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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078400 |
| Transcript ID | LotjaGi4g1v0078400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|I1ND75|I1ND75_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10226994..10230638) extracted from Lotus japonicus Gifu genome v1.2.
ATGATAAGCTGGGGAGATCTATACACCGTGTTAACGGCGGTGATTCCGCTGTACGTGGCTATGATCCTAGCGTACGGCTC TGTCCGGTGGTGGAAGATTTTCTCCCCGGACCAGTGCTCCGGCATAAACCGTTTCGTGGCGATCTTCGCTGTGCCGCTGC TCTCCTTCCACTTCATCTCCACCAACAACCCGTACACCATGAACCTCCGGTTCATCGCCGCCGACACGCTGCAGAAGGTG ATCATGCTGTTCGCACTCACAATCTGGACCAATTTCACCGCCAACGGCAGCCTGGAGTGGATGATCACCATCTTCTCCCT GTCCACATTGCCCAACACGCTTGTCATGGGAATTCCACTCCTCATCGCCATGTACGGCGAATACTCCGGCGAGCTTATGG TCCAGGTGGTGGTCCTCCAGTGCATCATTTGGTACACGCTGCTCCTCTTCCTCTTCGAGTACCGTGGCGCGAAGCTTCTG ATCATGGAGCAATTCCCGGAAACTGCAGCTTCCATTGTCTCCTTCAAGGTCGACTCCGATGTCGTTTCCCTTGACGGTAG AGACTTTCTCGAGACTGACGCGGAGGTTGGCGACGACGGCAAGCTCCACGTCACCGTGAGAAAGTCCAACGCGTCGAGGA GGTCGTTCATGATGAATACACCGCGGCCGTCGAATCTCACCGGAGCTGAGATATACAGCCTCAGCTCCTCCCGGAACCCC ACGCCGCGAGGTTCCAATTTTAACCACGCAGATTTCTACTCCATGATGGGGTACGCGCCGCGGCACTCGAACTTCGCCGC CGGCGATGTTTACTCCGCCGCGTCAAAAGGCCCCACGCCGCGGCCGTCCAATTTCGAGGAGAATTGTGGCGCGAGCTCGC CGAGATTCGGGTTCTACCCGGCACCATCGCAGACAGTTCCGCCGCCGACGTCTTACCCGGCTCCGAACCCAGAACTTATC TCCACCGGGTTGACAAAGAGTGTGAGCAAGAATTCTCAGTCACAGTTACAGTCATCACAGTCACAGCAGTTGATTCAGCC TAATCAACCACCATCCACAAACGGCGCTAAATTGAGCCACGACGCGAAAGAACTCCACATGTTTGTGTGGAGCTCTAGCG CGTCACCGGTCTCTGACGTGTTTGGAGGCGGTGATTACGGACCGTCCGATCAATCCGGACGGTCTGAACAGGGTGCCAAG GAGATTAGAATGTTGGTTCCTGATGAACAACCTCAGAATGGGGTTACTAATAAAGGTACTTGAATTTTCAATTTTTCCAA TTTTTTCTTCTTGGATTATAAAATTGATAATGATTTTGATTTTGTGGTTTTTTTGGTTTAAATTTGAAGCTATGGCTGAG CCAGAATTTGGAGGAGATGATTTAAAATTTGCTGTTAAAGAAGGAGAACAAGCTGAGGATCACTTAGATGGAGAGAAAGG GGGACCCACTGGGCTGAACAAGCTAGGTTCAAGTTCCACGGCGGAGCTCCACCCGAATGCTGCCGGAGCTGCCGGCGTGA AACACATGCCTCCGGCGAGTGTTATGACCCGCCTCATATTGATCATGGTGTGGAGGAAGCTAATCAGAAACCCCAACACA TACTCTAGCCTCATTGGTGTCATTTGGTCCCTTGTGGCATTTAGGTAAAAAAAAATTCAAAGTCAATCAGAAATTATTTA ATTTTTGACTTTTTTGCATTTTGAATTTATTATTATTACTGTGGGGTGATTATTTATTTAGTTAATGTTTAATGAATTGC AGGTGGCATGTGCGTATGCCGAAAATAATACAGCAATCAATCTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTT TAGCTTAGGTGAGTTGAGTGGTCACCGTTTTTCCCAATCTTTACTCCTACAATAATTTCATTCTTTTCTTTATTCTGCAA CTCATTTCCTCTTCTATGAAAACAACAGTAACTCCCATTTTCTAGGGTAGATAGTTGGATACGTATATTTTCTTACAATC CAAGAAAGTAGTTAAAACCTACCTACGGGTTTCTCTTCCTATTTTAGTTATCAAATTCAAGAGTAGTGATTAATGTGAAC TTTAGGTGTCAATAATTTCTACTTGCGTGTAACGTGTTACTTTTCTTCTCATCTTTAGAAAAAATTGTGTTCAAAATGTA AAACCAAACACCCACTTAATGGTACTAAAACATGTGATCATTTTTCTTATTACAATCACAATACGATGAACGGGGTACAA CGGCACTTGATTGAATGTGATGGTAACATGGGTATGAAAATTATGGATTTGGAGGAAACAAGTAAGCAAATCACAACCGT CCATTCTCATGAAATTGGTTGCCACATAACATAACCAAATGACCTTGTTGGGTAGACGATAGTGTGGGGATTGCATTTGC ATAACGATCCCCGACATGTGGGGTCTGGTCATGAACCAATTCGCTTTCTGATTCAAGGCGGTGGTGAGGAAAGGTACAAA TTTTGGACCAAAATTCGGTAAAGGTTGAAATGGACAAATTATGAGGCAGCATAATAACTATCTTTTGTTTTTCAGTGAGA AAACTGAAAGGCATTTTTGCCATGTTGATGTGAATGTAAATTGTGGGTGTCTTCTAGTTTTTATCGTTTTCCCTTTTGGC TGAATCTATTGAGGATTTATTTGTTGGGTTTGTGACATTTGCAGGCTTGTTTATGGCTCTTCAACCCAAGATGATTGCAT GTGGGAACTCAGTGGCTACATTTGCTATGGCTGTTCGATTTCTTACAGGTCCTGCAGTTATGGCAGCAGCTTCCATTGCT GTTGGCCTGCGTGGCACCCTCTTACGTATAGCTATTGTTCAGGTACACTTATTATTGACAAGCTTCTTCCCTCTCTACGA CACACTAAAACATAAACTTTATGATCAGTAACTTAACTATATATATATATATAGAGAAAAAGAAATAATAAATAATAAAC ATTAGAATAAGAACATTTAAATTGACTCATAATTAAAAAATCTGGTAAAGATAACATTTATGTCATCTGAAATCTTGTGG GATGGAAAAAACTCATAATTAATTAATGATCACCTCACTTGATAACAAAATAAGTGAATTAGGATTATTCTCGATCCGTA ATGATCGTGACGCGAAGCTCTATCATCCACACATTTGTCATCCACATCATTAGTACACGATCGAATTTTTTACAACGGTG ACTGAAATCAAAGTTATTAGTATAAGATTAGGGATTAAAACTATAAAAATTAGATTTTAGTGAGCAAAACTAAATTTGAG GGACTAAAAATTAGTTCAGCTTTATTTTAGTTATATGAATAATATTTCTTGTTATATTAAACATGAAACACAAACCTTTT AGATTGTTAGCTCACTGAAATATAATTGTTGGAAATAGGCTGCACTTCCTCAAGGAATTGTTCCATTTGTGTTTGCCAAG GAGTACAATGTCCATCCGGCCATTCTTAGCACAGGGTAAGCAATTATACTTGTTTTATTCTGTTTAATTTCTCATTCTTT CTCTTAAGAAATTAGGAAGTTGACCTTTTTTTTCTAAAATGTAAAATTTTCATTGCAGGGTTATATTTGGGATGTTGATA GCTCTACCAATTACACTAGTGTACTACATATTACTTGGTTTGTAA
CDS sequence (LotjaGi4g1v0078400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAGCTGGGGAGATCTATACACCGTGTTAACGGCGGTGATTCCGCTGTACGTGGCTATGATCCTAGCGTACGGCTC TGTCCGGTGGTGGAAGATTTTCTCCCCGGACCAGTGCTCCGGCATAAACCGTTTCGTGGCGATCTTCGCTGTGCCGCTGC TCTCCTTCCACTTCATCTCCACCAACAACCCGTACACCATGAACCTCCGGTTCATCGCCGCCGACACGCTGCAGAAGGTG ATCATGCTGTTCGCACTCACAATCTGGACCAATTTCACCGCCAACGGCAGCCTGGAGTGGATGATCACCATCTTCTCCCT GTCCACATTGCCCAACACGCTTGTCATGGGAATTCCACTCCTCATCGCCATGTACGGCGAATACTCCGGCGAGCTTATGG TCCAGGTGGTGGTCCTCCAGTGCATCATTTGGTACACGCTGCTCCTCTTCCTCTTCGAGTACCGTGGCGCGAAGCTTCTG ATCATGGAGCAATTCCCGGAAACTGCAGCTTCCATTGTCTCCTTCAAGGTCGACTCCGATGTCGTTTCCCTTGACGGTAG AGACTTTCTCGAGACTGACGCGGAGGTTGGCGACGACGGCAAGCTCCACGTCACCGTGAGAAAGTCCAACGCGTCGAGGA GGTCGTTCATGATGAATACACCGCGGCCGTCGAATCTCACCGGAGCTGAGATATACAGCCTCAGCTCCTCCCGGAACCCC ACGCCGCGAGGTTCCAATTTTAACCACGCAGATTTCTACTCCATGATGGGGTACGCGCCGCGGCACTCGAACTTCGCCGC CGGCGATGTTTACTCCGCCGCGTCAAAAGGCCCCACGCCGCGGCCGTCCAATTTCGAGGAGAATTGTGGCGCGAGCTCGC CGAGATTCGGGTTCTACCCGGCACCATCGCAGACAGTTCCGCCGCCGACGTCTTACCCGGCTCCGAACCCAGAACTTATC TCCACCGGGTTGACAAAGAGTGTGAGCAAGAATTCTCAGTCACAGTTACAGTCATCACAGTCACACCACGACGCGAAAGA ACTCCACATGTTTGTGTGGAGCTCTAGCGCGTCACCGGTCTCTGACGTGTTTGGAGGCGGTGATTACGGACCGTCCGATC AATCCGGACGGTCTGAACAGGGTGCCAAGGAGATTAGAATGTTGGTTCCTGATGAACAACCTCAGAATGGGGTTACTAAT AAAGCTATGGCTGAGCCAGAATTTGGAGGAGATGATTTAAAATTTGCTGTTAAAGAAGGAGAACAAGCTGAGGATCACTT AGATGGAGAGAAAGGGGGACCCACTGGGCTGAACAAGCTAGGTTCAAGTTCCACGGCGGAGCTCCACCCGAATGCTGCCG GAGCTGCCGGCGTGAAACACATGCCTCCGGCGAGTGTTATGACCCGCCTCATATTGATCATGGTGTGGAGGAAGCTAATC AGAAACCCCAACACATACTCTAGCCTCATTGGTGTCATTTGGTCCCTTGTGGCATTTAGGTGGCATGTGCGTATGCCGAA AATAATACAGCAATCAATCTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGCTTGTTTATGGCTC TTCAACCCAAGATGATTGCATGTGGGAACTCAGTGGCTACATTTGCTATGGCTGTTCGATTTCTTACAGGTCCTGCAGTT ATGGCAGCAGCTTCCATTGCTGTTGGCCTGCGTGGCACCCTCTTACGTATAGCTATTGTTCAGGCTGCACTTCCTCAAGG AATTGTTCCATTTGTGTTTGCCAAGGAGTACAATGTCCATCCGGCCATTCTTAGCACAGGGGTTATATTTGGGATGTTGA TAGCTCTACCAATTACACTAGTGTACTACATATTACTTGGTTTGTAA
Protein sequence (LotjaGi4g1v0078400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISWGDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNNPYTMNLRFIAADTLQKV IMLFALTIWTNFTANGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGELMVQVVVLQCIIWYTLLLFLFEYRGAKLL IMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEVGDDGKLHVTVRKSNASRRSFMMNTPRPSNLTGAEIYSLSSSRNP TPRGSNFNHADFYSMMGYAPRHSNFAAGDVYSAASKGPTPRPSNFEENCGASSPRFGFYPAPSQTVPPPTSYPAPNPELI STGLTKSVSKNSQSQLQSSQSHHDAKELHMFVWSSSASPVSDVFGGGDYGPSDQSGRSEQGAKEIRMLVPDEQPQNGVTN KAMAEPEFGGDDLKFAVKEGEQAEDHLDGEKGGPTGLNKLGSSSTAELHPNAAGAAGVKHMPPASVMTRLILIMVWRKLI RNPNTYSSLIGVIWSLVAFRWHVRMPKIIQQSISILSDAGLGMAMFSLGLFMALQPKMIACGNSVATFAMAVRFLTGPAV MAAASIAVGLRGTLLRIAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 628 | 628 | 9.6E-165 | ||
| PANTHER | 1 | 628 | 628 | 0.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 628 | 628 | 0.0 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 9 | 623 | 615 | 1.2E-195 | ||
| Phobius | 29 | 39 | 11 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 40 | 59 | 20 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| Phobius | 71 | 92 | 22 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 93 | 103 | 11 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 104 | 126 | 23 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 485 | 333 | - | – | |
| MobiDBLite | 296 | 322 | 27 | - | – | |
| MobiDBLite | 301 | 315 | 15 | - | – | |
| MobiDBLite | 422 | 445 | 24 | - | – | |
| Phobius | 486 | 503 | 18 | - | – | |
| Phobius | 504 | 514 | 11 | - | – | |
| TMHMM | 513 | 535 | 23 | - | – | |
| Phobius | 515 | 534 | 20 | - | – | |
| Phobius | 535 | 545 | 11 | - | – | |
| TMHMM | 545 | 567 | 23 | - | – | |
| Phobius | 546 | 568 | 23 | - | – | |
| Phobius | 569 | 573 | 5 | - | – | |
| TMHMM | 572 | 594 | 23 | - | – | |
| Phobius | 574 | 594 | 21 | - | – | |
| Phobius | 595 | 600 | 6 | - | – | |
| Phobius | 601 | 625 | 25 | - | – | |
| TMHMM | 604 | 626 | 23 | - | – | |
| Phobius | 626 | 628 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0078400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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