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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0025300 |
| Transcript ID | LotjaGi4g1v0025300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G14730.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730; TrEMBL-Plants: tr|A0A072UQS2|A0A072UQS2_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0025300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3093606..3095489) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGTAGTCTCACAATCTCAAGGCTTGTCCTTCCCAAACACAGTGGCCGGTTCCTCCGTTTCTCAACCTCACCCTCGTA CGACGTAGGAGCCTGCATTGCCTCCCTTCAATCATGTGCCCACAACACAAACCTCTCCAAAGGCAAGGAGCTCCATTCCC ACTTGCTCAAAAATGGCCTATTTTCATCCCCACTCGCCACCACAAGCCTCATCAACATGTACTCCAAGTGTACCCTCATG GACCATGCCCTTAAAGTTTTCAACTACCCCACCCATCATGACAAAAATGTCTTTGCCTACAATGCAATCATTGCCGGATT CGTAGCAAACAGGCTTTCCCGAGATGGGTTTGGTCTTTATAGGCAAATGCGGCATCTGGGTGTTGTTCCTGATAAGTTCA CTTTCCCATGTGTGATCAGAGCTTGTGGTGAAACTGCGGAGGATTCGGAGGTTGAGAAGATTCATGGGTTGTTGTTTAAA CTTGGATTGGAATTGGATGTGTATGTTGGCAGTGCTCTGGTTAATACTTATTTAAAGTTTGGGTTGGTGGAGGAAGCGCA TGAGGTGTTTGAGGAATTGCCTGTTAGAGATGTGGTGCTTTGGAACTCAATGGTTAATGGGTATGCCCAGATTGGGCACT TTGAGGAGGCCCTGGTGGTGTTTAGGAGGATGAGGGAAAATGGGGTGGTTCCTTGTAGATATACAGTTACTGGTGTTTTG TCTATATATTCTGTGGTCGTGGACTTTGACAATGGACGAGCTGTTCATGGGTTTCTGACAAAAATGGGTTATGCCTCAAG TGTTGTTGTTTCAAATGCACTGATTGATATGTATGGGAAGTGCAAGTGTACTAGTGATGCCTTGAATGTATTTGAGGTGA TGGATGAGAAAGATATCTTCTCATGGAACTCGATAATGTATGTTCATCAACGGTGCGGTGATCATTATGGAACTTTGAGG CTTTTTGATAGGATGCTAGGAAACAGGATTCAGCCCGATTTGGTTACAGTCACAACAGTACTGCCAGCCTGTACTCATCT AGCGGCCCTGATGCATGGCAGAGAGATACATGGGTATATGATTGTAAATGGATTGGGGAAGGAAGGGAGAAACAGTGATT TTGATGATGTTATATTGAGCAATGCTTTGATGGACATGTATGCGAAATGCGGAAACATGAGAGATGCTCGCATGGTTTTT GATAATATGGGAGAGAAAGACATGGCCTCATGGAACATCATGATCACGGGTTATGGAATGCACGGTTATGGCGATGAGGC ATTGGATACGTTTTCTCGAATGTGTCAAGCTCGTATGGTACCTAATGAAATCAGTTTTGTTGGATTGTTATCTGCGTGCA GCCATGCTGGCATGGTAAAGGAGGGGCTTGAGTTTCTTGCAGAAATGCAGTCAAAATATGGTGTTACACCATCTATTGAA CACTACACCTGTGTGATTGACATGCTTTGTCGAGCCGGGCAGCTCGTGGAGGCTTATGATTTATTTCTAACAATGCCCTT TAAGGCTGATCCGGTAGGATGGAGATCTTTGCTAGCGGCATGCCGTCTCCACAAGGACACAGACTTGGCTGAGATTGCTG CAAGTAAGGTGATTGAACTTGAGCCAGGTCACTGTGGAAATTATGTGCTAATGTCAAATGTTTATGGAGTGGATGGTCGA TATGAAGAAGTATCAGAGTTGAGGCACACAATGAGGCAACAAAATGTGAAGAAAAGACCGGGATGTAGCTGGATTGAACT CATGAATGGTGTGCATGTTTTTATAACGGGTGATAGGACTCATCCCCAAACCAACTTTATTTATGCTGGTTTAAATTCAT TGACAGCAGTTCTGCAAGAGTATGGATATGTACCATTTATCTAG
CDS sequence (LotjaGi4g1v0025300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCCAAGTGTACCCTCATGGACCATGCCCTTAAAGTTTTCAACTACCCCACCCATCATGACAAAAATGTCTTTGC CTACAATGCAATCATTGCCGGATTCGTAGCAAACAGGCTTTCCCGAGATGGGTTTGGTCTTTATAGGCAAATGCGGCATC TGGGTGTTGTTCCTGATAAGTTCACTTTCCCATGTGTGATCAGAGCTTGTGGTGAAACTGCGGAGGATTCGGAGGTTGAG AAGATTCATGGGTTGTTGTTTAAACTTGGATTGGAATTGGATGTGTATGTTGGCAGTGCTCTGGTTAATACTTATTTAAA GTTTGGGTTGGTGGAGGAAGCGCATGAGGTGTTTGAGGAATTGCCTGTTAGAGATGTGGTGCTTTGGAACTCAATGGTTA ATGGGTATGCCCAGATTGGGCACTTTGAGGAGGCCCTGGTGGTGTTTAGGAGGATGAGGGAAAATGGGGTGGTTCCTTGT AGATATACAGTTACTGGTGTTTTGTCTATATATTCTGTGGTCGTGGACTTTGACAATGGACGAGCTGTTCATGGGTTTCT GACAAAAATGGGTTATGCCTCAAGTGTTGTTGTTTCAAATGCACTGATTGATATGTATGGGAAGTGCAAGTGTACTAGTG ATGCCTTGAATGTATTTGAGGTGATGGATGAGAAAGATATCTTCTCATGGAACTCGATAATGTATGTTCATCAACGGTGC GGTGATCATTATGGAACTTTGAGGCTTTTTGATAGGATGCTAGGAAACAGGATTCAGCCCGATTTGGTTACAGTCACAAC AGTACTGCCAGCCTGTACTCATCTAGCGGCCCTGATGCATGGCAGAGAGATACATGGGTATATGATTGTAAATGGATTGG GGAAGGAAGGGAGAAACAGTGATTTTGATGATGTTATATTGAGCAATGCTTTGATGGACATGTATGCGAAATGCGGAAAC ATGAGAGATGCTCGCATGGTTTTTGATAATATGGGAGAGAAAGACATGGCCTCATGGAACATCATGATCACGGGTTATGG AATGCACGGTTATGGCGATGAGGCATTGGATACGTTTTCTCGAATGTGTCAAGCTCGTATGGTACCTAATGAAATCAGTT TTGTTGGATTGTTATCTGCGTGCAGCCATGCTGGCATGGTAAAGGAGGGGCTTGAGTTTCTTGCAGAAATGCAGTCAAAA TATGGTGTTACACCATCTATTGAACACTACACCTGTGTGATTGACATGCTTTGTCGAGCCGGGCAGCTCGTGGAGGCTTA TGATTTATTTCTAACAATGCCCTTTAAGGCTGATCCGGTAGGATGGAGATCTTTGCTAGCGGCATGCCGTCTCCACAAGG ACACAGACTTGGCTGAGATTGCTGCAAGTAAGGTGATTGAACTTGAGCCAGGTCACTGTGGAAATTATGTGCTAATGTCA AATGTTTATGGAGTGGATGGTCGATATGAAGAAGTATCAGAGTTGAGGCACACAATGAGGCAACAAAATGTGAAGAAAAG ACCGGGATGTAGCTGGATTGAACTCATGAATGGTGTGCATGTTTTTATAACGGGTGATAGGACTCATCCCCAAACCAACT TTATTTATGCTGGTTTAAATTCATTGACAGCAGTTCTGCAAGAGTATGGATATGTACCATTTATCTAG
Protein sequence (LotjaGi4g1v0025300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSKCTLMDHALKVFNYPTHHDKNVFAYNAIIAGFVANRLSRDGFGLYRQMRHLGVVPDKFTFPCVIRACGETAEDSEVE KIHGLLFKLGLELDVYVGSALVNTYLKFGLVEEAHEVFEELPVRDVVLWNSMVNGYAQIGHFEEALVVFRRMRENGVVPC RYTVTGVLSIYSVVVDFDNGRAVHGFLTKMGYASSVVVSNALIDMYGKCKCTSDALNVFEVMDEKDIFSWNSIMYVHQRC GDHYGTLRLFDRMLGNRIQPDLVTVTTVLPACTHLAALMHGREIHGYMIVNGLGKEGRNSDFDDVILSNALMDMYAKCGN MRDARMVFDNMGEKDMASWNIMITGYGMHGYGDEALDTFSRMCQARMVPNEISFVGLLSACSHAGMVKEGLEFLAEMQSK YGVTPSIEHYTCVIDMLCRAGQLVEAYDLFLTMPFKADPVGWRSLLAACRLHKDTDLAEIAASKVIELEPGHCGNYVLMS NVYGVDGRYEEVSELRHTMRQQNVKKRPGCSWIELMNGVHVFITGDRTHPQTNFIYAGLNSLTAVLQEYGYVPFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 72 | 72 | 2.2E-113 | – | |
| Gene3D | 1 | 81 | 81 | 5.0E-12 | ||
| Pfam | 23 | 70 | 48 | 2.4E-10 | ||
| ProSiteProfiles | 24 | 58 | 35 | 10.402 | ||
| TIGRFAM | 27 | 59 | 33 | 1.5E-5 | ||
| ProSiteProfiles | 59 | 93 | 35 | 6.785 | ||
| PANTHER | 81 | 180 | 100 | 2.2E-113 | – | |
| Gene3D | 82 | 155 | 74 | 1.6E-10 | ||
| ProSiteProfiles | 94 | 124 | 31 | 7.783 | ||
| Pfam | 100 | 123 | 24 | 0.037 | ||
| SUPERFAMILY | 103 | 491 | 389 | 7.03E-6 | ||
| Pfam | 125 | 168 | 44 | 1.6E-9 | ||
| ProSiteProfiles | 125 | 159 | 35 | 14.228 | ||
| TIGRFAM | 127 | 159 | 33 | 1.6E-9 | ||
| Gene3D | 176 | 281 | 106 | 1.1E-18 | ||
| PANTHER | 179 | 292 | 114 | 2.2E-113 | – | |
| ProSiteProfiles | 195 | 225 | 31 | 7.75 | ||
| Pfam | 199 | 227 | 29 | 0.0018 | ||
| ProSiteProfiles | 226 | 260 | 35 | 9.668 | ||
| Pfam | 228 | 257 | 30 | 0.22 | ||
| TIGRFAM | 228 | 261 | 34 | 0.0026 | ||
| ProSiteProfiles | 261 | 295 | 35 | 5.579 | ||
| PANTHER | 280 | 500 | 221 | 2.2E-113 | – | |
| Gene3D | 282 | 400 | 119 | 5.6E-25 | ||
| ProSiteProfiles | 304 | 334 | 31 | 8.977 | ||
| TIGRFAM | 309 | 335 | 27 | 0.0013 | ||
| Pfam | 334 | 382 | 49 | 9.0E-8 | ||
| ProSiteProfiles | 335 | 369 | 35 | 10.775 | ||
| TIGRFAM | 338 | 371 | 34 | 4.0E-7 | ||
| ProSiteProfiles | 370 | 405 | 36 | 8.506 | ||
| TIGRFAM | 373 | 406 | 34 | 3.0E-4 | ||
| Gene3D | 401 | 524 | 124 | 6.3E-13 | ||
| Pfam | 402 | 433 | 32 | 3.9E-6 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.188 | ||
| TIGRFAM | 410 | 433 | 24 | 3.9E-4 | ||
| ProSiteProfiles | 472 | 506 | 35 | 6.39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0025300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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