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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0059800 |
| Transcript ID | LotjaGi4g1v0059800.5 |
| Related isoforms 17 |
|
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G02890.1 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A0V0HI41|A0A0V0HI41_SOLCH Putative ovule protein; Found in the gene: LotjaGi4g1v0059800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7171881..7173095) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGATTTAGTCCATCCCAAAATACTATGCTCTTACTATTAGACATAGTTGTTGCAAGATTAGACATTGTTGTTGCTGC CAAGACATCTATGGAATATGAATCAAACATTAACATGTTATGATCCACTGGTATGGACTAGTTTGAAATTGGTTCATAGA AATTGAATCCTTCAATTTGATGAGACTTCATTTGTTTCATATGCCTAGGATGTGCTGAGATTTCAGATTACGTGAGTCCA ACTTGTAGAAGTTGTTAATTGTCCAACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTGAAGACCC TCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAG GGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACAT TCGGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCATAGGAAAGA CAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAACGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCA GATCAGCAAAGGCTTATTTTCGCTGGCAAACAGCTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTC AACTCTCCACCTTGTGTTGCGACTCCGTGGTTGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATTACTTTAG AGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATCCCCCAGACCAGCAAAGGT TGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATTTG GTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTC TGACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTG GCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTG AGGGGTGGTTATTAA
CDS sequence (LotjaGi4g1v0059800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATTTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACAATTGACAATGTGAA GGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCA GAACCTTGGCCGACTACAACATTCGGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTT GTCAAGACCCTCATAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAACGTGAAGGCCAAAATTCA AGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCTGGCAAACAGCTTGAGGATGGCCGAACTCTGGCAG ATTATAACATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTTGTATGCAGATTTTCGTGAAAACCCTT ACTGGCAAGACTATTACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGG TATCCCCCAGACCAGCAAAGGTTGA
Protein sequence (LotjaGi4g1v0059800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGGMQIF VKTLIGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGCMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPQTSKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 1.2E-156 | – | |
| PANTHER | 1 | 189 | 189 | 1.2E-156 | – | |
| Gene3D | 1 | 77 | 77 | 4.4E-45 | – | |
| CDD | 1 | 76 | 76 | 2.06233E-49 | – | |
| ProSiteProfiles | 1 | 76 | 76 | 30.191 | ||
| SUPERFAMILY | 1 | 76 | 76 | 1.1E-33 | ||
| SMART | 1 | 72 | 72 | 3.1E-34 | ||
| Pfam | 3 | 74 | 72 | 1.5E-33 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| SUPERFAMILY | 76 | 151 | 76 | 1.48E-32 | ||
| SMART | 77 | 148 | 72 | 8.3E-34 | ||
| CDD | 77 | 151 | 75 | 1.45719E-48 | – | |
| ProSiteProfiles | 77 | 152 | 76 | 28.536 | ||
| Gene3D | 78 | 152 | 75 | 7.4E-44 | – | |
| Pfam | 79 | 150 | 72 | 5.7E-33 | ||
| PRINTS | 87 | 107 | 21 | 7.9E-39 | ||
| ProSitePatterns | 103 | 128 | 26 | - | ||
| PRINTS | 108 | 128 | 21 | 7.9E-39 | ||
| PRINTS | 129 | 150 | 22 | 7.9E-39 | ||
| SUPERFAMILY | 151 | 190 | 40 | 3.45E-12 | ||
| SMART | 153 | 194 | 42 | 3.1 | ||
| ProSiteProfiles | 153 | 194 | 42 | 12.095 | ||
| Gene3D | 153 | 192 | 40 | 1.2E-20 | – | |
| CDD | 153 | 189 | 37 | 5.05177E-19 | – | |
| Pfam | 155 | 190 | 36 | 1.9E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0059800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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