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LotjaGi4g1v0028100.1

Overview

Field Value
Gene ID LotjaGi4g1v0028100
Transcript ID LotjaGi4g1v0028100.1
Lotus japonicus genome version Gifu v1.2
Description Receptor-like kinase; TAIR: AT4G20790.1 Leucine-rich repeat protein kinase family protein; Swiss-Prot: sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950; TrEMBL-Plants: tr|G8A1C2|G8A1C2_MEDTR Receptor-like kinase; Found in the gene: LotjaGi4g1v0028100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:3503066..3505155) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGTTCCAATAATTTTATCTTCATGCCACACAACATTATGTGCAACAGTGGTGGAAGATCTCAAAAACTTGCACCACC CCCCAGATTTCAACACTACAATCATGAGCAACTGTCTCAAGAACCCATCTCTTAGATACTGCAGTTCCAACCCCATGGAC CTTGATGAAATATTCAAATACACTATTGTTGCTAGCCATTTATGCAATGAGTCAAAGAACCCCAATTGTGTTGAAACATT CCCCAAAGTTGATCTCAGAAACCGCCCGAATATCGCGCCTCTTTACTTGTCATTCAGTTTCTTTTGGAAGTACTGTCCCT TGACCATTCTCTCCATTGATTTGTCCAACAACTCCATGAAGGGTGGTTTTCCAATTGATGTTCTCAACTGCACTCAAATC CATTCTCTTGACTTAAGTTTCAATCAACTTTCTGGTGACATTCCAATTGAAAGTTTCTCTCCCCTTACCAACCTCACCTT TCTGAACCTCTCCTATAATTGCTTTTCAGAGAGTGAATTATCAAATTCCCAATTCTTCAAAAGGTTTAATGCTTCTAGTT TTCTTCATTCTGGTGCTGTCCCAGATCACAAAAGGTTCACAGTGAAAATAATCATTCTACTAGTTGGTTTTCCCATCTTT GTTGTTTTGATGGTGATTTTCTTTGGATGGCTTTGTTTCCAAAGGCCTGATTTTCTACCAAGAGCATTTAAAAGAAGTAG GAGGTTTACACCAGCAATTCTGAAAGCAATTACTTCTGGTTTTTCGAATCAAAATTTGGTGGGGAAGAGTGATGTTGTTC ACATATACAAAGGGATCTTGAGAGATGGTACTGAAGTGAAGATTGAGATGTACTTTGATGACATGTCAAGGGAAAGATAT AAAGAATTTGTTGAAGAGTGTAAGGTTCTGTGTGAGCTGGACCACAAGAACATTGTTAGAGTTATAGGATGGTGCAGAAG CAGGAAATTCAGGGCTATTGTTACAGATTGGACAGAAGAAGAAAATATTGAAATGTGGTTATCAGGGTCTGCTCCACCAT GGAATCATAGGCTGAAAGTGTTGATGGGAGTTGTGGAATGCATGCTCTATCTGCAGGAGGAATGGCCTGAAGTTGACTAT GAACTCAAGACAAGTAGTGTTTTAGTATCGGAGTATTTGGAACCATTAATTTCAAGGTTCAAAGTTGAAGAGCAAAACAG CAGTAGAAGGAGTAAGAATAATGAATGACTGAATAGTCACTTTAATCCGTGAAAGATATAAGGTCTATCAATTTTGTTCC TCTGCAAAGAAAATAGGCAAAATAGTCCCTGAAAGAGATAAAATCAAATTTCAATTTAGTCGTTTAGGAATTAAAATGAG ATGACTTTTTTCATTTCTTAAAGATTATATTGATCGTGATTTTCATTTTTTAAGGATTCAATTGATCGTTTTTTAACTTT CAGTGACTATTTTGCTTATTTTCATCCATCAAGGATTAAGTTGACCGACTTCGTATCTTTCAAGAGCAAAAATGACAATT TACTCATGAATTATGAGCATACACAATCAAGATTTATTCCTTTATGGTGTCTTATCTTTTTTGTAGTATCAATGATTTGT TTGGTGAATGATACTTTCTTTTATATTGTAGAGATATGCAAGTTTGGGGTGTTTCTTCTAGAGATGATGATAATCAGGAG GGATCAAGAGGAGTTTGATGGTGGTGATGCTGGATTCATTAGGTTCATAAGAACCCTTCATCCTGAAGACTTGTATGAGA TGATTGATGAGAGAATGGAAGTTACTGAAACAACTTTAAATCAAGTTAAACAGGTGCTATCCCTTGGACTAATGTGCATA GCCATAGACCAATCAAACAGTGAACAACCAAGTTTAGCCCAGATATTTAATACTCTATCAAGAGCCTACAACGCAAATCA AAAAGTATTTCATGGAGATAGAGTTAAGGGACACAAGCACATTCAATTCAGATAAGTACCAGTGGGTGATTTTCTTCAGA ATTAGTACCAGTTTTGTCACTGTTCCTACTTCTGATATGTGATTTCGATTGTACTTCAGTGTTAAGGCATACATTGTACT ATAATTGCAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0028100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAACTGTCTCAAGAACCCATCTCTTAGATACTGCAGTTCCAACCCCATGGACCTTGATGAAATATTCAAATACAC TATTGTTGCTAGCCATTTATGCAATGAGTCAAAGAACCCCAATTGTGTTGAAACATTCCCCAAAGTTGATCTCAGAAACC GCCCGAATATCGCGCCTCTTTACTTGTCATTCAGTTTCTTTTGGAAGTACTGTCCCTTGACCATTCTCTCCATTGATTTG TCCAACAACTCCATGAAGGGTGGTTTTCCAATTGATGTTCTCAACTGCACTCAAATCCATTCTCTTGACTTAAGTTTCAA TCAACTTTCTGGTGACATTCCAATTGAAAGTTTCTCTCCCCTTACCAACCTCACCTTTCTGAACCTCTCCTATAATTGCT TTTCAGAGAGTGAATTATCAAATTCCCAATTCTTCAAAAGGTTTAATGCTTCTAGTTTTCTTCATTCTGGTGCTGTCCCA GATCACAAAAGGTTCACAGTGAAAATAATCATTCTACTAGTTGGTTTTCCCATCTTTGTTGTTTTGATGGTGATTTTCTT TGGATGGCTTTGTTTCCAAAGGCCTGATTTTCTACCAAGAGCATTTAAAAGAAGTAGGAGGTTTACACCAGCAATTCTGA AAGCAATTACTTCTGGTTTTTCGAATCAAAATTTGGTGGGGAAGAGTGATGTTGTTCACATATACAAAGGGATCTTGAGA GATGGTACTGAAGTGAAGATTGAGATGTACTTTGATGACATGTCAAGGGAAAGATATAAAGAATTTGTTGAAGAGTGTAA GGTTCTGTGTGAGCTGGACCACAAGAACATTGTTAGAGTTATAGGATGGTGCAGAAGCAGGAAATTCAGGGCTATTGTTA CAGATTGGACAGAAGAAGAAAATATTGAAATGTGGTTATCAGGGTCTGCTCCACCATGGAATCATAGGCTGAAAGTGTTG ATGGGAGTTGTGGAATGCATGCTCTATCTGCAGGAGGAATGGCCTGAAGTTGACTATGAACTCAAGACAAGTAGTGTTTT AGTATCGGAGTATTTGGAACCATTAATTTCAAGGTTCAAAGTTGAAGAGCAAAACAGCAGTAGAAGGAAGATATGCAAGT TTGGGGTGTTTCTTCTAGAGATGATGATAATCAGGAGGGATCAAGAGGAGTTTGATGGTGGTGATGCTGGATTCATTAGG TTCATAAGAACCCTTCATCCTGAAGACTTGTATGAGATGATTGATGAGAGAATGGAAGTTACTGAAACAACTTTAAATCA AGTTAAACAGGTGCTATCCCTTGGACTAATGTGCATAGCCATAGACCAATCAAACAGTGAACAACCAAGTTTAGCCCAGA TATTTAATACTCTATCAAGAGCCTACAACGCAAATCAAAAAGTATTTCATGGAGATAGAGTTAAGGGACACAAGCACATT CAATTCAGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0028100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNCLKNPSLRYCSSNPMDLDEIFKYTIVASHLCNESKNPNCVETFPKVDLRNRPNIAPLYLSFSFFWKYCPLTILSIDL SNNSMKGGFPIDVLNCTQIHSLDLSFNQLSGDIPIESFSPLTNLTFLNLSYNCFSESELSNSQFFKRFNASSFLHSGAVP DHKRFTVKIIILLVGFPIFVVLMVIFFGWLCFQRPDFLPRAFKRSRRFTPAILKAITSGFSNQNLVGKSDVVHIYKGILR DGTEVKIEMYFDDMSRERYKEFVEECKVLCELDHKNIVRVIGWCRSRKFRAIVTDWTEEENIEMWLSGSAPPWNHRLKVL MGVVECMLYLQEEWPEVDYELKTSSVLVSEYLEPLISRFKVEEQNSSRRKICKFGVFLLEMMIIRRDQEEFDGGDAGFIR FIRTLHPEDLYEMIDERMEVTETTLNQVKQVLSLGLMCIAIDQSNSEQPSLAQIFNTLSRAYNANQKVFHGDRVKGHKHI QFR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 168 168 - –
PANTHER
PTHR27000:SF555
2 456 455 3.7E-186 –
PANTHER
PTHR27000
2 456 455 3.7E-186 –
Gene3D
G3DSA:3.80.10.10
25 160 136 4.2E-16
IPR032675
SUPERFAMILY
SSF52058
32 166 135 1.87E-13 –
Phobius
TRANSMEMBRANE
169 190 22 - –
TMHMM
TMhelix
170 192 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
191 483 293 - –
SUPERFAMILY
SSF56112
199 458 260 4.39E-21
IPR011009
Gene3D
G3DSA:3.30.200.20
201 296 96 3.3E-19 –
ProSiteProfiles
PS50011
220 483 264 11.468
IPR000719
Pfam
PF07714
224 375 152 1.2E-11
IPR001245

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0028100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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