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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0080000 |
| Transcript ID | LotjaGi4g1v0080000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G23030.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10; TrEMBL-Plants: tr|I1KM32|I1KM32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0080000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10439397..10442633) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGATTCAGCACTCTTTGTACGTGTCGACACTTGATAAGTCTCATCACACACCTTAATTGGACTCCCCCTGACCCTTC TTCCTCCTCCCTCCCAACACAAACCGAGACAGCAGCCGAAATGGCCGCCGGCGACCTCGCCGGAGATCGCACGCCGGAGC TTCTGCGTCTCATCCACGACATCACCGGAATCTGCACCGTCTCCTCCGACGCCTCGTTCAGGAAGGACTGCACCGATCTT GTTCGCCGGATCTCGCTGCTCACCCACTTGTTCGACGAGGTTAAGGACTTGAGCTCCGATTCGAGCTGCTCCGGTGCTGG TTCTGCTTCTGCCGTGGCTTCGTGGTCGTCTGATCTGGTTGTTGCTCTTCACTCCGCTAAGCGCTTGCTCTCTGTTGCTA GGAATTTTCGTTCCAATTGCTCTTCGGTGAGTGTCTCGATCTTACACGCTTGTTGTTTTCATGCATCAGAGGTTCAGCAA AACCTCACACATTTGCATAATTGGATGTAGTTTCGTCAATTTTGCTTGATTTTTCAGTAGTTCAGATCTGTAGTTCACGC AGCTGAAAAGGTTCTGAACTTTTCTTCTCTGATGAAATTTCACTGCTTTCCTTGAAGGAATGCTAGTTTCAATTTGATGA ACTGAGAATGAATTATACAAGATTTATATTTTGGGGGTTTTTTAATTTGCTTAATTTGTTTTTTCTGTGATTGGTTGAGT CTGCAACTTTTAGTGTTGATCTAGCATATGATAAAGTTTCAAACTTGCCATCTGCTATAGTGTTCATTATTTCTTATTTG AGTCGATATTCGATGAAATGATTCAAGTTTTATAGGATTTGAATCCATTCCTAAATGGGTGTGCAATGAAATCACTATAT GTTGTCATCTTTTATTGGCTGCTGATTGCTTGCTCTCATGTTCACTATAATGTTTTATTGACGGGGATTGATTTCGGTTA AGCATTTTGTGTGTTGTTGTTTGTGACTGTCAAGGTTCATTGTAACATCATAATCTTTAAATAGAGATGACTTTGCATTT CTCTGATTTTGTAACTTGGAATCTTACAACTGCTAAATTTCTGTGGTCATAAAGGGTGTCTGTGTAGATCTCTGAAATTT TATATATCTTGATTTAAGGATGGATCGGCCAAGACCATTGTCTACCAATTTCAGTGCGTGACGTGGAAATTGGAAAAACT GCTAAGCCACTTACCATATGACGATTTAGACATATCAGAGGAAGTCAAAGAACAGGTATAGTTTGGATAAATGTGGTTTT TTCTTTCATTACTCTAACGGTTTTACCTGCAAGTTCATGAGTTAATTGTGTGATATTATCTTCTTTTTAGGTGGATTTGG TGAGAACACAATTAAGACGGGCCACGGAAAAATATGGGTATATGATTTCAAAAATGCCATCTTATGAATTATCCCAGCCC CTGGCTCGAGAAATTAGTCCGGCTCTTGGCAAATCCGTGATTGGGTTGCATAAACAAAACAGCTGTCCTGAAAATTTATC AGAACTAGACAGCATTCCTGAAAACAAAGGAGAGAAAAGTTGCAGTGCAAATGGAGCAGGATCTCGATTAGAAAGAACAA GGACCTTTTCTGTAGTCCCCTTATCGAATGTAACTATTGATCCTGACAGTCAAGGAATTTCTGAGAGAAAGAACCAACCT CAGATTAAGAAGCCTGAAGCAATTGTATTTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTGATGAGGGATCCTGT TATTGTGTCCACCGGTCAGGTGAGTTCATTTTAGACGCTGCGTTATATACAAGGCATTTTTTCCTGTGAAGTTTTCACCT CATCTATATTTCTTGATTTTTTTTTCTGCAGACTTATGAGAGATCTTACATACAAAGATGGATAGATTGTGGACATCTAA CGTGTCCAAAAACTCAGCAGAAGCTCGAACATTTCACCCTTACACCCAATTATGTTTTAAGGAGCCTTATTACTCAATGG TGTATGGAGCACAACATTGAGCAGCCAACAGGATTAACTAATGGCAAACTAAAAAAAAGTGATGGATCGTTCATAGATGT TACAGGTGACATAGCAGCCATCGAAGCTCTAGTCCGCAAGCTCTCGAGCCGGTCCATTGAAGAGCGCAGAGAAGCTGTTG CTGAAGTTCGATCACTGTCCAAACGGAGTACTGAAAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTCCTAGTC AACCTTTTGACATCAGAAGATGCATTGACACAAGACAATGCAGTTACTTCAATCCTCAACCTTTCTATATATGAAAACAA CAAGGGACTTATAATGCTTGCTGGTGCCATTCCGTCCATTGTCCAAGTCCTCCGAGCCGGTACCATGGAAGCAAGAGAAA ATGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCTGATGAGAACAAAATAATAATTGGTGCCTCAGGGGCCATACCCGCT TTGGTAGAATTGCTCCAAAATGGGAGCTCTAGAGGGAAGAAGGATGCTGCAACAGCATTGTTCAATTTATGCATTTATCA AGGAAACAAGGGCAGAGCCATCAGGGCAGGGATCATCACAGCTTTGTTGAAGATGCTTACAGATACAAGCAAATCAATGA TTGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCAATAGTGAAAGCCAGCACTATA CCAGTTTTGATAGATCTTTTACGGACAGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTTTACTTGCCTTGTGCAA GAGGGATGCTGAAAATCTTGCTTGTATAAGTAGACTTGGTTCTGTCATCCCTCTTACTGAACTTACTCGAACCGGTACTG AGAGGGCCAAACGAAAGGCTACCTCATTGTTGGAGCATCTTCGCAAGTTACAGCAGCTTTGAATGGTGTAGTTCTGCACA CAACTTGTAATTTTATGTCTTTTCCTCTGATTATTTGACAATTTTTCACACAACGGTTTGCAAACTGACCATATGAGGCT GAAATAAGAAAGCAAGCCTCGTTGGTTTCAGTTTATTCTTTCCTTCTTTTCTGTTTGCTCCTTTGTAACCCCTGTATGAG CGTGTAAAGAAATCAATTCATATATTATTTCCTTAATGAAATCCACACAATTTATGTTTTTCTGTATGGCTTTGTTGAAA ATATTTACTATATACAATGAGCTTCTAGCCCTTCTAC
CDS sequence (LotjaGi4g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCGGCGACCTCGCCGGAGATCGCACGCCGGAGCTTCTGCGTCTCATCCACGACATCACCGGAATCTGCACCGT CTCCTCCGACGCCTCGTTCAGGAAGGACTGCACCGATCTTGTTCGCCGGATCTCGCTGCTCACCCACTTGTTCGACGAGG TTAAGGACTTGAGCTCCGATTCGAGCTGCTCCGGTGCTGGTTCTGCTTCTGCCGTGGCTTCGTGGTCGTCTGATCTGGTT GTTGCTCTTCACTCCGCTAAGCGCTTGCTCTCTGTTGCTAGGAATTTTCGTTCCAATTGCTCTTCGGATGGATCGGCCAA GACCATTGTCTACCAATTTCAGTGCGTGACGTGGAAATTGGAAAAACTGCTAAGCCACTTACCATATGACGATTTAGACA TATCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTAAGACGGGCCACGGAAAAATATGGGTATATGATT TCAAAAATGCCATCTTATGAATTATCCCAGCCCCTGGCTCGAGAAATTAGTCCGGCTCTTGGCAAATCCGTGATTGGGTT GCATAAACAAAACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTGAAAACAAAGGAGAGAAAAGTTGCAGTG CAAATGGAGCAGGATCTCGATTAGAAAGAACAAGGACCTTTTCTGTAGTCCCCTTATCGAATGTAACTATTGATCCTGAC AGTCAAGGAATTTCTGAGAGAAAGAACCAACCTCAGATTAAGAAGCCTGAAGCAATTGTATTTCCTGAAGATTTTCTTTG CCCTATATCCTTGGAACTGATGAGGGATCCTGTTATTGTGTCCACCGGTCAGACTTATGAGAGATCTTACATACAAAGAT GGATAGATTGTGGACATCTAACGTGTCCAAAAACTCAGCAGAAGCTCGAACATTTCACCCTTACACCCAATTATGTTTTA AGGAGCCTTATTACTCAATGGTGTATGGAGCACAACATTGAGCAGCCAACAGGATTAACTAATGGCAAACTAAAAAAAAG TGATGGATCGTTCATAGATGTTACAGGTGACATAGCAGCCATCGAAGCTCTAGTCCGCAAGCTCTCGAGCCGGTCCATTG AAGAGCGCAGAGAAGCTGTTGCTGAAGTTCGATCACTGTCCAAACGGAGTACTGAAAATAGGATACTAATTGCTGAAGCT GGAGCAATTCCAGTCCTAGTCAACCTTTTGACATCAGAAGATGCATTGACACAAGACAATGCAGTTACTTCAATCCTCAA CCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCGTCCATTGTCCAAGTCCTCCGAGCCG GTACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCTGATGAGAACAAAATAATAATTGGT GCCTCAGGGGCCATACCCGCTTTGGTAGAATTGCTCCAAAATGGGAGCTCTAGAGGGAAGAAGGATGCTGCAACAGCATT GTTCAATTTATGCATTTATCAAGGAAACAAGGGCAGAGCCATCAGGGCAGGGATCATCACAGCTTTGTTGAAGATGCTTA CAGATACAAGCAAATCAATGATTGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCA ATAGTGAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTACGGACAGGATTGCCTCGCAATAAAGAGAATGCAGCTGC TATTTTACTTGCCTTGTGCAAGAGGGATGCTGAAAATCTTGCTTGTATAAGTAGACTTGGTTCTGTCATCCCTCTTACTG AACTTACTCGAACCGGTACTGAGAGGGCCAAACGAAAGGCTACCTCATTGTTGGAGCATCTTCGCAAGTTACAGCAGCTT TGA
Protein sequence (LotjaGi4g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGDLAGDRTPELLRLIHDITGICTVSSDASFRKDCTDLVRRISLLTHLFDEVKDLSSDSSCSGAGSASAVASWSSDLV VALHSAKRLLSVARNFRSNCSSDGSAKTIVYQFQCVTWKLEKLLSHLPYDDLDISEEVKEQVDLVRTQLRRATEKYGYMI SKMPSYELSQPLAREISPALGKSVIGLHKQNSCPENLSELDSIPENKGEKSCSANGAGSRLERTRTFSVVPLSNVTIDPD SQGISERKNQPQIKKPEAIVFPEDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGHLTCPKTQQKLEHFTLTPNYVL RSLITQWCMEHNIEQPTGLTNGKLKKSDGSFIDVTGDIAAIEALVRKLSSRSIEERREAVAEVRSLSKRSTENRILIAEA GAIPVLVNLLTSEDALTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIG ASGAIPALVELLQNGSSRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDTSKSMIDEALTIMSVLASHQEAKVA IVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDAENLACISRLGSVIPLTELTRTGTERAKRKATSLLEHLRKLQQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 639 | 616 | 0.0 | – | |
| PANTHER | 24 | 639 | 616 | 0.0 | – | |
| Coils | 135 | 155 | 21 | - | – | |
| ProSiteProfiles | 260 | 334 | 75 | 41.117 | ||
| Gene3D | 261 | 335 | 75 | 2.6E-27 | ||
| SUPERFAMILY | 261 | 335 | 75 | 6.71E-30 | – | |
| Pfam | 262 | 332 | 71 | 5.6E-20 | ||
| SMART | 264 | 327 | 64 | 6.6E-34 | ||
| CDD | 265 | 307 | 43 | 1.28257E-27 | – | |
| Gene3D | 339 | 454 | 116 | 7.3E-18 | – | |
| SUPERFAMILY | 360 | 634 | 275 | 1.54E-44 | ||
| Pfam | 390 | 429 | 40 | 8.9E-9 | ||
| SMART | 390 | 430 | 41 | 0.023 | ||
| ProSiteProfiles | 401 | 443 | 43 | 10.902 | ||
| SMART | 431 | 471 | 41 | 9.3 | ||
| ProSiteProfiles | 442 | 484 | 43 | 9.537 | ||
| Gene3D | 455 | 540 | 86 | 7.2E-17 | – | |
| SMART | 472 | 512 | 41 | 2.7E-5 | ||
| Pfam | 473 | 511 | 39 | 6.9E-9 | ||
| ProSiteProfiles | 483 | 525 | 43 | 9.327 | ||
| SMART | 513 | 553 | 41 | 21.0 | ||
| Gene3D | 541 | 639 | 99 | 3.2E-13 | ||
| SMART | 554 | 594 | 41 | 39.0 | ||
| Coils | 620 | 640 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0080000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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