Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0059800 |
| Transcript ID | LotjaGi4g1v0059800.18 |
| Related isoforms 17 |
|
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi4g1v0059800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7183075..7184747) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGAATAATTCCATGATTGAAAATTATGTTGAGATTTCAGATTTAGGATATGTATTCAGTATCCAATAATTGTTTAGT GTCTTAACCTAGGTTTATATTTGTTTTGGGTTTTTACTTCTTTCTTTCTGGGCTTTTTGCTTCTGTATGTGTTGTTATTT CCCTGTAATTTAGCATCTAGCATTGTCACCGGATAGAGTTTTTGTAAAATTGATGTACTTGCTGATCCTTTTCAGTTCTG TTGAACATAATGAATAATTGGTGATTGACACATTTGCCTTTTTTGTTTTGATGATGCAGATGCAAATCTTTGTCAAGACC CTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCTAAAATTCAAGATAAGGA AGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACA TCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATGCAGATCTTTGTGAAGACATTGACTGGAAAG ACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCC AGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAACATTGGCTGATTACAACATTCAGAAAGAGT CCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACTTTG GAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAACAGAG GCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACATTCAGAAAGAGTCCACCCTACACT TGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGT TCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGC GGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGAC TCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATTACTTTAGAGGTAGAGAGCTCGGACACAATT GACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACT TGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTA TGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATCGACAACGTGAAG GCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAG AACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAA
CDS sequence (LotjaGi4g1v0059800.18) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAAAATTATATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATAC CATAGACAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGC AGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGT GGAATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGT TAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATG ACAGAACATTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATT TTTGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAAT TCAAGACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGG CCGACTACAACATTCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACC CTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGA GGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACA TCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAG ACTATTACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCC AGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGT CTACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTT GAGGTGGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAG GCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACC TTGTCCTTCGTTTGAGGGGTGGTTATTAA
Protein sequence (LotjaGi4g1v0059800.18) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIENYMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGGMQI FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 81 | 80 | 2.5E-45 | – | |
| SUPERFAMILY | 3 | 81 | 79 | 2.64E-34 | ||
| PANTHER | 5 | 162 | 158 | 0.0 | – | |
| PANTHER | 5 | 162 | 158 | 0.0 | – | |
| SMART | 6 | 77 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 6 | 81 | 76 | 30.452 | ||
| CDD | 6 | 81 | 76 | 3.13092E-47 | – | |
| Pfam | 8 | 79 | 72 | 2.4E-33 | ||
| PRINTS | 16 | 36 | 21 | 7.5E-38 | ||
| ProSitePatterns | 32 | 57 | 26 | - | ||
| PRINTS | 37 | 57 | 21 | 7.5E-38 | ||
| PRINTS | 58 | 79 | 22 | 7.5E-38 | ||
| SUPERFAMILY | 81 | 157 | 77 | 4.47E-34 | ||
| PANTHER | 82 | 233 | 152 | 0.0 | – | |
| SMART | 82 | 153 | 72 | 1.4E-35 | ||
| ProSiteProfiles | 82 | 157 | 76 | 30.822 | ||
| Gene3D | 82 | 158 | 77 | 2.1E-45 | – | |
| CDD | 82 | 157 | 76 | 2.87382E-46 | – | |
| PANTHER | 82 | 233 | 152 | 0.0 | – | |
| Pfam | 84 | 155 | 72 | 7.9E-34 | ||
| ProSitePatterns | 108 | 133 | 26 | - | ||
| PANTHER | 153 | 310 | 158 | 0.0 | – | |
| PANTHER | 153 | 310 | 158 | 0.0 | – | |
| SUPERFAMILY | 157 | 233 | 77 | 7.93E-34 | ||
| ProSiteProfiles | 158 | 233 | 76 | 30.452 | ||
| SMART | 158 | 229 | 72 | 3.0E-35 | ||
| CDD | 158 | 233 | 76 | 3.13092E-47 | – | |
| Gene3D | 159 | 233 | 75 | 4.3E-45 | – | |
| Pfam | 160 | 231 | 72 | 2.4E-33 | ||
| ProSitePatterns | 184 | 209 | 26 | - | ||
| PANTHER | 230 | 384 | 155 | 0.0 | – | |
| PANTHER | 230 | 384 | 155 | 0.0 | – | |
| SUPERFAMILY | 233 | 309 | 77 | 1.08E-33 | ||
| ProSiteProfiles | 234 | 309 | 76 | 30.452 | ||
| SMART | 234 | 305 | 72 | 3.0E-35 | ||
| CDD | 234 | 309 | 76 | 3.13092E-47 | – | |
| Gene3D | 234 | 309 | 76 | 4.3E-45 | – | |
| Pfam | 236 | 307 | 72 | 2.4E-33 | ||
| ProSitePatterns | 260 | 285 | 26 | - | ||
| PANTHER | 305 | 461 | 157 | 0.0 | – | |
| PANTHER | 305 | 461 | 157 | 0.0 | – | |
| SUPERFAMILY | 309 | 385 | 77 | 1.08E-33 | ||
| SMART | 310 | 381 | 72 | 3.0E-35 | ||
| Gene3D | 310 | 385 | 76 | 1.6E-45 | – | |
| CDD | 310 | 385 | 76 | 3.13092E-47 | – | |
| ProSiteProfiles | 310 | 385 | 76 | 30.452 | ||
| Pfam | 312 | 383 | 72 | 2.4E-33 | ||
| ProSitePatterns | 336 | 361 | 26 | - | ||
| SUPERFAMILY | 385 | 461 | 77 | 7.32E-34 | ||
| ProSiteProfiles | 386 | 461 | 76 | 30.452 | ||
| Gene3D | 386 | 462 | 77 | 4.2E-45 | – | |
| CDD | 386 | 461 | 76 | 3.13092E-47 | – | |
| SMART | 386 | 457 | 72 | 3.0E-35 | ||
| Pfam | 388 | 459 | 72 | 2.4E-33 | ||
| ProSitePatterns | 412 | 437 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0059800.18, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…