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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0050100 |
| Transcript ID | LotjaGi4g1v0050100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT1G61290.1 syntaxin of plants 124; Swiss-Prot: sp|O64791|SY124_ARATH Syntaxin-124; TrEMBL-Plants: tr|G7ILD5|G7ILD5_MEDTR Syntaxin of plants 122 protein; Found in the gene: LotjaGi4g1v0050100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6082975..6084882) extracted from Lotus japonicus Gifu genome v1.2.
AAACACCCCTGTTTGATTAGTATCTAGTTAATTTGACTGGTCCTGGTTTCATAGTCACCAAAGGCCTCTATTGCCTCCAC CATTAGAAGAAAAAGGGCTTTTCTCTTTCAGAACCTCTTGTTGGTGACAATTACTTGTTTTTGTCACCTTCTAGCTTCCT CCTTGTTTTTCAATTCATCATAATCCAGAGGAGGATGAGGGCATATACCCCTCAATTTTTTTGTTACAGGAAGGAACATA CACATCCATCCCTTTGTTACACAACCATTAGTCCATTACATTTAGTCTTATGAGGTTTCTTCTGCTAGATTTTTAACCAT TACCAACTTCAGAAGGTACCAATTAACCAAGTTTTTTATCCATATTAAGATATCGGCAAGTTTTACGTGACTCGAAGGCC TAACACAACCCTCGTCCTCCAACAGAAGAAACAAATTAAGCAAAAAAAAATAGTAAAAAAAGAAAAGAAGGGGTTAGTCA ATTGTTCATTAAATCAGCCAAAATGAATGACCTGTTCTCAAGTTCCTTCAAGAAATACAGTGACTTGAAGCAGCAGGCCT ACCTTGATGATGTGGAGGCCGGGAAGGAGAGTGTCAATCTAGACAAATTCTTTGAAGATGTGGAGAGTGTTAAGGAAGAC ATGAGAACGATTGAGAAGCTCTACAGAAAACTGCAAGAATCCAATGAAGAGAGCAAGATTGTGCACAATGCTAAAACCAT GAAAGAGCTCCGAGCCCGGATGGACAACGACGTGTCGCAGGTCCTCAAACGCGTCAAGATCATCAAAGGCAAGCTCGAAG CCTTGGAGCGTTCCAACGCGGCAAACAGAAACGTCCCAGGGTGTGGTCCTGGTTCATCAGCAGACAGAACCAGGACCTCA GTGGTTAGTGGATTGGGGAAGAAACTCAAGGACATGATGGATGATTTTCAAGGTTTGAGAGCGAGAATGCAGCTCGAGTA CAAGGAAACCGTGGAACGCCGGTATTTCACAATCACAGGAGAGAAAGCAGATGAAGATACCATAGAGAATTTGATATCAA GTGGAGAAAGTGAAAGCTTCCTGCAGAGAGCAATTCAGGAACAAGGGAGGGGCCAGATTATGGACACCATTTCAGAAATT CAAGAAAGGCATGATGCTGTTAAGGAAATAGAGAAGAACTTGCTTGAATTGCATCAAGTGTTTTTGGACATGGCAGCATT AGTGGAGTCTCAGGGTCAGCAACTTAATAACATAGAGTCTCATGTTGCACATGCTAGCTCTTTTGTTAGGAGAGGCACAG ATCAGCTTCAGGAAGCAAGAGAGTACCAAAAGAGTTCTAGGAAGTGGTATTGCTATGCCGTTATTCTTGTCATTGTTCTT GTCATTGTGCTCCTGTTTCCTCTCTTGTCATCACTTCTACCTCATTTGTTGATGAGATGAAGAAATTAGACATGGAAGAA CACTCTTGAGACTTGAGAGCATTGTTTCCTTAACTTCTTGGTAGAACTTTGCATTCTGAAATGAACATGTTCATGTTCAT GCCTAGGATCAACAAGAGAATGGTGACAAATTGGGATTTGATGACCTCCTTGGTATTCAGGCATTTCATCAAATCCTGAT GAAGCAAAGGATCCACAAAATGTAACAAGGTTATTCTGATTTTGGTTTTTGGATTCTCAAAGATCTGTGATTGGAAGAGA ACAAGAGGAAACACATGTACATGACAATGTTATTGTAGTAGGTTTGACACATTTCGGAACGGATACACACATGTGATTTA GTTTCTTCTTTTCTTAGTTGTTCCTACCCTGTATGATTGTAAATTTGTAACGGTTGAAGAACTTGACATTGTTCAATCAT CGAGTGTTTTATGGTGAATTGGATTATACAGGGCAATTCGAAAGAATGCAATCATCCAATCAATCGGG
CDS sequence (LotjaGi4g1v0050100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGACCTGTTCTCAAGTTCCTTCAAGAAATACAGTGACTTGAAGCAGCAGGCCTACCTTGATGATGTGGAGGCCGG GAAGGAGAGTGTCAATCTAGACAAATTCTTTGAAGATGTGGAGAGTGTTAAGGAAGACATGAGAACGATTGAGAAGCTCT ACAGAAAACTGCAAGAATCCAATGAAGAGAGCAAGATTGTGCACAATGCTAAAACCATGAAAGAGCTCCGAGCCCGGATG GACAACGACGTGTCGCAGGTCCTCAAACGCGTCAAGATCATCAAAGGCAAGCTCGAAGCCTTGGAGCGTTCCAACGCGGC AAACAGAAACGTCCCAGGGTGTGGTCCTGGTTCATCAGCAGACAGAACCAGGACCTCAGTGGTTAGTGGATTGGGGAAGA AACTCAAGGACATGATGGATGATTTTCAAGGTTTGAGAGCGAGAATGCAGCTCGAGTACAAGGAAACCGTGGAACGCCGG TATTTCACAATCACAGGAGAGAAAGCAGATGAAGATACCATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGCTTCCT GCAGAGAGCAATTCAGGAACAAGGGAGGGGCCAGATTATGGACACCATTTCAGAAATTCAAGAAAGGCATGATGCTGTTA AGGAAATAGAGAAGAACTTGCTTGAATTGCATCAAGTGTTTTTGGACATGGCAGCATTAGTGGAGTCTCAGGGTCAGCAA CTTAATAACATAGAGTCTCATGTTGCACATGCTAGCTCTTTTGTTAGGAGAGGCACAGATCAGCTTCAGGAAGCAAGAGA GTACCAAAAGAGTTCTAGGAAGTGGTATTGCTATGCCGTTATTCTTGTCATTGTTCTTGTCATTGTGCTCCTGTTTCCTC TCTTGTCATCACTTCTACCTCATTTGTTGATGAGATGA
Protein sequence (LotjaGi4g1v0050100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDLFSSSFKKYSDLKQQAYLDDVEAGKESVNLDKFFEDVESVKEDMRTIEKLYRKLQESNEESKIVHNAKTMKELRARM DNDVSQVLKRVKIIKGKLEALERSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERR YFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQ LNNIESHVAHASSFVRRGTDQLQEAREYQKSSRKWYCYAVILVIVLVIVLLFPLLSSLLPHLLMR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 274 | 274 | - | – | |
| PANTHER | 7 | 299 | 293 | 7.0E-169 | – | |
| PANTHER | 7 | 299 | 293 | 7.0E-169 | – | |
| SMART | 28 | 154 | 127 | 5.0E-41 | ||
| Gene3D | 30 | 163 | 134 | 1.2E-26 | – | |
| SUPERFAMILY | 32 | 258 | 227 | 1.88E-48 | ||
| Pfam | 33 | 238 | 206 | 5.2E-74 | ||
| CDD | 33 | 190 | 158 | 1.19817E-41 | ||
| Coils | 40 | 63 | 24 | - | – | |
| Gene3D | 194 | 296 | 103 | 5.3E-32 | – | |
| SMART | 198 | 265 | 68 | 2.6E-18 | ||
| CDD | 202 | 264 | 63 | 1.44111E-23 | – | |
| ProSiteProfiles | 203 | 265 | 63 | 18.437 | ||
| ProSitePatterns | 209 | 248 | 40 | - | ||
| Pfam | 240 | 291 | 52 | 2.8E-17 | ||
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 275 | 295 | 21 | - | – | |
| Phobius | 296 | 305 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0050100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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