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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0054900 |
| Transcript ID | LotjaGi4g1v0054900.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|I3T4Q8|I3T4Q8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6635605..6637188) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACGTGGCGGCTTCCATGCGTAAGTCCTTCAAGGACTCATTGAAACTCCTTGAAGCTGATATTCACCATGCCAATAC CCTGTCAGTTCTCTCTCTCACTCTTTGCTTTCACTTTACTCCATCATTTTTTCTTTCTGAATTTAATGTAAAGGTGATCA CTTTTCCTCTATTGTTGTTAAATTTCTTCCTTTTTTATTTTGGGGTAATTTCTGAGTGAGAAATTTTTCTGGGTATGTTG ATTTTCTGTGATTTTTTTTTCTAATTTTTTTTTTTGATTGGCAAATTTTGGTTGGTAGTAATGTTTTTTGTTTTCATGTG TTTGCCTTTTTATCTTCTGGTCAGTGTTCATTTTTGGATTTTATTTCATGAATTGGGTGTATTTAGTTTGCTAAATTCAA TTAATTTTGCTGATAAAAGTGATTTTCAATGTTGATTTTCCACTGAGTATTGCTTATATGTGTGCTTGTGTGTGGTGGAG TTGTCAATTAGTTTAGGTAGGGTTGAATTCCCCTGACTAATTTGGCTTGAGTACTATGGATTGTACAAATTTCTGATTAG AATCCTCTGTAATTGGCAAAGATAATTTTTTGAAAGGGGTGCTCCTTTTTTTTCAACCTTTCAATCCATTAATAATTATC AAATTTGTGCTAGTTAGTTATTGTTTTTTCATGGTATTTGGATGAGTAGGGCCTCAGATTTTCCTAGGGAATATGATGGA GCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTCTGGTGCAGTGGACAGATTGTCACCT TGCTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGGTAAGGAGGAGTTTAGATTTTTTTTATATGAATATTGAAA ATTTGAAATGAGGGAGTTGGACAAGGTGAGGAATTTGCCTCATGATGTGTGTAGGTGTATGTGGATGGGACAACCACCAT GTCTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGGTATAATTTTCCTTGTGGTTTAATCTAGATTGAGTTAGT TAGTTTGCTTTTTAGCTTTTGTTGGTTGCTGACACTGTTTAGCTTCTGATTTGAGCAGCGGTCATTTATCCCTCTCTGTT GCAACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAGATG ATGAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGTAAG ATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGTACTCCCTCAACTCTCTGTGTGACTT TGTCTGTCCCTATTCTTTTACAATCATGACTTATAAGTATCAAGAAGACAGAGGATTTTAGGGTTGTTTGATTTTATTGT ATTGACGTCTTTGGTTCTTTGTGGTTAACAATCAACTCTATGTCTATGGTTACATTTTGTTAGTTTTTGCTGATTTCATA CTGTATAGACATGGTCACTACTAAATGACTACAGTGTTTAAGTAATAGTCCCATTCTTGAGTGA
CDS sequence (LotjaGi4g1v0054900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACGTGGCGGCTTCCATGCGTAAGTCCTTCAAGGACTCATTGAAACTCCTTGAAGCTGATATTCACCATGCCAATAC CCTGGCCTCAGATTTTCCTAGGGAATATGATGGAGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGT TTCTTTTTCTGGTGCAGTGGACAGATTGTCACCTTGCTGGGGCCCTTGGATTGTTGAGAATCCTAATTTACAAGGTGTAT GTGGATGGGACAACCACCATGTCTACTCATGAAAGAAAAGCAAGCATTAGAGAATTCTATGCGGTCATTTATCCCTCTCT GTTGCAACTTCAGAAAGGCGTTACTGATACTGAGGATAGAAAGCAGAAGGCTGTGTGCATGGAGAGGTATCGCAGAAGAG ATGATGAAGAGTACTGGCAATCTTCTGACTTAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGT AAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGCGAATGGTCTTTGGTTCTTTGTGGTTAA
Protein sequence (LotjaGi4g1v0054900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVAASMRKSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVY VDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDRKQKAVCMERYRRRDDEEYWQSSDLDIEREDECGICMETNS KIVLPNCNHAMCLKCYREWSLVLCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 180 | 174 | 1.3E-98 | – | |
| PANTHER | 7 | 180 | 174 | 1.3E-98 | – | |
| Gene3D | 133 | 182 | 50 | 4.0E-8 | ||
| SUPERFAMILY | 140 | 180 | 41 | 2.65E-7 | – | |
| ProSiteProfiles | 152 | 184 | 33 | 8.816 | ||
| Pfam | 152 | 179 | 28 | 2.6E-5 | ||
| ProSitePatterns | 167 | 176 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0054900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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