Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0059800 |
| Transcript ID | LotjaGi4g1v0059800.12 |
| Related isoforms 17 |
|
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|Q41754|Q41754_MAIZE Polyubiquitin containing 7 ubiquitin monomers; Found in the gene: LotjaGi4g1v0059800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7182598..7185410) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGAGTTTGACCGTCTACCATCTTGTCCACGCGTCTCAACATGATTGGCTGAGCTGGCGTTGCCGTAAGAAATCCTC ATATCGTTCTGCTATAAAAACCAAGCACCATATACAACATTCTTCATTCACAAATCACAATAGCAAAGCAACAAACATCT CTCTGAGTCTTTGCAGAGAAAGAAAGAAAGAAAGAAAGAAAAATCCCTCATCTCTCACCGTTTCAAGGTATCCACACTTT CTACTCTTTCTCTCTTTCATGATAAGCTTCGATTCGATTTTTAGGGTTTTGTTTGTTCGTCGTTAATCGAATCGAATTTA ATTGGCGTTGGGCATGATTTTACTGTTTTATTATTCAATCAAGATTAGTACTTTGAAACTTTTGTTTATGAATTAGCCAT GGGTGTTAGACTTTTCTATCTTTGGTATTGATTCAATTGTTATCGTAAACGAGTTTAATCGATAATCAGGGTTTGAATTC GATCGTTAGGGTTTTGTATTTATTATTAATCGATCATCAGAAAAACCACTTTTATTTTGATTTGGATTCTTAGGTGTCCC TAAAATTCTTTTGAATTGAATTAGTTTACATGATTTTACTGTCTTATTAATGAATCAAGATGATGGCTTTCTGAAACTTT TCTTGATTTACTTAGCCAATTTCCTTAGAATAATTCCATGATTGAAAATTATGTTGAGATTTCAGATTTAGGATATGTAT TCAGTATCCAATAATTGTTTAGTGTCTTAACCTAGGTTTATATTTGTTTTGGGTTTTTACTTCTTTCTTTCTGGGCTTTT TGCTTCTGTATGTGTTGTTATTTCCCTGTAATTTAGCATCTAGCATTGTCACCGGATAGAGTTTTTGTAAAATTGATGTA CTTGCTGATCCTTTTCAGTTCTGTTGAACATAATGAATAATTGGTGATTGACACATTTGCCTTTTTTGTTTTGATGATGC AGATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTG AAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGG GCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATGCAGATCT TTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGCCAAGATT CAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAACATTGGC TGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACCC TTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAG GGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACAT TCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAGA CAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCA GATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTC AACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATTACTTTAG AGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAAAGG TTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATTT GGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTT CTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCT GGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTT GAGGGGTGGTTATTAAGTATGTGGTAGTTGTGTAGTTCTTGTCAGTGTGTTGGAGTCCTACAGATCTTTGATGTTTTCTG TTCAAGTGTCTTGGGTCCGTGATGGCCCTTGAAAAACTATCCTTTATTTGGTTTTTGAATAATAATTATGTTCACCAAGT ATTCCTTATGAATATGGTCAATTTGCTAGCATTCAAGTTTGTTCTTTATGTTGTCATCTTTCAATGGGTGATTCACCAAT TAATCAGGAAGTTGTCTTAATTTCTTGTCAAATGATCAGTTTCAGCATCTGAGTAATAACCGAAGAGCATGCTTAGCCCT TTTGTGGAAACACAAGAAAAATAAGTTCATATTCCACTTTCTCTTTTAACTTATTTCCACATGCTATTTCATCTCATCTC TCACCTCTGTATAATATCACAATCACTTATCATATTTCTAATTTCTTTCTATTCTCTCCTATATATGAATACAATGATGC TATAGATTTTACG
CDS sequence (LotjaGi4g1v0059800.12) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAA GGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGGC GTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATGCAGATCTTT GTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCA AGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTG ATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAA
Protein sequence (LotjaGi4g1v0059800.12) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 76 | 76 | 3.05E-34 | ||
| ProSiteProfiles | 1 | 76 | 76 | 30.452 | ||
| Gene3D | 1 | 77 | 77 | 5.0E-46 | – | |
| PANTHER | 1 | 152 | 152 | 2.3E-131 | – | |
| PANTHER | 1 | 152 | 152 | 2.3E-131 | – | |
| CDD | 1 | 76 | 76 | 4.12459E-51 | – | |
| SMART | 1 | 72 | 72 | 3.0E-35 | ||
| Pfam | 3 | 74 | 72 | 2.9E-34 | ||
| PRINTS | 11 | 31 | 21 | 5.2E-39 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PRINTS | 32 | 52 | 21 | 5.2E-39 | ||
| PRINTS | 53 | 74 | 22 | 5.2E-39 | ||
| SUPERFAMILY | 76 | 152 | 77 | 1.14E-34 | ||
| SMART | 77 | 148 | 72 | 3.0E-35 | ||
| CDD | 77 | 152 | 76 | 4.12459E-51 | – | |
| ProSiteProfiles | 77 | 152 | 76 | 30.452 | ||
| Gene3D | 78 | 153 | 76 | 7.4E-46 | – | |
| Pfam | 79 | 150 | 72 | 2.9E-34 | ||
| ProSitePatterns | 103 | 128 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0059800.12, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…