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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0075500 |
| Transcript ID | LotjaGi4g1v0075500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Meiosis arrest female protein 1-like protein; TAIR: AT2G15560.1 Putative endonuclease or glycosyl hydrolase; Swiss-Prot: sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1; TrEMBL-Plants: tr|I1JDZ7|I1JDZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9681925..9685300) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTAACCTGTTCAGGATACGGTGAATGTCTCTCCCAACAATTCAACAAATAATCTATCTTGCCTACTTCAAAACAATG AAAACCCAAACCTACCTTGTTGAGTCTGAGTCACTCTTTACTCTTTAGGCCAAGACTAAAAATCCAGGATAAAAAGAAGT CACCGACCCAACCCAACCCAACTTCAAGCCGTACCCTTTGTTGCTTTCCTTCATTCACTTTCTTCTGCACCAGGTTCCCT CCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGATTGATCTTTGAGATCGATCATCCATTTGCTTTTTAATCACGAT CTTCAGTCACCTTCTTCCAGATTCCAGTTCGTACCTGTGTGGAGGAGCATCAGATTTGATTCGCCAAAAGCTTCTCAGCA ATTTCCCGTTTACTGCATCCAATTATTGGTACTACTCTTTTCATTTCATCACTGCCTTCTTCTTCTGAGATTTTGGGTTT TGAGTTCTGAAATTATGAAATTTTAGCTCCGATTTGGTTTTCATGAAAAGGGTTTCTGCTCAATAGCGTGAGAAATTCGG AATGTAAACTGATGCTTTCTGTTAGAATATGTTCTTTTTCTGATGGAATTTCTTTGCTTTGAAATTTGTCTTGCTAGAAC TAGGTTTGTTGTGGAAGTTGGCATTTTTTACTGGTTACGCTTTTTGATTACTCTGTTGTAAGGGTAGGTGGTGGAAGTTG CATAAAGTATGTTTCTTTTGATTTGGGTTGTTGTTAGTTTTATTTCAATGGATTTTTGGAATCTTGATTTGATGTATGAT GTGGTGTGTGGTGAGGGTTCGGGATATTCGTTGTGGAGTTATGTGGATTTCTATCAGTGCATCTGTAAGTGATTATGGAC CCATGTAATGCTGGAGATGTGAGCAAGGCTCGGCAATGATCTTGTTCCATGAAATGACAGCACATTAAGTTAGTGATGTT TGGAAATCATTTTATGTTTTGTGGTTTCTTTCAGAATCATTGTTTTTGGGGGTTGTTCAAGAATATTTGTAGTTCTTAGT TTGGTAGCCTTACCATTGTTTTTGCATCCTGCAATCTGTGAACTAGATTAACGTTGCGTCGGCCTTCTTTGACACCCAGG CAGCCCTGCTTCTTGATCTTGTGGGTTGTAGCCCGTGTTTATAGTTATTTGAGACTCTTAACCTGCTTCTGACTGAAGAA AACTGTGTTTTTTCATAGTTCTGCGGGTTTTGTTTCTCTTAACTTATATGGTGTTATGAATATGTGTATGTTGATGCTTA TGGCTAGGATATACATGCCTATAACCTTACCTTCTCACTATCTTGTATGAAATTGTTTATGGGGATTTGTTTTGTTTAGT GATGTTTTCACTTCATTTTGTGCAGGAAGTCTTGGTTTTCTATTATATTGATGGCCACCCCAAGTAAATCAGCACCAATA ATGTCTTCAGACTCCTTCGAACAGAATGGGAAAATTATTGAATCAAATGCAAACATGCTTCAATGTCCTATAAACCAGCA ACACCGTAACTCCTTAGATGGCCCTGTAGCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGTCCTG AAGATGTAGCAGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATTACAGGAGCTGTTATGTTGTTTTCTGCTTAT GGGGACTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGCGAACTGGTGTTAAACTCATTGATGTTCCCAATGG GAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCA TGCTAATATCTGGAGATGTTGATTTTGCCCCTGCGCTTCACATTCTTGGTCAGCGGGGATATACAATAATTCTTGTCATC CCCGCTGGGGTGGGTGTTTCATCTGCGTTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGCGTGTCTCGTGGAGA AGGCTTTGTTCCTCCCTCTAGGGGTTTATTTCCACCCCGTGGAGGTCCAATGGAGCTTGCTGGATATTTCACGGGGTACC ATATCAACGAAAACTCTGAAGGAGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGCTATTATAAC TCGAGGGAATTCTCGCTTGTGTCACAGTCTCTATCTGAATACAACACAGCAAACATGCAGTGCTTGCCGGGAACTCTGAG ATCGTATAGCCTTCCATCAGGAATAAATGATGTTGCAGGAGGAGCTATGCCTTCTAGTGACCATACTGAAGACCCGATAT GGGTGCAACCTGGGGATTTAAATGGTCTCAAGGGTCAGATGGTAAGGTTGCTCGAACTTTTTGGAGGATACCTGCCTCTG ACCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATATATCTGAATACGGAGCAATGAAGTTGGTCAA TCTTTTCAAGAAGATGGGCGATACCATGGCTGTGGAAGGAAAAGGGCAAAGAAAATTTGTGTATCTCAGGAACTGGAAGA CCAGCCCAAGTGCTCCTCCACTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAGGGGCGCAGGAAGAGAATGCAAACGTT GTCACTGGTGGCTGCTCTTCTGATGAGTTCTCAGATGAAGAAAGAGTAGTCGTTGAAGAACACGATGGGAGAAGTTGCAG AGGGAAAGGTAACCAGGCGAGAGAATCCAGTTTTGAAATTGATGATCGTATTCTTGAGCAGTTCAAGTGCGAGCTGCAAG AGATCCTAGTCAGTTATTCTTGTCGAATATCCTTTGATTGTTTCGAGGATATATACAAGCAACGGTACAAGAAAAAACTG GAGTATCAGAGATTTGGGGTGGACAAGTTAGAGGATTTGTTGCAGGAAGTGAGTGATGTGGCAGTATTGCACGAGGAACC CGTAAGCAAGAAGAAGTTTCTGGCCGCCGTGGGTGGTTAGAAAACTTGTGCAAGAGAGTGTTGTTTGTTTTAACCTTTCT GGCATTTATAACTTAAATGTTTACCACGAATGGTCAGCAAACACATGATCTCCCTTGCAAGCTCTTCGATTTCAGTTTCT TTATGCCTCTGTAGTCTTGTAAATTTTATATGCTGGGCGCACGTGTTTTTTTATAGTCACTGTCCTGCATTTATTTGAAT CTTTTGTAAAATGTCTGTGTTGCTTATTTCCAGTATCTGCAACAGATTACTTATAAAAGTTGGGAGAATATTTAAAATTA GTAGCCTTTCTACTTCTATCCTGTATCCAATTTCAATATCTATGTACAATTTTCCCATGCATGTTGACTTGACAAGATAC TGATTACTAGTTGAAC
CDS sequence (LotjaGi4g1v0075500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCCCAAGTAAATCAGCACCAATAATGTCTTCAGACTCCTTCGAACAGAATGGGAAAATTATTGAATCAAATGC AAACATGCTTCAATGTCCTATAAACCAGCAACACCGTAACTCCTTAGATGGCCCTGTAGCTATCCTTTGGGATATTGAAA ATTGTCCTGTTCCAAGTGATGTACGTCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATT ACAGGAGCTGTTATGTTGTTTTCTGCTTATGGGGACTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGCGAAC TGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTG CTCTTGACAACCCTCCACCATCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCCCCTGCGCTTCACATTCTTGGT CAGCGGGGATATACAATAATTCTTGTCATCCCCGCTGGGGTGGGTGTTTCATCTGCGTTATGCAATGCTGGTAAATTTGT CTGGGACTGGCCTAGCGTGTCTCGTGGAGAAGGCTTTGTTCCTCCCTCTAGGGGTTTATTTCCACCCCGTGGAGGTCCAA TGGAGCTTGCTGGATATTTCACGGGGTACCATATCAACGAAAACTCTGAAGGAGGACAAAATGAAGAAGAAGCAATAGTT TATAGAGGGATGTCACAGAGCTATTATAACTCGAGGGAATTCTCGCTTGTGTCACAGTCTCTATCTGAATACAACACAGC AAACATGCAGTGCTTGCCGGGAACTCTGAGATCGTATAGCCTTCCATCAGGAATAAATGATGTTGCAGGAGGAGCTATGC CTTCTAGTGACCATACTGAAGACCCGATATGGGTGCAACCTGGGGATTTAAATGGTCTCAAGGGTCAGATGGTAAGGTTG CTCGAACTTTTTGGAGGATACCTGCCTCTGACCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATAT ATCTGAATACGGAGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATACCATGGCTGTGGAAGGAAAAGGGCAAA GAAAATTTGTGTATCTCAGGAACTGGAAGACCAGCCCAAGTGCTCCTCCACTGTCTCTTGCAAAGAAAGATAAGAAAGGA AAAGGGGCGCAGGAAGAGAATGCAAACGTTGTCACTGGTGGCTGCTCTTCTGATGAGTTCTCAGATGAAGAAAGAGTAGT CGTTGAAGAACACGATGGGAGAAGTTGCAGAGGGAAAGGTAACCAGGCGAGAGAATCCAGTTTTGAAATTGATGATCGTA TTCTTGAGCAGTTCAAGTGCGAGCTGCAAGAGATCCTAGTCAGTTATTCTTGTCGAATATCCTTTGATTGTTTCGAGGAT ATATACAAGCAACGGTACAAGAAAAAACTGGAGTATCAGAGATTTGGGGTGGACAAGTTAGAGGATTTGTTGCAGGAAGT GAGTGATGTGGCAGTATTGCACGAGGAACCCGTAAGCAAGAAGAAGTTTCTGGCCGCCGTGGGTGGTTAG
Protein sequence (LotjaGi4g1v0075500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPSKSAPIMSSDSFEQNGKIIESNANMLQCPINQQHRNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVI TGAVMLFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILG QRGYTIILVIPAGVGVSSALCNAGKFVWDWPSVSRGEGFVPPSRGLFPPRGGPMELAGYFTGYHINENSEGGQNEEEAIV YRGMSQSYYNSREFSLVSQSLSEYNTANMQCLPGTLRSYSLPSGINDVAGGAMPSSDHTEDPIWVQPGDLNGLKGQMVRL LELFGGYLPLTRVPAEYQKIYGRPLYISEYGAMKLVNLFKKMGDTMAVEGKGQRKFVYLRNWKTSPSAPPLSLAKKDKKG KGAQEENANVVTGGCSSDEFSDEERVVVEEHDGRSCRGKGNQARESSFEIDDRILEQFKCELQEILVSYSCRISFDCFED IYKQRYKKKLEYQRFGVDKLEDLLQEVSDVAVLHEEPVSKKKFLAAVGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 525 | 491 | 8.4E-147 | ||
| PANTHER | 35 | 525 | 491 | 8.4E-147 | – | |
| CDD | 45 | 171 | 127 | 1.39099E-53 | – | |
| Pfam | 45 | 185 | 141 | 3.5E-27 | ||
| ProSiteProfiles | 309 | 381 | 73 | 13.804 | ||
| Gene3D | 309 | 378 | 70 | 1.8E-7 | ||
| CDD | 310 | 379 | 70 | 4.95592E-13 | – | |
| Pfam | 313 | 376 | 64 | 9.0E-8 | ||
| MobiDBLite | 389 | 408 | 20 | - | – | |
| Gene3D | 450 | 526 | 77 | 5.5E-12 | ||
| ProSiteProfiles | 454 | 528 | 75 | 15.916 | ||
| Pfam | 454 | 517 | 64 | 5.3E-8 | ||
| CDD | 455 | 517 | 63 | 5.41117E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Peroxisome | A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. | ||
| Biological process | Regulation of gene expression | Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. |
Expression pattern of LotjaGi4g1v0075500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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