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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0069900 |
| Transcript ID | LotjaGi4g1v0069900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|I1KLW4|I1KLW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0069900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8834788..8836959) extracted from Lotus japonicus Gifu genome v1.2.
ATGATACTATTTCTCAGATTCTGCCCAGTGCGCAACTGTTGCAAACGAGTAGAAAAGTTCCGACTTTTCACGACCCTTTT GCGAGATTCAGAGCCCCATCACCCTCACGTGATCTCCACCAACATCTCCATTGCCCACCGTGCTAAAACCGGCGAACTAG CAGAAGCACGCCACATGTTCGACGAAATGCCGCTTCGAACAGTTTCTTCATGGAACACCATGATTTCTGGCTACAGCCAA TGGGGGAGGTACGATGAGGCTCTGGCTCTTGCTTCCTTCATGCATCGCTCTTGCGTCAAGCTCAATGAGATTTCTTTCTC CGCGGTTTTGAGCTCGTGCGCGCGTTCTGGGTCGTTGTTTCTTGGAAAGCAAGTTCATTCACTCCTTTTGAAATCTGGGT TTGAGAAGTTTGGCCTTGTGGGTAGTGCTTTGTTGTATTTCTGTGTGCGTTGTTGTGGAATTGGTGAAGCTGAGCTGGTT TTTGAGGAGCTGCGTGATGGGAATCACGTGTTGTGGAGTTTGATGCTTTCGGGTTATGTGCAGCGTGACATGATGGGTAA TGCTATGGACTTGTTTGGAAAAATGCCTGTTCGGGATGTTGTGGCGTGGACTACATTGATATCAGGTTATGCAAGGAGGG AAGATGGGTGTGAGAGGGCTTTGGATTTGTTTCGGTGTATGAGGAGGTCTGAGGTGTTGCCTAATGAGTTCACTTTGGAT TGTGTTATAAGGATTTGTGCTAGACTTGGGGCTCTACATGCAGGTAAGGTTGTTCATGGGCTTTGCATTAAGGATGGGTT AGATTTTGATAACTCAATTGGTGGTGCACTTGCTGAATTTTACTGTGATCGTGATGCTATAGATGATGCCAAGAGAGTTT ATGAGAGTATGGGAGGAGAAGCTTGTTTGAATGTTGCTAACTCACTGATTGGGGGCCTTATCTTGATGGGAAGGATTGAA GAAGCTGAGCTGATATTTTATGGATTGAGAGAGACAAATCCCATCTCATATAATTTGATGATTAAAGGTTATGCTATGAG TAGTCAGATTGAAAAATCAAAAAGATTATTTGAGAAAATGGCTCCCAAAAATTTAACTTCCTTAAATACTATGATTTCTG TGTATTCCAAAAATGGTGAACTTGATGAAGCTGTGAAGCTTTTTGACAAAACTAAAGGAGAACGAAACTCTGTCACATGG AATTCAATGATGTCTGGTTATATTCATAATGGTCAGCACAGCGAGGCATTAAAATTATATGTGACTATGCGCAGATTATC AGTGGACCATAGCAGATCAACATTCTCTGTCCTATTTCGTGCTTGCACATCTCTTTGTTCTTTTCAACAAGGACAGTTAC TTCATGCTCACTTATCCAAAACACCATTCCAAGCAAATGTTTACGTCGGCACTGCTCTTGTAGACTTCTATTCCAAATGC GGTCACTTAGCTGATGCTCAAAGGTCATTTACCAGCATTTTTTCACCCAATGTAGCAGCATGGACAGCTCTTATAAATGG CTATGCATATCACGGGCTTGGATCTGAGTCAATTTTACTCTTTCGCTCAATGTTAGTTCAAGGAGTTCTTCCAAATGCAG CTACTTTTGTTGCTATTCTTTCAGCCTGTAGCCACGCTGGTCTACTTAATGAAGGTTTGGAGATTTTTCACTCAATGCAA ATATGCTACAGGGTTACTCCAACAATAGAACATTACACATGCGTTGTGGACCTTCTTGGTCGATCAGGCCGTTTAAAAGA AGCTGAAGAGTTTATTAATCAAATGCCTATTGAAGCAGATGGGGTAATTTGGGGAGCTTTGCTTAATGCGTCTTGGTTCT GGAAGGACATTGAAGTTGGGGAGAGAGCTGCTGAAAAGTTGTTCAGTCTGGATCCCAACCCAATATCTGGTTTTGTCATT TTGTCCAACATGTATGCCATACTAGGTAGATGGGGGCAAAAAACAACAATTAGGAAGAGATTGCAGAGTTTGGAATTGAG AAAAGATCCAGGGTGTAGCTGGATAGAATTGAACAATAATATTCATATGTTCTCTGTAGAAGATAAAACCCATGCTTATT CTGATGTGATTTATGCAACAGTGGATCATCTGACAGCAACCATTAACTCTATTATACCCTTCAATTATATTTAGTAGCAG CAATGGAGGAAA
CDS sequence (LotjaGi4g1v0069900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACTATTTCTCAGATTCTGCCCAGTGCGCAACTGTTGCAAACGAGTAGAAAAGTTCCGACTTTTCACGACCCTTTT GCGAGATTCAGAGCCCCATCACCCTCACGTGATCTCCACCAACATCTCCATTGCCCACCGTGCTAAAACCGGCGAACTAG CAGAAGCACGCCACATGTTCGACGAAATGCCGCTTCGAACAGTTTCTTCATGGAACACCATGATTTCTGGCTACAGCCAA TGGGGGAGGTACGATGAGGCTCTGGCTCTTGCTTCCTTCATGCATCGCTCTTGCGTCAAGCTCAATGAGATTTCTTTCTC CGCGGTTTTGAGCTCGTGCGCGCGTTCTGGGTCGTTGTTTCTTGGAAAGCAAGTTCATTCACTCCTTTTGAAATCTGGGT TTGAGAAGTTTGGCCTTGTGGGTAGTGCTTTGTTGTATTTCTGTGTGCGTTGTTGTGGAATTGGTGAAGCTGAGCTGGTT TTTGAGGAGCTGCGTGATGGGAATCACGTGTTGTGGAGTTTGATGCTTTCGGGTTATGTGCAGCGTGACATGATGGGTAA TGCTATGGACTTGTTTGGAAAAATGCCTGTTCGGGATGTTGTGGCGTGGACTACATTGATATCAGGTTATGCAAGGAGGG AAGATGGGTGTGAGAGGGCTTTGGATTTGTTTCGGTGTATGAGGAGGTCTGAGGTGTTGCCTAATGAGTTCACTTTGGAT TGTGTTATAAGGATTTGTGCTAGACTTGGGGCTCTACATGCAGGTAAGGTTGTTCATGGGCTTTGCATTAAGGATGGGTT AGATTTTGATAACTCAATTGGTGGTGCACTTGCTGAATTTTACTGTGATCGTGATGCTATAGATGATGCCAAGAGAGTTT ATGAGAGTATGGGAGGAGAAGCTTGTTTGAATGTTGCTAACTCACTGATTGGGGGCCTTATCTTGATGGGAAGGATTGAA GAAGCTGAGCTGATATTTTATGGATTGAGAGAGACAAATCCCATCTCATATAATTTGATGATTAAAGGTTATGCTATGAG TAGTCAGATTGAAAAATCAAAAAGATTATTTGAGAAAATGGCTCCCAAAAATTTAACTTCCTTAAATACTATGATTTCTG TGTATTCCAAAAATGGTGAACTTGATGAAGCTGTGAAGCTTTTTGACAAAACTAAAGGAGAACGAAACTCTGTCACATGG AATTCAATGATGTCTGGTTATATTCATAATGGTCAGCACAGCGAGGCATTAAAATTATATGTGACTATGCGCAGATTATC AGTGGACCATAGCAGATCAACATTCTCTGTCCTATTTCGTGCTTGCACATCTCTTTGTTCTTTTCAACAAGGACAGTTAC TTCATGCTCACTTATCCAAAACACCATTCCAAGCAAATGTTTACGTCGGCACTGCTCTTGTAGACTTCTATTCCAAATGC GGTCACTTAGCTGATGCTCAAAGGTCATTTACCAGCATTTTTTCACCCAATGTAGCAGCATGGACAGCTCTTATAAATGG CTATGCATATCACGGGCTTGGATCTGAGTCAATTTTACTCTTTCGCTCAATGTTAGTTCAAGGAGTTCTTCCAAATGCAG CTACTTTTGTTGCTATTCTTTCAGCCTGTAGCCACGCTGGTCTACTTAATGAAGGTTTGGAGATTTTTCACTCAATGCAA ATATGCTACAGGGTTACTCCAACAATAGAACATTACACATGCGTTGTGGACCTTCTTGGTCGATCAGGCCGTTTAAAAGA AGCTGAAGAGTTTATTAATCAAATGCCTATTGAAGCAGATGGGGTAATTTGGGGAGCTTTGCTTAATGCGTCTTGGTTCT GGAAGGACATTGAAGTTGGGGAGAGAGCTGCTGAAAAGTTGTTCAGTCTGGATCCCAACCCAATATCTGGTTTTGTCATT TTGTCCAACATGTATGCCATACTAGGTAGATGGGGGCAAAAAACAACAATTAGGAAGAGATTGCAGAGTTTGGAATTGAG AAAAGATCCAGGGTGTAGCTGGATAGAATTGAACAATAATATTCATATGTTCTCTGTAGAAGATAAAACCCATGCTTATT CTGATGTGATTTATGCAACAGTGGATCATCTGACAGCAACCATTAACTCTATTATACCCTTCAATTATATTTAG
Protein sequence (LotjaGi4g1v0069900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILFLRFCPVRNCCKRVEKFRLFTTLLRDSEPHHPHVISTNISIAHRAKTGELAEARHMFDEMPLRTVSSWNTMISGYSQ WGRYDEALALASFMHRSCVKLNEISFSAVLSSCARSGSLFLGKQVHSLLLKSGFEKFGLVGSALLYFCVRCCGIGEAELV FEELRDGNHVLWSLMLSGYVQRDMMGNAMDLFGKMPVRDVVAWTTLISGYARREDGCERALDLFRCMRRSEVLPNEFTLD CVIRICARLGALHAGKVVHGLCIKDGLDFDNSIGGALAEFYCDRDAIDDAKRVYESMGGEACLNVANSLIGGLILMGRIE EAELIFYGLRETNPISYNLMIKGYAMSSQIEKSKRLFEKMAPKNLTSLNTMISVYSKNGELDEAVKLFDKTKGERNSVTW NSMMSGYIHNGQHSEALKLYVTMRRLSVDHSRSTFSVLFRACTSLCSFQQGQLLHAHLSKTPFQANVYVGTALVDFYSKC GHLADAQRSFTSIFSPNVAAWTALINGYAYHGLGSESILLFRSMLVQGVLPNAATFVAILSACSHAGLLNEGLEIFHSMQ ICYRVTPTIEHYTCVVDLLGRSGRLKEAEEFINQMPIEADGVIWGALLNASWFWKDIEVGERAAEKLFSLDPNPISGFVI LSNMYAILGRWGQKTTIRKRLQSLELRKDPGCSWIELNNNIHMFSVEDKTHAYSDVIYATVDHLTATINSIIPFNYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 137 | 130 | 2.6E-18 | ||
| ProSiteProfiles | 36 | 66 | 31 | 5.81 | ||
| PANTHER | 37 | 123 | 87 | 1.0E-116 | – | |
| ProSiteProfiles | 67 | 101 | 35 | 10.172 | ||
| Pfam | 67 | 115 | 49 | 1.5E-8 | ||
| TIGRFAM | 70 | 102 | 33 | 2.0E-6 | ||
| ProSiteProfiles | 102 | 136 | 35 | 8.21 | ||
| PANTHER | 121 | 197 | 77 | 1.0E-116 | – | |
| Gene3D | 138 | 264 | 127 | 6.6E-20 | ||
| ProSiteProfiles | 168 | 198 | 31 | 7.684 | ||
| Pfam | 170 | 198 | 29 | 6.4E-4 | ||
| Pfam | 199 | 247 | 49 | 5.7E-9 | ||
| ProSiteProfiles | 199 | 234 | 36 | 11.016 | ||
| TIGRFAM | 201 | 236 | 36 | 5.7E-4 | ||
| PANTHER | 203 | 367 | 165 | 1.0E-116 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 5.963 | ||
| ProSiteProfiles | 270 | 304 | 35 | 5.842 | ||
| Gene3D | 270 | 365 | 96 | 3.0E-11 | ||
| SUPERFAMILY | 295 | 431 | 137 | 4.18E-6 | – | |
| Pfam | 307 | 328 | 22 | 0.77 | ||
| ProSiteProfiles | 333 | 367 | 35 | 10.315 | ||
| TIGRFAM | 335 | 360 | 26 | 4.5E-4 | ||
| Pfam | 335 | 360 | 26 | 2.4E-4 | ||
| Gene3D | 366 | 493 | 128 | 3.1E-23 | ||
| Pfam | 367 | 391 | 25 | 1.9E-6 | ||
| TIGRFAM | 367 | 390 | 24 | 6.1E-5 | ||
| ProSiteProfiles | 369 | 394 | 26 | 6.369 | ||
| PANTHER | 369 | 451 | 83 | 1.0E-116 | – | |
| ProSiteProfiles | 396 | 430 | 35 | 11.071 | ||
| Pfam | 396 | 442 | 47 | 2.0E-13 | ||
| TIGRFAM | 398 | 426 | 29 | 2.6E-6 | ||
| PANTHER | 444 | 658 | 215 | 1.0E-116 | – | |
| ProSiteProfiles | 466 | 496 | 31 | 5.261 | ||
| Gene3D | 494 | 683 | 190 | 2.4E-29 | ||
| Pfam | 496 | 544 | 49 | 8.8E-8 | ||
| ProSiteProfiles | 497 | 531 | 35 | 10.128 | ||
| TIGRFAM | 500 | 533 | 34 | 2.1E-4 | ||
| ProSiteProfiles | 532 | 562 | 31 | 7.848 | ||
| ProSiteProfiles | 568 | 598 | 31 | 7.761 | ||
| Pfam | 571 | 595 | 25 | 0.0069 | ||
| TIGRFAM | 572 | 595 | 24 | 0.0025 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0069900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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