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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0040000 |
| Transcript ID | LotjaGi4g1v0040000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding KH domain protein; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|I1KL57|I1KL57_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4736638..4743376) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGTTTGAACTATATTAATTATTTTTTTCCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTA TTCTCTCTCTTTCCCACTTTCCAACATGAATAACAAAGGGTAATTTTGGAAGTTTATTTTGATTCAAGACAAATTTAATG CATTTTATCTAGTTTTACTACATTTCTTAAACTATGTGAATTTTTTTTTTTGTTGCTTATAAATAGGACCGGAGGGAGTA TATAATAATTATATATTTTGTGGTTAAAAGCAATTTCCCCTCTTCTCCACCAAGAAACCAAAGAAACCTTACTACACTCC CTCCTACTTGGATGGCCGACCCGACCCACTTTAACGGACCCTCCAACGGGCCAACCCAGGTCACCTTCCGCCTGCTCTGC CACGCTTCACGCGTCGGCAGCCTCATCGGAAAAGCCGGCGTCGTCATCAAGTCCCTCCAGCAAGCCACGGCGGCCAGAAT CCGAATTGACGACGCCCCGCCCGATTCCCCCGACCGGGTCATCCGTATCATCTCCAAGCTCGACGGCGGCGAGGCGCTGC TCCGGGTCTTTGAGAAGGTGCTTGATGTCGCCGCCGAGGCTGACGAGTTTGACGTCCTGGATAGGGTGGTTTGCTGCCGG CTGCTGTCGGACCCTGCCCAGGTCGGCGCCGTCATCGGCAAGGGAGGGAAGGTGGTGGAGAAGATTAGGGCGGAGACTGG TTGTAAGATTAGGGTTTTCAGTGACAAGTTGCCTGCTGGTACTAAACCCTCAGATGAAATCATTGAGGTATTTCACTCTT GTTCCCTTTGCTCTTATCTATGTTTTCTTGCACAATGCATTAGGTAGTGATAGTAGTCATTAGGGTTGTTAATGGCGGAT AGCGTAGCGTAGTGGCAAGCCCAAAAACGCTATTTCGAGAGCTATTGTGGTGCTATAGTGGCTAATAGCGGTGAACTTCC AGGGCGCTATATGCTATAGCGCGCTATTAACAGGCCTGGGTAAAACATCATTGGTTTTGGATTTGATAAGTTGGTTGAAT AGATAAAGCATTGATTTTCAATTTATGTATGGAAATACAGTAAATGGGCCTCAATTTATCTATGCTGTCTATATTGATTT TTTCTTTGTATGCCGAGAGAAGATTTTTTTTGTCAGATTCAAGGTAAGGTGATAGTTTCAGTTTGCATTGTAGTTATCAC TTATCAGGGGTTGGCGAAACATCATTTGGATTGGATGTATGGGTTGAATAGGTAAAGAATGGATTTTCCAATTGAGCTAT AGACATACAGTAAATGCACTTCAATTTATGTATGCTATCCATCTTCATTTTTTCTTTTTATTCTGAGAGAAGATCTTTAT TGTCATACAATCAAAGGTGATAGATAGTATCAGAATGCAATGTAGTCATTATTAGGCTTTGGCAAAACATCATTGGTTTT GGATTGGATGTATTGGTTGGATGATAAAGCACTGATTTTCCAGTTTATCTATAGACACAGTAAATGCACTTCAATTTATG TATGATTTTCCATTTTCATTTATTCTGAGAAAAGATCTTTATTGTCAGCTACAAGCAAAGGGGATAGACAGTATCGGAAT GCATTGGTTTTGGATTTGATGTATTGGTTGAATAGATAAAGCATTGATTTTTTTAATTTATCTATAGACATACTGTAAAT GCACTTCAATTTATATATGCTATCTATTTGTATTTTTTCTTTTTATGCTGAGATAAGATCTTTATTGTCAGATACAAGGT AAGGTGTCATCTGTGAAGAAGGCCCTTGTGGCTGTTGCTAGCCGGATTGAAGAATGTCTTCCATTTGATAGAACGAAGAC GACGGCAAGCAGACCTTATGAAGGGTTTCAGCATGGAACTTTTGATGTTCCAACAGAAACTTGCACAGATAAGCACATAG ATCACAGACAGCAGAAGAGCTCTACTTTGCCTGATTTATCGAGTAGGTATAATGGCAATGCCTATGGAGTTAACTCATTG TCAGCTGAAGTCAACAGAGTCTCGGCCCTTGATCCAAGAGCACTTCAGAAGGAAGTTACCTTTAGAATTCTTTGTTCAAA TGATAGAGTTGGTGCTGTAATTGGAAAGGGTGGTAGTACTATACGAGCTCTTCAGAATGAAACAGGGGCTAATATAAGTA TTGCTCCCCCAGTAGTTGAGTGTGAGGATCGATTAATTACTATTACTGCTTTAGAGGTTTGTTGAATATACTATTTTTGC TTTGACTTCTGTTCTGGGTCTTAATGTTCTTTTATGTGCATAATTATCAGTATTGTTCCGATTTATTTTTCTTTTAATGG TGGCTTCTTTTTCGGCAGAATCCTGAATCAAGGTATCCCTCTCCAGCACAGAAGGCTGTTGTGCTTGTTTTCTCTAGGTC TGTTGAGGCTGGTTTTGACAGGGGGGTAGACTTTGGATCCAAAAAGGAGTCATCTGTTACTGCTCGACTTGTAATACAAT CCAACCAAGTAGGTTGTTTAATAGGGAAAGGGGGAGCAATAGTCTCAGAAATGCGGAAGGCCACAGGGACTATGATAAGA GTAATTGCGAACAACCAGTTTCCAAAGTGTACAACAGATAATGATCAATTGGTACAGGTATGGAGATGATTTGTTATTTA GCTAACAATCAAAATATACTCAGGATTTTTTTAGCAACTAATTATTTTGTGTCTGCTGCAAGTGGAAGAAACCTTTTCAC CCTTACTCGTTTTTTGTGCATTTGTGCTACCTTAGTGGTGCCAGCTACACCATTTCTCTTTTCTATAAAAACTCTCAACC TTTTTATCATGTTATACTTGAAATCATAAGGTGATTAATGACTCATCTCTCATCATGGTATGTTCTAAAAAACATATTTG TTTTTCCTGTGTGTATGAATTTAGTCCCATTTTTGATTATTTCTTGATTTTCTCTCTTTCAACTCGGATTGGGGTAAGGG GAAATGGAAAATAACAGTGTGCCTTGAGAGTAAATGCGCAACAATGTCGGCAGGCTACTGCCTGGAGAATGAAATTGGTC TTGCTAGTTAGAGATACTCTTCAATAAGATATGTTTGAGCCAGTGTCTGTTTTCTATAATCTAGAATAATATTGTTTTTG ACTGACACCTCCTGCACAAGCTTGAAGCCATCTCTGGCTTTTTCTGATGAATATATACTGCTTATCAGGTTTGCTGTTAC GGAAAGAAGTTTTTAGATTCCTTGCTTAATTTTCAGTATATTTTTGTACTTGTAGTCGTATGTCTAAAAATGTAATTTGT TCATCCCTCAAACAATACATGTTCCCTTCTGATAATTGAAATATTAGCCATATTTCGCTCTTTTATACTGAGTAAGACTT TTATTCTAGAGTCGGCGCTGTTCATTCTTCATATCTCATAGACGTGTAATACTGTCTTTATTTTTCTTTTCTCCTTAGAT ATCAGGACAGTTCTTAAATGTTCAAGATGCATTATATAATGCTACTGGCAGACTGCGAGATAATCTTTTTGTCAGCACAC AAAACAACGGTGGATCAAAGAGCCTTTCCTCTCACAGTCTCAGATCCTTGTCTCAAAGTATGGATCATCTTTCACTTTCT CAAAATTCAAATCATCCTTCTTCACCATGGTCATGGACACCAAAGGTATATCGCTTTTGTCTCTGTTGGCTGGTTTTCCT TTCCAAATTTTCCTTTTTTTTAATGATTAAACTTTATTGCAGTCAGCGGGCGCGATAAATTCTAGAGGCAGCAATGATGT TGGCAGGGGATTGACTCCTCAAAACGGTGACCTAGAGCTTGTCAGGTTGATGATATGCAAACTCAATTTACCCTTTTGCT TAAATGGAAATAGTCATGTGAGCGTATATAACATGTCACAAACTGTCAAATTCTTATTGTACTCTTTTTCCGTCTGCAGT GGGAGTAAAACCGCCATTGTGAGTAAAACTGCCATTGTGACTAATACAACCGTGGAGATTATGGTTTCCAATGATATCAT TGACTCTGTTTACGGAGAAGATGGTGGCAACCTAGATCGATTGAAACAGGTACTAATCTTAATTTTTGTTCGGACATGCA GCATTGTTATTAACAAAAGCACAGGGATTGGTTACAAACGTATTGTGAAAGACACTTCATAACCCTTTTTAACTTAATCT GTTCTTGTTATCAGATATCTGGTGCTAAGGTTACCGTTCATGAACCTCTTCCTGGGGCAAGCACCAGGGCTATTGTTATA TCCGGCACACCTGATGAAACTCAAGCAGCCCAGAGCCTTCTCCAAGCATTTATTCTCAACGGATCATGACTATACTTCTT CACTAATGACATAAATTTTCATCTTGTTTTCCTTTGTACTTATGTATCTGATAATCTTTTTTCTTTAGATTATCCTTTTT GACCTCACCTGAAAGTGTACAGGCCTTTTATTTTTCCATGCCATTAATCTCTTGCTAAACCAATTCAATAAAGCAAATTG TTTCAATGAATAAAGTTTGCTTCTTTTATAGCATGTTTGGATCAGCTTTTTCCTTCAGAATCAATTAATCGCATAAGCTA CTCACAGGTGCTTCTGCCTATAATTAATTCTAGGTCCATAAATCAATTGTAGAAGGGTTTCCGAACACGCACTTGGAAAT ATTAACTTGTTAAGAATGTCATGTCTTAACTCAATTAATGATGTGGTCGCTTTAAGTACCTCACATTCATTTTTCCTTGA TGAGCATATGCGAAACCAATGTTGTCAAATAGCGGTTATAGCAGCGCTATAGTGTAGTGCTCTGAGGGCTCGCTGCTATT TTTTGCTATGAGAGGTTGAAATAGTGGAGTTTTGGCTTTCCGTTATTTTCTGCGATCCGTGATTAACAACACTGTGAACC ACTGAATTAGTTTGATTGTTTGCATCTGGTAATGAGGCTCTATCTGTTATCAGTAAAAGCCATCAAGTTGATGCATCATT TTCAATGGTTATGGGGCTGCCTTGTAAGGGGATAGAAATACTGGTAATTATTTATCCTCCAAAACAAGGGAAATGAGACA ATCTGCATAAAGAAACAACACCTATAGGTGTTGGTTTTGCATTTTGCAACATATTTAAACACGTACCTCAAACCAAATGT TAATATGAGGACATACATATAATCTCCACACAGGACATATCAACAATCACATAAAATAGTATCATACCAGCCACAAAAAG CAAATTGGTGATTCAAGCAGCAAAGGATACTGTAGCCCATTCAGAATTTGTATCAGTTGACAGCTGCGGCGGGGGCGGCA GGTGAAGGATTAAGAGTGATTTCCACATTATCATGGACTCCTTGCAGAAGTAGCTCACCATCGTATGCCACTATTTTCCT CTTTTTAGCTGCTCTTAGTGTCCCAACAAGTGCTTCAAATATGTTTGCGCATCGATCATCATGAAATAGTGTTCCGAATG TAACCTTCACAGTACAAGGCATTTTGTTAAAATGAAGTGCTATACATTTTGGTGTACAAGATCAGCTAAACAAGTTCACC AGAAGATCAATATTCATCTAGTAATTATCCACATGTCTTTGCAGAAATGCTTCTTAGGATATTTCATCAGTATAGCAGAT TTTGGTACATATTACTAGCCGGCAACATTAGGGGCTTTTACTCACATTTGAGGAAAATCTGAGTAGTATATTCCCTCTCC ATTCCTTATTATTAAAGATCTCTCATGTCAGATAACATTATCATTATCATATACACTCATCTCTCTTTATATATGTTCAT TTCCAGACTTTTTTTGTTGTTTTGGATGAGTGTTCCTCCCAACAAATAACTTTGTCGAGATTTGAACTTGTCTTCATCCT TACAGGATTTAGCTTGTCTACAATTAGAATAACACATTCGTTGGTGTTCATTTCCTGACTATTTGATATATATGTAGAGA TTTACATAAATTTCAATATAGTAATGTCATATGAAAATTTCACTTTTAACATGAGATGATCCACATGGATCCTTCCATTC TTTCTATTCCATCCATTCAAATTTAAGCCCAGCCGGTTTAAATCCCAGTTTTTGCATGGAATCTTCTTGGTTCTACCTTT TAACATCATGGCAAATTTATGAAGTTGACATAACCAAAACTCAATTATCCTACCCTCTGTTTTTATTCCAAGGCTTAGGA GATAGGCTTAGACCAGAGCTGAATATAAAGATAAAATAAAATAAAGATCCAAGTTTGTGATTGGTCCAAGATCTGATAAC TGATATCATGATCTATAGATCTATAATAAGAGAATTATCACATTTAGCAAACACCATGTATTTGTACTTATATATCAATA TCATGATCTAGATAGATAGAGGGTGAAGAAATTGTGAGCATGAAATTCCATAAATATATATAGATCCAAAGCAACATTGA AAGATGAGTCATTTTGCTACACACCTTGTAAGAACCATCTGTTTGGACACTGCCAAGCCTGGTGATCTCTTCCTTGAGCC GCTGAACCTCTTCCTCTACATTCATGGCTGCAATATCTTCTTCTCCTCAGAATTGGACCACCAAAAGAAAAAAATAATAT TCCTTCGGTGAAGTTTCTATTCAGCGTGAAAGCGTTTTATATTTGGAGCTGTAGCTTTCACTTTGATAAAGTCATGTAGT AACTAATCATAAGAAAACGGTCCTTACTGCTTAAGGGATAGTAAAGACAATTTATTTATTATACAAAGACATTCTAAATC ATACGTTGTTATCTTAGAC
CDS sequence (LotjaGi4g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGACCCGACCCACTTTAACGGACCCTCCAACGGGCCAACCCAGGTCACCTTCCGCCTGCTCTGCCACGCTTCACG CGTCGGCAGCCTCATCGGAAAAGCCGGCGTCGTCATCAAGTCCCTCCAGCAAGCCACGGCGGCCAGAATCCGAATTGACG ACGCCCCGCCCGATTCCCCCGACCGGGTCATCCGTATCATCTCCAAGCTCGACGGCGGCGAGGCGCTGCTCCGGGTCTTT GAGAAGGTGCTTGATGTCGCCGCCGAGGCTGACGAGTTTGACGTCCTGGATAGGGTGGTTTGCTGCCGGCTGCTGTCGGA CCCTGCCCAGGTCGGCGCCGTCATCGGCAAGGGAGGGAAGGTGGTGGAGAAGATTAGGGCGGAGACTGGTTGTAAGATTA GGGTTTTCAGTGACAAGTTGCCTGCTGGTACTAAACCCTCAGATGAAATCATTGAGATACAAGGTAAGGTGTCATCTGTG AAGAAGGCCCTTGTGGCTGTTGCTAGCCGGATTGAAGAATGTCTTCCATTTGATAGAACGAAGACGACGGCAAGCAGACC TTATGAAGGGTTTCAGCATGGAACTTTTGATGTTCCAACAGAAACTTGCACAGATAAGCACATAGATCACAGACAGCAGA AGAGCTCTACTTTGCCTGATTTATCGAGTAGGTATAATGGCAATGCCTATGGAGTTAACTCATTGTCAGCTGAAGTCAAC AGAGTCTCGGCCCTTGATCCAAGAGCACTTCAGAAGGAAGTTACCTTTAGAATTCTTTGTTCAAATGATAGAGTTGGTGC TGTAATTGGAAAGGGTGGTAGTACTATACGAGCTCTTCAGAATGAAACAGGGGCTAATATAAGTATTGCTCCCCCAGTAG TTGAGTGTGAGGATCGATTAATTACTATTACTGCTTTAGAGAATCCTGAATCAAGGTATCCCTCTCCAGCACAGAAGGCT GTTGTGCTTGTTTTCTCTAGGTCTGTTGAGGCTGGTTTTGACAGGGGGGTAGACTTTGGATCCAAAAAGGAGTCATCTGT TACTGCTCGACTTGTAATACAATCCAACCAAGTAGGTTGTTTAATAGGGAAAGGGGGAGCAATAGTCTCAGAAATGCGGA AGGCCACAGGGACTATGATAAGAGTAATTGCGAACAACCAGTTTCCAAAGTGTACAACAGATAATGATCAATTGGTACAG ATATCAGGACAGTTCTTAAATGTTCAAGATGCATTATATAATGCTACTGGCAGACTGCGAGATAATCTTTTTGTCAGCAC ACAAAACAACGGTGGATCAAAGAGCCTTTCCTCTCACAGTCTCAGATCCTTGTCTCAAAGTATGGATCATCTTTCACTTT CTCAAAATTCAAATCATCCTTCTTCACCATGGTCATGGACACCAAAGTCAGCGGGCGCGATAAATTCTAGAGGCAGCAAT GATGTTGGCAGGGGATTGACTCCTCAAAACGGTGACCTAGAGCTTGTCAGTGGGAGTAAAACCGCCATTGTGAGTAAAAC TGCCATTGTGACTAATACAACCGTGGAGATTATGGTTTCCAATGATATCATTGACTCTGTTTACGGAGAAGATGGTGGCA ACCTAGATCGATTGAAACAGATATCTGGTGCTAAGGTTACCGTTCATGAACCTCTTCCTGGGGCAAGCACCAGGGCTATT GTTATATCCGGCACACCTGATGAAACTCAAGCAGCCCAGAGCCTTCTCCAAGCATTTATTCTCAACGGATCATGA
Protein sequence (LotjaGi4g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADPTHFNGPSNGPTQVTFRLLCHASRVGSLIGKAGVVIKSLQQATAARIRIDDAPPDSPDRVIRIISKLDGGEALLRVF EKVLDVAAEADEFDVLDRVVCCRLLSDPAQVGAVIGKGGKVVEKIRAETGCKIRVFSDKLPAGTKPSDEIIEIQGKVSSV KKALVAVASRIEECLPFDRTKTTASRPYEGFQHGTFDVPTETCTDKHIDHRQQKSSTLPDLSSRYNGNAYGVNSLSAEVN RVSALDPRALQKEVTFRILCSNDRVGAVIGKGGSTIRALQNETGANISIAPPVVECEDRLITITALENPESRYPSPAQKA VVLVFSRSVEAGFDRGVDFGSKKESSVTARLVIQSNQVGCLIGKGGAIVSEMRKATGTMIRVIANNQFPKCTTDNDQLVQ ISGQFLNVQDALYNATGRLRDNLFVSTQNNGGSKSLSSHSLRSLSQSMDHLSLSQNSNHPSSPWSWTPKSAGAINSRGSN DVGRGLTPQNGDLELVSGSKTAIVSKTAIVTNTTVEIMVSNDIIDSVYGEDGGNLDRLKQISGAKVTVHEPLPGASTRAI VISGTPDETQAAQSLLQAFILNGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 576 | 568 | 3.5E-241 | – | |
| PANTHER | 9 | 576 | 568 | 3.5E-241 | – | |
| SUPERFAMILY | 11 | 73 | 63 | 1.04E-12 | ||
| Gene3D | 14 | 87 | 74 | 4.4E-15 | ||
| SMART | 15 | 88 | 74 | 4.6E-9 | ||
| ProSiteProfiles | 16 | 83 | 68 | 12.349 | – | |
| Pfam | 18 | 68 | 51 | 3.6E-10 | ||
| CDD | 18 | 80 | 63 | 2.4532E-16 | – | |
| SUPERFAMILY | 98 | 178 | 81 | 1.9E-14 | ||
| SMART | 98 | 172 | 75 | 1.6E-12 | ||
| ProSiteProfiles | 99 | 167 | 69 | 13.774 | – | |
| Gene3D | 99 | 175 | 77 | 1.0E-15 | ||
| CDD | 102 | 168 | 67 | 5.10313E-17 | – | |
| Pfam | 104 | 167 | 64 | 1.1E-12 | ||
| SMART | 252 | 329 | 78 | 2.3E-11 | ||
| Gene3D | 252 | 421 | 170 | 3.7E-37 | – | |
| SUPERFAMILY | 253 | 327 | 75 | 3.8E-14 | ||
| ProSiteProfiles | 253 | 324 | 72 | 14.529 | – | |
| CDD | 255 | 325 | 71 | 1.84883E-16 | – | |
| Pfam | 255 | 305 | 51 | 1.2E-12 | ||
| SUPERFAMILY | 340 | 423 | 84 | 5.38E-14 | ||
| SMART | 345 | 420 | 76 | 6.1E-10 | ||
| ProSiteProfiles | 346 | 419 | 74 | 15.2 | – | |
| CDD | 348 | 413 | 66 | 2.62548E-15 | – | |
| Pfam | 349 | 412 | 64 | 3.8E-11 | ||
| MobiDBLite | 447 | 487 | 41 | - | – | |
| Gene3D | 509 | 583 | 75 | 5.3E-16 | ||
| SMART | 511 | 581 | 71 | 6.7E-4 | ||
| ProSiteProfiles | 512 | 576 | 65 | 14.34 | – | |
| SUPERFAMILY | 512 | 580 | 69 | 1.75E-12 | ||
| Pfam | 514 | 577 | 64 | 6.4E-8 | ||
| CDD | 514 | 577 | 64 | 7.44905E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0040000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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