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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0059800 |
| Transcript ID | LotjaGi4g1v0059800.14 |
| Related isoforms 17 |
|
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|D7M3C0|D7M3C0_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0059800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7183075..7184291) extracted from Lotus japonicus Gifu genome v1.2.
GGCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATGCAGATC TTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGCCAAGAT TCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAACATTGG CTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACC CTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGA GGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACA TTCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAG ACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCC AGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGT CAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATTACTTTA GAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAAAG GTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATT TGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGT TCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGC TGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTT TGAGGGGTGGTTATTAA
CDS sequence (LotjaGi4g1v0059800.14) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAA GGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCC GAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTC GTGAAAACCCTTACTGGCAAGACTATTACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCA GGATAAGGAGGGTATTCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTG ACTACAACATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTC ACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGG CATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTC AGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAA
Protein sequence (LotjaGi4g1v0059800.14) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 76 | 76 | 7.20923E-50 | – | |
| PANTHER | 1 | 133 | 133 | 6.7E-222 | – | |
| SUPERFAMILY | 1 | 76 | 76 | 7.52E-34 | ||
| PANTHER | 1 | 133 | 133 | 6.7E-222 | – | |
| Gene3D | 1 | 77 | 77 | 1.3E-45 | – | |
| SMART | 1 | 72 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 1 | 76 | 76 | 30.452 | ||
| Pfam | 3 | 74 | 72 | 7.0E-34 | ||
| PRINTS | 11 | 31 | 21 | 1.3E-38 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PRINTS | 32 | 52 | 21 | 1.3E-38 | ||
| PRINTS | 53 | 74 | 22 | 1.3E-38 | ||
| PANTHER | 76 | 164 | 89 | 6.7E-222 | – | |
| PANTHER | 76 | 164 | 89 | 6.7E-222 | – | |
| SUPERFAMILY | 76 | 152 | 77 | 3.05E-34 | ||
| CDD | 77 | 152 | 76 | 7.20923E-50 | – | |
| SMART | 77 | 148 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 77 | 152 | 76 | 30.452 | ||
| Gene3D | 78 | 153 | 76 | 7.3E-46 | – | |
| Pfam | 79 | 150 | 72 | 7.0E-34 | ||
| ProSitePatterns | 103 | 128 | 26 | - | ||
| PANTHER | 126 | 228 | 103 | 6.7E-222 | – | |
| PANTHER | 126 | 228 | 103 | 6.7E-222 | – | |
| SUPERFAMILY | 152 | 228 | 77 | 2.85E-34 | ||
| SMART | 153 | 224 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 153 | 228 | 76 | 30.452 | ||
| CDD | 153 | 228 | 76 | 7.20923E-50 | – | |
| Gene3D | 154 | 229 | 76 | 1.9E-45 | – | |
| Pfam | 155 | 226 | 72 | 7.0E-34 | ||
| ProSitePatterns | 179 | 204 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0059800.14, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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