Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0059800 |
| Transcript ID | LotjaGi4g1v0059800.11 |
| Related isoforms 17 |
|
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi4g1v0059800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7178326..7184457) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGCAGATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGA CAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGG AGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATG CAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGC CAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAA CATTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTG AAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGA CAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACT ACAACATTCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACA GGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTAT TCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGA AAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATT ACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCA GCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCC TCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTG GAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCAT CTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCC TTCGTTTGAGGGGTGGTTATTAAGTATGTGGTAGTTGTGTAGTTCTTGTCAGTGTGTTGGAGTCCTACAGATCTTTGATG TTTTCTGTTCAAGTGTCTTGGGTCCGTGATGGCCCTTGAAAAACTATCCTTTATTTGGTTTTTGAATAATAATTATGTTC ACCAAGTATTCCTTATGAATATGGTCAATTTGCTAGCATTCAAGTTTGTTCTTTATGTTGTCATCTTTCAATGGGTGATT CACCAATTAATCAGGAAGTTGTCTTAATTTCTTGTCAAATGATCAGTTTCAGCATCTGAGTAATAACCGAAGAGCATGCT TAGCCCTTTTGTGGAAACACAAGAAAAATAAGTTCATATTCCACTTTCTCTTTTAACTTATTTCCACATGCTATTTCATC TCATCTCTCACCTCTGTATAATATCACAATCACTTATCATATTTCTAATTTCTTTCTATTCTCTCCTATATATGAATACA ATGATGCTATAGATTTTACGAAATAACTTTTTGACGAAAAGCTAAAGTGTGTGTTGTTCAGAAATTTAAACTTCCTTCAA ATATATAACAATCAAGATAGAATAGGAATAGCTAACATCCAATGGTTGATAAAAAGTTCGTATATTTTTTCTAAAAAATT CCCGTACTACTAATCATTTCCGACGTGGATAAGTGTTAAGAAGTCATTTTTCTATAACATCATCATGTTGTATGAGAGGA TCCTAATTCATTATGTACTTGATTCAAATTTGAGTATCTCATCATGACCTGAATTTCACTATTTTTCTTTTGGTTGATAA CAGTCGTGGCTAAAAGCAAACGTATAAGGATCAATACTAAAACCAGGTAAAAAGTCATAAATCTTCATCGTTATAGGCAA TGAGTTAACCTCCCTTAGAATATGCTTCCAGTGGATGTGGGGCTGTTCTCAATCAGTGAATTAATTTCTCTCACCAAAGG TGCACTTGGATTAGAAGGATGACAGTCTTTATCCAAAAATCTGATAGCTAGCTCTGAATCAGATTCAATCAGAATTCTAG AAAATCCCCTAGCAGCCAATTTTAGGCCATGAATAATGCCCCATAACTCAACATGTAACACAGAGTATTTACCAAGATTC ACACAAAAATTCACTATGAACACACCATTGTTGTCTCTAACCACTCCACCACAAGTAGCAATATTATCCTTAGAAGTGAA GGATCCATCAATATTCAATTGGAGGGATCCATTTTAACAAAATAGAATTATCTTGCCAGACATCTAAGGCAAAAGGGCAA TCTCTAAGCACATGCAGAGTTGTTTCTCTGATCCCTAAACACCGAGAGCAATCAGAAATATGAGTCATATGCCTCGAGGT TCGAGCATCATTTGTGATGAGAATATCATTTGCAACCTTCAACATAAAGAGCTTCATACGCCGGTTACCTTTCCACTTCC AAACCAACTGGAACAACTTCCTGTTATCATCATTGGAAAAAACAGAAACAAAATCATAAGCTGATTTTAAAGAAAAACGA CCATCCGGGATCAATTCCAAATTCCTGATTTTGAAGCATGATATAAGAAGGGGAAAAAGGACGCAGTAGATCAAACTTTG TTTTTACTGTTGAGAAGAGTAGGGGCGGTGGGTCACAGTTTTTTCGCCTTGTTCCCCCTGGTTCTGCAAATTAATGTTTA GTTTATGCATAATTTTTTCTGGTTTGTAACACTGGGCAGTAAGGATTGTTTTGAGGTTGGGTAGTCTTGGTGGCCCTTTC TTCTGTCTTTTGAGTTTTTTTTTCCCTTTTCTCTTGTATCATTTAGGTTGAAAAAGGAGAATAGTTTATAAGTTTCACTT GTTCATTCACGGAGATAAAAGAGAAATGTGGTGTGAGGGTGAAGAACATTGAACAATTGAAGAACATTCAAGAAATAATT TTTTTTTCTGATTATTTAATTGAGTTGGAATTAAAAATAATTTTTTATTATTTTTGTAATTAAAAAATAATAATAAAAGC CACGTGGAATTGATGACTGGGATAAAATTGTCTGCTGGCACACTTTGGCCTTAATTGAATTAAAAAAAAAATTCTAGGGA CCCAATTTGATGCAAAAAATTTCTAGGCCCTGGATTTGATTCCCTTAACAACTACAGGGGCCTTCTGATGTATTAAGCCT TTATTTTTTTTTTATTTTTTTAATATAGAAAAGCCACGTGGATAATATGAGAATTAAAAAAAAAGCCACGTAAGCCCCTT CCGTTAGTTTTCTAACGTCAAACTGACGGAGGGGTACTCGCTACACTGTTTTGTTTCATTGAGGGTACAAACATAGACGA AAATAGATGAGGGGTGTCTTTTGCACAAACATGAAACATCAGGGGCAACAAATGCTTTTAAGCCTAAAATTAATAAAATC CTATCTAAGATCAACAATATCTCAGCAAAAATTAAATGGGTTGACTTTATTATCTATTGGAAAAGAAACTTTAAAAGAAT CGATTATGATAATTTAACAAACGATTTTGAATTTCAAAAAGCCCGAAAATAAATTTTATTTAAATTATTTATATTAAAAA ATTAATTTTATAAATGCCTAATTCTTAGAGTTCGCTTTAGACCTCAATATTGGTTGAGAAGGCCCTGCTTTTCTGCAAAA GGATTTTTTTTTTGTGTTCAATAATATTTTATGCATACTTCTAATATACTTGGATTAAAAAGAAAATTGAGAGATAAGAA GAGAAATAAGTGGAAATGAGATAAAGGGAGATGATAAGTGCATGGGTTGGGATGGTCTTATTGGGATGGGCATGACAAGT AGATTTATAGCTTCCAAGCGTTTGAAGTTGGCAAAAACCCGTTCATTTCAGAGGCTAGCGTGTTATGTGAAGGTCTCTCT CTTATTTGGAACTGCAAGTATAGAAACATCATTTGTGAAGGGGATGTGCAAAGTTACTTTCTTCGATTGAGACCTAAAGA ACTTGAGCTTGATCCGGTATTCACCTTCCACCACTGCTACCACCACCACCACCATCACCTTCCACCTTCCACCACCGCCT CCACCACCTCAACCGTTACCCACCACCACCACTACCACTGCCACCACCACAACCATCGTTACCATCACTTCCAACACCAC TCCCGTTGCTGCCACCACCTAACCCACCACTACCACTACAGTCGCCGCATCCATCCACCACCTCCTTCTACTGCAGTCAC GCCACTACCATGATCACCATCACTTTCACCACCACTGCTGCCACCCTAACCACCACTCAGCATCATCGTTGTCACCTATA CAGCCACCATCACAACCACATCCTCCATCACCACATGGCCATTATCGCAGCCACATCGGCTGCCACCGCCATTTTATCAC TTATTAACACCATCTTCATTTTTATTATACATATCATTATTCAATATCTCACAAATCCTCCGAATTGATTTTTTTTATTA TTTAATCGTTTTTTATGTGTTTAAATATTAAAAAGATTGAATTCAATGATTAAATTTGAGAGTATCTTTTATTTTTAACA ATAATCTGAGAGGATATCGTCCTTTATTGATACCTAATAAAAAGTTGCCGAAACCGACTCCATCACCAAACGTTGGCGTG CAAATAGAGTTGACCGTCTACCGTCTTGTCCACGCGTCTCAACATGATTGGCTGAGCTGGCGTTGCCGTAAGAAATCCTC ATATCGTTCTGCTATAAAAACCAAGCACCATATTCAACATTCTTCATGTTAAGATTCGATTTCTAGGGTTTTGTTTTTGC AGAGAAAGAAAGAAAGAAGAAACCCTCATCTCACGTTTCAAGGTATCTACAGTTTCTACTCTTTCTCTCTTTCATGTTAA GATTCGATTTCTAGGGTTTTGTTTTTGTTCATTGTTAATCGAACTATGTGATATTTTTTGGGTTTTCTTTTGAATCTAAT TGGTGGTGGGCATGATTTTACTATCTTATTATTCAATCAAGATTAGATCTGTGAAACTTTTGTTTATGAATTAGCCATGG GTGTTAGACGTGTCTATATTGGGTATTGATTCAATTGTTATCGTAAACGAGTTTAAGGGTTTCTATTGAGATTCGATTGT TAGGGTTTTGGCTTCGTTATTAATTGATAATCAGAATTCAGAAAAGCCCTTTTATTTTGTTTTGGATTCTTTGGTGTCTC TACATGATTTTACTTTCTTATTTTGATTTGGATCATATCTTTCTGAAACTTTTCTTGATTACTTAGCCAATTTCCATAGA ATAATCCCATGATTGAAGAAGATGTTGAGATGTCAGATATAGGATATGTATTCAGTGTCCAATAATTGTTAAGTGTCTTA ACTTAGGTTTACATTTGTTTTGGGTTTTGACTTCTTTCATTCTGGACATTGATTTATTAATTTATTCATTAACTGGGATA TTGCTTCTGTTTGTGTTGTTTTTTACCTGTAATTTAGTGACCACCATTGTCACCGGATTTATTGAGTTTTTGGGAAAATT TTTACCATAATGAATAATTGGTGATTGCTCATTTGCCTTTTTGGTTTGGATGATGCAGATGCAAATCTTTGTCAAGACCC TTACTGGCAAGACCATTACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCTAAAATTCAAGATAAGGAA GGGATCCCACCGGACCAGCAGCGTCTCATTTTTTCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACAT CCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATTTAG
CDS sequence (LotjaGi4g1v0059800.11) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGA CAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGG AGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATG CAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGC CAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAA CATTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTG AAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGA CAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACT ACAACATTCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACA GGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTAT TCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGA AAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATT ACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCA GCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCC TCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTG GAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCAT CTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCC TTCGTTTGAGGGGTGGTATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATTACTCTTGAAGTTGAGAGTTCAGAT ACCATAGACAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTTCTGGCAA GCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTG GTGGAATTTAG
Protein sequence (LotjaGi4g1v0059800.11) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGGMQIFV KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD TIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 80 | 80 | 1.6E-45 | – | |
| ProSiteProfiles | 4 | 79 | 76 | 30.452 | ||
| CDD | 4 | 79 | 76 | 1.92516E-46 | – | |
| PANTHER | 4 | 166 | 163 | 0.0 | – | |
| SMART | 4 | 75 | 72 | 3.0E-35 | ||
| PANTHER | 4 | 166 | 163 | 0.0 | – | |
| SUPERFAMILY | 4 | 79 | 76 | 1.87E-33 | ||
| Pfam | 6 | 77 | 72 | 2.9E-33 | ||
| PRINTS | 14 | 34 | 21 | 1.1E-37 | ||
| ProSitePatterns | 30 | 55 | 26 | - | ||
| PRINTS | 35 | 55 | 21 | 1.1E-37 | ||
| PRINTS | 56 | 77 | 22 | 1.1E-37 | ||
| SMART | 80 | 151 | 72 | 1.4E-35 | ||
| ProSiteProfiles | 80 | 155 | 76 | 30.822 | ||
| CDD | 80 | 155 | 76 | 1.69379E-45 | – | |
| SUPERFAMILY | 80 | 155 | 76 | 8.29E-34 | ||
| Gene3D | 81 | 155 | 75 | 4.3E-45 | – | |
| Pfam | 82 | 153 | 72 | 9.9E-34 | ||
| PANTHER | 86 | 320 | 235 | 0.0 | – | |
| PANTHER | 86 | 320 | 235 | 0.0 | – | |
| ProSitePatterns | 106 | 131 | 26 | - | ||
| SUPERFAMILY | 154 | 231 | 78 | 6.84E-34 | ||
| SMART | 156 | 227 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 156 | 231 | 76 | 30.452 | ||
| Gene3D | 156 | 231 | 76 | 3.2E-45 | – | |
| CDD | 156 | 231 | 76 | 1.92516E-46 | – | |
| Pfam | 158 | 229 | 72 | 2.9E-33 | ||
| PANTHER | 162 | 373 | 212 | 0.0 | – | |
| PANTHER | 162 | 373 | 212 | 0.0 | – | |
| ProSitePatterns | 182 | 207 | 26 | - | ||
| SUPERFAMILY | 231 | 307 | 77 | 1.02E-33 | ||
| ProSiteProfiles | 232 | 307 | 76 | 30.452 | ||
| CDD | 232 | 307 | 76 | 1.92516E-46 | – | |
| Gene3D | 232 | 308 | 77 | 2.0E-45 | – | |
| SMART | 232 | 303 | 72 | 3.0E-35 | ||
| Pfam | 234 | 305 | 72 | 2.9E-33 | ||
| ProSitePatterns | 258 | 283 | 26 | - | ||
| SUPERFAMILY | 307 | 383 | 77 | 9.95E-34 | ||
| ProSiteProfiles | 308 | 383 | 76 | 30.452 | ||
| CDD | 308 | 383 | 76 | 1.92516E-46 | – | |
| SMART | 308 | 379 | 72 | 3.0E-35 | ||
| Gene3D | 309 | 383 | 75 | 3.2E-45 | – | |
| Pfam | 310 | 381 | 72 | 2.9E-33 | ||
| PANTHER | 314 | 535 | 222 | 0.0 | – | |
| PANTHER | 314 | 535 | 222 | 0.0 | – | |
| ProSitePatterns | 334 | 359 | 26 | - | ||
| SUPERFAMILY | 383 | 459 | 77 | 1.02E-33 | ||
| CDD | 384 | 459 | 76 | 1.92516E-46 | – | |
| ProSiteProfiles | 384 | 459 | 76 | 30.452 | ||
| SMART | 384 | 455 | 72 | 3.0E-35 | ||
| Gene3D | 384 | 459 | 76 | 2.1E-45 | – | |
| Pfam | 386 | 457 | 72 | 2.9E-33 | ||
| ProSitePatterns | 410 | 435 | 26 | - | ||
| SUPERFAMILY | 459 | 535 | 77 | 1.2E-33 | ||
| Gene3D | 460 | 536 | 77 | 8.0E-45 | – | |
| CDD | 460 | 535 | 76 | 6.04943E-46 | – | |
| ProSiteProfiles | 460 | 535 | 76 | 30.517 | ||
| SMART | 460 | 531 | 72 | 4.8E-35 | ||
| Pfam | 462 | 533 | 72 | 2.6E-33 | ||
| ProSitePatterns | 486 | 511 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0059800.11, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…