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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0029200 |
| Transcript ID | LotjaGi4g1v0029200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G62260.1 mitochondrial editing factor 9; Swiss-Prot: sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial; TrEMBL-Plants: tr|I1K2U6|I1K2U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3608604..3612616) extracted from Lotus japonicus Gifu genome v1.2.
CAACATTATACTCTCTTTGTCAAGTTTGATGACACTTCGAAATTTGGACAATGTCAACTTGTCTGATGAGACTGAGCAGG CTCCAACTACCTCGTACACTCTGTTCTCGTGGCTTGGCCTCGTTCCATAAAACCAACGACAACGAGTCCTCACTGCTTCA CCAATGGAACAAGAAGATATCGCATTTGATTCGAACTGGTAGACTAAGCGAAGCAAGGACCTTCTTCGATTCCATGAAGC ACCGCAACACCGTAACTTGGAACACCCTCATAAGTGGCCACGTGAAGCGGCGAGAGATTGCCAAGGCACGCCAACTGTTC GACGAAATGCCCCAAAGGGACATTGTTTCCTGGAACCTCATCATTTCGGGTTACTTTTCTTGCTGCGGAAGCAAGTTCGT GGAGGAAGGGAGGAAGCTGTTTGATGAAATGCCTGAGAGAGATTGTGTCTCTTGGAACACGGTTATAAGTGGGTATGCGA AGAATGGGAGGATGGATCAGGCTTTGAAGCTTTTCGATGCGATGCCTGAAAGGAATGCTGTGTCGTCGAATGCTGTGATC ACCGGGTTCTTGTTGAATGGTGATGTGGATTCGGCGGTTGGTTTTTTCAAGAGGATGCCGGAGTGTGACTCGGCTTCTCT TAGCGCGCTTATATCGGGGCTTGTTAGGAATGGTGAGTTGGATATGGCTGCTGGGATTCTGCTTGAATGTGGGGATGGGG ATGAAGGGAAACATGATTTGGTGCAAGCTTATAACACCTTGATCGCTGGCTATGGCCAGAGTGGCAAGGTGGAAGAAGCG CGACGTCTTTTTGATCGGATCCCGAATGATCAAGGTGATGGAAAGGAGGATGGAAGGAGATTCAGACGAAATGTAGTCTC ATGGAATTCGATGATGATGTGTTATGTTAAAGTGGGAGACATTGTTTCTGCTAGGGAACTCTTTGATAGCATGGGGGAGC GGGACACTTGTGCTTGGAACACCATGATTAGCGGCTATGTTCAAATCTCTGACATGGAAGAGGCCTCCAAGCTTTTCAAG GAAATGCCCAGTCCTGATGCACTTTCATGGAATTCAATAATATCTGGGTTTGCTCAGATTGGTGATTTGAAAGTTGCAAA AGATTTTTTTGAGAGGATGCCCCAGAAAAATCTGATCTCTTGGAACTCATTAATAGCTGGCTACGACAAAAATGAAGACT ATAAGGGTGCTATTGAGCTATTTTCTCAGATGCAACTTGAGGGAGAGAAGCCAGATAGACACACTTTATCTTCAGTTCTC AGTGTATGTACTGGGTTGGTGGATCTTTACCTCGGTAAGCAGATGCATCAGCTTGTCACAAAGACTGTTATTCCAGATTT ACCAATAAATAATTCCCTCATTACCATGTACTCGAGATGTGGGGCAATAGGTGAGGCATGCACTGTATTTAATGAGATGA AATTTTATAAAGACGTGATCACTTGGAATGCAATGATTGGAGGCTATGCATCCCATGGCTTAGCTGTGGACGCTCTGGAG CTTTTCAAACAGATGAAAAGGCTTAAAATTCACCCTACCTATATAACCTTCATTTCAGTTTTGAATGCATGCGCCCATGC AGGATTAGTTGAAGAAGGGAGGAGGCAATTCAATTCCATGATTAACGACTATGGTATTGAACCCCGGGTTGAGCACTTTG CTTCCTTTGTGGACATCTTGGGACGGCAAGGACAGCTTCAGGAAGCTATGGATTTGATAAATAGCATGCCGGTTAAACCA GATAAGGCTGTGTGGGGTGCATTACTAGGTTCTTGTAGAGTACATGGTAATGTAGAATTGGCCCAAGTAGCCGCCCAAGC TTTGATCAGTCTTGAACCAGAAAGTTCAGGTCCTTACGTGTTGTTATATAATATGTATGCTAACTTAGAACTATGGGATG ATGCTGAAAGAGTGAGAGTGTTGATGGAAGAAAAAAATGTCAAGAAACAAACAGGGTATAGTTGGGTAGATTCTTCCAAT CGCCAATGACAATTTTTCTGTTTTAGAAAGACTTCAATTGGCAACAGATATCATATCATGCCATTGTTAGAGATGCTCAC ATTCAACTTAACCTCATTAATATTGTCAGATGGGAAAGAAGAACGATCTTTACCAGTTAAGTAGATATTGACGTAAATGT TAGTTTGACCCGGAAGATATCGTACGTCTTCTGTCGAACATTCAGAGGTAAGAACATGTTTGTTTTTGAATATTCTTGTA TGGGTATAAATTTGCGGACTTGTAGCTTACATTACTGTCATAAATTTCACAAATAATTTCTTGTTTCTTTTAATAGGTTC ATTTGGCAGTATCAGCAATAAGTGATTTCAACCATGGATGGCTGGAATATTGGTATGGCACAAATCAATAATTCTTAATG ATTATACATACAAGTTAAGGCACTCCTCCATAGACTCTGAAGGAGGATACTAGACACCTTTTACATGTCCCTCCATGTAG TGAAGTGCGTTCATCCCTTTACGAAAGGCCGCACATTTCTCATCAGCATCACAAAGGGATCCAGAGAAAATATTTTGCAT TTAGGTATCTCCATTCCCATAATCAATGACATCTATAATCTCATTGTTTGATGAGACACCAAGACTAAAAAAAAGTCCAT ACAGGAACCTCAACACCCAAGAAATAAACACTGAGGACCTTCTCGCCGTTGTTAATTTCTTCAAACTTGGAATTTCCTAC AAGTTTAAGAATTAACATATTTCTCTTGTTCAGCGACTTGTGCCCAATTGCCCAATCTGGACTATTTGAAACCCAGAGCT TCTTCAGAAATTGTTGCTCCTGTGCAACAAAAGGCCTGAAACAATTTTTCACACAAATGACAAAACAATTTCACAACAGG AACAGGTAAAATTGAATAGGTTTCCAAATTCGTAACCTGTTTTCAGTGTTCATACAATGACTAGGTTTGAAAATCCTAGT CTGATTGGTTCTATCTACACAATGGCTGCTTTGGAAGGTGCTGTATACTTTTATGACATACAACTAGAGTGTGATATATC CCATATATAGCATGTCTTAACATTTTTCTTTTAAAAGTTGAATTTTTCATCATTATAGAAGTGGTCGTTATAAATTTGAC GCTGATATTGAGGGAATGAATAATGATGTTGATATTTGATCATAGCAGATTGTTATTGGATTCATATTATCATATCTTTG GTGTCCATGCCATCAATATGAGTGTTATTGTTTTGTGATGAATTATATGTTTGAGATATATATGATGGGGTATTTTGTGT GTATGGCATTCTTACACATTAAAAATAAAGTTATTTAAAATTATATCAGGTATCGAGTTGAGGTGGAAGTCTCTGATGGG GAGGATGTTGAGTATTTTATTTCATTTGAATCTGATGCTCAGTATCTCCTGAGGAAATCATGCCAGGAATTATTGGTGAT AGCTAATGTATGGAGTATATCATTATTCAGTCTTGTGTTTCTGTTTGATTGGGTTACAGCATGAAGTTGTTCCTGACTCA CTCGGTGACGATGGCCTTGTTCTGTTGACGACAGAGACAAACCCTATGAAGAGAGGGGCACATGAGGCGAAGGAATGTGC GAACGGTGTTGGGACGCCATTGAGGTTGAAAGAAGGTGAAAATTGAACTGGAATAATAATGTTATTGATGTGGTGAAATG GGCTGGGTGATTTATGGGGGTTTCCTTTTACTTTTTTGGAGCTTATCATTAAGAAGCTTGAAGATTGGGTTTGCTGCATT AGCGCATGTTTTTGGAGAACTGTTATTATATGTGTGTTTACTGTTTACACGTTCCAATGAATGCAAAAGAGAAAAACATG AATTGTGAGACTAACCAAGTGTGTACTGATGCTAGCTGATCATTTACCTAATTGATGTGTTATATTCTGGTTGTAGTGTA TTGTACTTTATGAATACATTTTTTTTTGGGTCAAATTAAGCAGCTCAACATATTCTGTAAATTGTTAAACCTCATTAGCC TGAAAAAAAGGCG
CDS sequence (LotjaGi4g1v0029200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTTGTCTGATGAGACTGAGCAGGCTCCAACTACCTCGTACACTCTGTTCTCGTGGCTTGGCCTCGTTCCATAA AACCAACGACAACGAGTCCTCACTGCTTCACCAATGGAACAAGAAGATATCGCATTTGATTCGAACTGGTAGACTAAGCG AAGCAAGGACCTTCTTCGATTCCATGAAGCACCGCAACACCGTAACTTGGAACACCCTCATAAGTGGCCACGTGAAGCGG CGAGAGATTGCCAAGGCACGCCAACTGTTCGACGAAATGCCCCAAAGGGACATTGTTTCCTGGAACCTCATCATTTCGGG TTACTTTTCTTGCTGCGGAAGCAAGTTCGTGGAGGAAGGGAGGAAGCTGTTTGATGAAATGCCTGAGAGAGATTGTGTCT CTTGGAACACGGTTATAAGTGGGTATGCGAAGAATGGGAGGATGGATCAGGCTTTGAAGCTTTTCGATGCGATGCCTGAA AGGAATGCTGTGTCGTCGAATGCTGTGATCACCGGGTTCTTGTTGAATGGTGATGTGGATTCGGCGGTTGGTTTTTTCAA GAGGATGCCGGAGTGTGACTCGGCTTCTCTTAGCGCGCTTATATCGGGGCTTGTTAGGAATGGTGAGTTGGATATGGCTG CTGGGATTCTGCTTGAATGTGGGGATGGGGATGAAGGGAAACATGATTTGGTGCAAGCTTATAACACCTTGATCGCTGGC TATGGCCAGAGTGGCAAGGTGGAAGAAGCGCGACGTCTTTTTGATCGGATCCCGAATGATCAAGGTGATGGAAAGGAGGA TGGAAGGAGATTCAGACGAAATGTAGTCTCATGGAATTCGATGATGATGTGTTATGTTAAAGTGGGAGACATTGTTTCTG CTAGGGAACTCTTTGATAGCATGGGGGAGCGGGACACTTGTGCTTGGAACACCATGATTAGCGGCTATGTTCAAATCTCT GACATGGAAGAGGCCTCCAAGCTTTTCAAGGAAATGCCCAGTCCTGATGCACTTTCATGGAATTCAATAATATCTGGGTT TGCTCAGATTGGTGATTTGAAAGTTGCAAAAGATTTTTTTGAGAGGATGCCCCAGAAAAATCTGATCTCTTGGAACTCAT TAATAGCTGGCTACGACAAAAATGAAGACTATAAGGGTGCTATTGAGCTATTTTCTCAGATGCAACTTGAGGGAGAGAAG CCAGATAGACACACTTTATCTTCAGTTCTCAGTGTATGTACTGGGTTGGTGGATCTTTACCTCGGTAAGCAGATGCATCA GCTTGTCACAAAGACTGTTATTCCAGATTTACCAATAAATAATTCCCTCATTACCATGTACTCGAGATGTGGGGCAATAG GTGAGGCATGCACTGTATTTAATGAGATGAAATTTTATAAAGACGTGATCACTTGGAATGCAATGATTGGAGGCTATGCA TCCCATGGCTTAGCTGTGGACGCTCTGGAGCTTTTCAAACAGATGAAAAGGCTTAAAATTCACCCTACCTATATAACCTT CATTTCAGTTTTGAATGCATGCGCCCATGCAGGATTAGTTGAAGAAGGGAGGAGGCAATTCAATTCCATGATTAACGACT ATGGTATTGAACCCCGGGTTGAGCACTTTGCTTCCTTTGTGGACATCTTGGGACGGCAAGGACAGCTTCAGGAAGCTATG GATTTGATAAATAGCATGCCGGTTAAACCAGATAAGGCTGTGTGGGGTGCATTACTAGGTTCTTGTAGAGTACATGGTAA TGTAGAATTGGCCCAAGTAGCCGCCCAAGCTTTGATCAGTCTTGAACCAGAAAGTTCAGGTCCTTACGTGTTGTTATATA ATATGTATGCTAACTTAGAACTATGGGATGATGCTGAAAGAGTGAGAGTGTTGATGGAAGAAAAAAATGTCAAGAAACAA ACAGGGTATAGTTGGGTAGATTCTTCCAATCGCCAATGA
Protein sequence (LotjaGi4g1v0029200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTCLMRLSRLQLPRTLCSRGLASFHKTNDNESSLLHQWNKKISHLIRTGRLSEARTFFDSMKHRNTVTWNTLISGHVKR REIAKARQLFDEMPQRDIVSWNLIISGYFSCCGSKFVEEGRKLFDEMPERDCVSWNTVISGYAKNGRMDQALKLFDAMPE RNAVSSNAVITGFLLNGDVDSAVGFFKRMPECDSASLSALISGLVRNGELDMAAGILLECGDGDEGKHDLVQAYNTLIAG YGQSGKVEEARRLFDRIPNDQGDGKEDGRRFRRNVVSWNSMMMCYVKVGDIVSARELFDSMGERDTCAWNTMISGYVQIS DMEEASKLFKEMPSPDALSWNSIISGFAQIGDLKVAKDFFERMPQKNLISWNSLIAGYDKNEDYKGAIELFSQMQLEGEK PDRHTLSSVLSVCTGLVDLYLGKQMHQLVTKTVIPDLPINNSLITMYSRCGAIGEACTVFNEMKFYKDVITWNAMIGGYA SHGLAVDALELFKQMKRLKIHPTYITFISVLNACAHAGLVEEGRRQFNSMINDYGIEPRVEHFASFVDILGRQGQLQEAM DLINSMPVKPDKAVWGALLGSCRVHGNVELAQVAAQALISLEPESSGPYVLLYNMYANLELWDDAERVRVLMEEKNVKKQ TGYSWVDSSNRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 35 | 65 | 31 | 6.818 | ||
| Gene3D | 37 | 228 | 192 | 1.4E-37 | ||
| SUPERFAMILY | 37 | 194 | 158 | 8.06E-5 | ||
| PANTHER | 39 | 127 | 89 | 6.8E-118 | – | |
| Pfam | 66 | 97 | 32 | 3.1E-8 | ||
| ProSiteProfiles | 66 | 100 | 35 | 11.531 | ||
| TIGRFAM | 68 | 99 | 32 | 3.1E-8 | ||
| ProSiteProfiles | 101 | 130 | 30 | 5.744 | ||
| Pfam | 130 | 158 | 29 | 1.2E-9 | ||
| ProSiteProfiles | 131 | 165 | 35 | 12.441 | ||
| TIGRFAM | 133 | 162 | 30 | 1.7E-8 | ||
| PANTHER | 133 | 214 | 82 | 6.8E-118 | – | |
| Pfam | 164 | 192 | 29 | 0.0014 | ||
| ProSiteProfiles | 193 | 223 | 31 | 6.38 | ||
| Pfam | 197 | 218 | 22 | 0.2 | ||
| SUPERFAMILY | 223 | 393 | 171 | 1.65E-6 | – | |
| Gene3D | 229 | 333 | 105 | 1.4E-23 | ||
| ProSiteProfiles | 230 | 260 | 31 | 9.383 | ||
| PANTHER | 232 | 363 | 132 | 6.8E-118 | – | |
| TIGRFAM | 233 | 257 | 25 | 5.8E-6 | ||
| Pfam | 233 | 257 | 25 | 1.9E-6 | ||
| ProSiteProfiles | 274 | 308 | 35 | 10.194 | ||
| TIGRFAM | 276 | 305 | 30 | 4.5E-6 | ||
| Pfam | 276 | 304 | 29 | 1.7E-6 | ||
| TIGRFAM | 308 | 332 | 25 | 3.3E-6 | ||
| Pfam | 308 | 333 | 26 | 2.1E-7 | ||
| ProSiteProfiles | 309 | 335 | 27 | 6.982 | ||
| Gene3D | 334 | 433 | 100 | 2.7E-19 | ||
| Pfam | 334 | 363 | 30 | 2.6E-5 | ||
| ProSiteProfiles | 336 | 366 | 31 | 9.865 | ||
| TIGRFAM | 339 | 366 | 28 | 2.7E-4 | ||
| PANTHER | 341 | 418 | 78 | 6.8E-118 | – | |
| Pfam | 366 | 413 | 48 | 7.0E-10 | ||
| ProSiteProfiles | 367 | 401 | 35 | 11.159 | ||
| TIGRFAM | 369 | 402 | 34 | 2.4E-5 | ||
| PANTHER | 421 | 632 | 212 | 6.8E-118 | – | |
| ProSiteProfiles | 436 | 466 | 31 | 7.541 | ||
| Gene3D | 441 | 650 | 210 | 2.5E-38 | ||
| Pfam | 441 | 464 | 24 | 0.0031 | ||
| Pfam | 467 | 515 | 49 | 9.0E-12 | ||
| ProSiteProfiles | 468 | 502 | 35 | 12.595 | ||
| TIGRFAM | 470 | 503 | 34 | 8.7E-8 | ||
| ProSiteProfiles | 503 | 538 | 36 | 8.133 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.566 | ||
| Pfam | 545 | 567 | 23 | 0.76 | ||
| ProSiteProfiles | 605 | 639 | 35 | 6.939 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0029200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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