGAGTGGATGGTCGATATGAAGAAGTATCAGAGTTGAGGCACACAATGAGGCAACAAAATGTGAA GAAAAGACCGGGATGTAGCTGGATTGAACTCATGAATGGTGTGCATGTTTTTATAACGGGTGATAGGACTCATCCCCAAA CCAACTTTATTTATGCTGGTTTAAATTCATTGACAGCAGTTCTGCAAGAGTATGGATATGTACCATTTATCTAG
Protein sequence (LotjaGi4g1v0025300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPLNYSICSKSSLTISRLVLPKHSGRFLRFSTSPSYDVGACIASLQSCAHNTNLSKGKELHSHLLKNGLFSSPLATTSL INMYSKCTLMDHALKVFNYPTHHDKNVFAYNAIIAGFVANRLSRDGFGLYRQMRHLGVVPDKFTFPCVIRACGETAEDSE VEKIHGLLFKLGLELDVYVGSALVNTYLKFGLVEEAHEVFEELPVRDVVLWNSMVNGYAQIGHFEEALVVFRRMRENGVV PCRYTVTGVLSIYSVVVDFDNGRAVHGFLTKMGYASSVVVSNALIDMYGKCKCTSDALNVFEVMDEKDIFSWNSIMYVHQ RCGDHYGTLRLFDRMLGNRIQPDLVTVTTVLPACTHLAALMHGREIHGYMIVNGLGKEGRNSDFDDVILSNALMDMYAKC GNMRDARMVFDNMGEKDMASWNIMITGYGMHGYGDEALDTFSRMCQARMVPNEISFVGLLSACSHAGMVKEGLEFLAEMQ SKYGVTPSIEHYTCVIDMLCRAGQLVEAYDLFLTMPFKADPVGWRSLLAACRLHKDTDLAEIAASKVIELEPGHCGNYVL MSNVYGVDGRYEEVSELRHTMRQQNVKKRPGCSWIELMNGVHVFITGDRTHPQTNFIYAGLNSLTAVLQEYGYVPFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 33 | 168 | 136 | 9.7E-20 | ||
| ProSiteProfiles | 38 | 72 | 35 | 6.018 | ||
| PANTHER | 42 | 155 | 114 | 1.9E-118 | – | |
| ProSiteProfiles | 73 | 103 | 31 | 5.294 | ||
| Pfam | 78 | 98 | 21 | 0.22 | ||
| Pfam | 105 | 152 | 48 | 2.9E-10 | ||
| ProSiteProfiles | 106 | 140 | 35 | 10.402 | ||
| TIGRFAM | 109 | 141 | 33 | 1.8E-5 | ||
| ProSiteProfiles | 141 | 175 | 35 | 6.785 | ||
| PANTHER | 163 | 262 | 100 | 1.9E-118 | – | |
| ProSiteProfiles | 176 | 206 | 31 | 7.783 | ||
| Pfam | 182 | 205 | 24 | 0.044 | ||
| SUPERFAMILY | 185 | 574 | 390 | 1.01E-5 | ||
| Gene3D | 204 | 262 | 59 | 2.6E-6 | ||
| Pfam | 207 | 250 | 44 | 1.9E-9 | ||
| ProSiteProfiles | 207 | 241 | 35 | 14.228 | ||
| TIGRFAM | 209 | 241 | 33 | 1.9E-9 | ||
| PANTHER | 261 | 374 | 114 | 1.9E-118 | – | |
| Gene3D | 263 | 362 | 100 | 1.3E-18 | ||
| ProSiteProfiles | 277 | 307 | 31 | 7.75 | ||
| Pfam | 281 | 309 | 29 | 0.0022 | ||
| ProSiteProfiles | 308 | 342 | 35 | 9.668 | ||
| Pfam | 310 | 339 | 30 | 0.26 | ||
| TIGRFAM | 310 | 343 | 34 | 0.0031 | ||
| ProSiteProfiles | 343 | 377 | 35 | 5.579 | ||
| PANTHER | 361 | 582 | 222 | 1.9E-118 | – | |
| Gene3D | 363 | 482 | 120 | 1.4E-24 | ||
| ProSiteProfiles | 386 | 416 | 31 | 8.977 | ||
| TIGRFAM | 391 | 417 | 27 | 0.0015 | ||
| Pfam | 416 | 464 | 49 | 1.1E-7 | ||
| ProSiteProfiles | 417 | 451 | 35 | 10.775 | ||
| TIGRFAM | 420 | 453 | 34 | 4.8E-7 | ||
| ProSiteProfiles | 452 | 487 | 36 | 8.506 | ||
| TIGRFAM | 455 | 488 | 34 | 3.6E-4 | ||
| Gene3D | 483 | 604 | 122 | 8.0E-13 | ||
| Pfam | 484 | 515 | 32 | 4.6E-6 | ||
| ProSiteProfiles | 488 | 522 | 35 | 8.188 | ||
| TIGRFAM | 492 | 515 | 24 | 4.6E-4 | ||
| ProSiteProfiles | 554 | 588 | 35 | 6.39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0025300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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