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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0089800 |
| Transcript ID | LotjaGi4g1v0089800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein N-methyltransferase; TAIR: AT1G14030.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A072UM69|A0A072UM69_MEDTR Rubisco large subunit N-methyltransferase; Found in the gene: LotjaGi4g1v0089800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11912219..11916168) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAGAACAAGGCTCAACTCAACACAACCAACCCAACACAACACAACAGTGTACACAAAACAAAAGCAGTAATGGCTA GTGCTTTATCTGTAGGTTCAGGCTGTGCTTTTCCCTTTCACAACAACACCTCCTTGTCCATGGCAGCCAAACCGTCACTC CTTCAGCTGAAGAAGCCTTTCGCTTCTATAGGAACCGAAACAACACCGGCGGTGTCTCCGGCAGTTCAAACCTTCTGGCA GTGGCTGAAGGAAGAAGGCGTTATCTCTGCCAAGACACCAGTGAAACCTGGTGCAGTCCCTGAAGGCCTTGGTCTAGTTG CCGTGAAAGACATTTCAAGAAACGACGTGGTTTTGCAGGTGCCCAAGAGGCTCTGGATAAACCCTGATGCTGTTGCAGCT TCAGAGATAGGGAACGTGTGTAGTGGGTTGAAGCCATGGTTGGCTGTTGCGCTTTTCCTGACGCGAGAGAGGACAAGAGA TCAATCTCTATGGAAACACTACTTCAAGATTCTGCCACAGGAAACTGATTCAACTATATACTGGTGGGTTTCTTTTGTTT GATCATTTATACTGCTGAAATAAGCTTGATGTGAATTTGGGTTCTTTTCATATGGTTGATTCAGTTTGTAATTGCTTCTT CAGTGCAGGTCAGAGGAGGAGCTATCGGAGCTTCAAGGTTAGTCATTTCATGAGGATATTTTAATGCATACCCATGTTTA GATAATGAGGAAATTGTTGTGTATCAAATGTGAGTAACTCCCGCATTGGAAGATAAGGTTAACTTTGAGCGGTTTATAAG TGAGAAGACTCATACACCTAATGCTTTAAGGTTTTTGGTGAAAGATGTGGTGTCCAACTCACTTGTGGTTTGCTTTGTGG ATTATAAAGTTTTTCATGGTCCGGTGTTACGCCTTATTGGTGCGCTCATTCCGAATTTCTTTGTACCGCCCCGAAGAGCA CAATGTGGAGTTTTATCCTTTAAATTATCTCCTTTAATTTTGCCCAACAGAAATGATATTAATTTTCTTAGCTTTGGCGT GTTGCTTATGTAGTTTATTTTTGGAAATTATTTTACGTGATGATGGTCATCTAAGACTAAGTGCATGTTTGGAAACTCGT TCGAAAACCAGGTGAAGCCAAAATCTTCAGCAAAAGTTAATGGAAGTTACTTCTGTTCACCATAATTTTGTTTTTTCGCC GCGGTTTTCAAACGAGTTTCTAAAGATGCACGAAATGCTACCGTTTTTGCGGTTGCAATATTTGACCAAAACCTGAATCT TGATTGAACTGATTTGAGTAGGTACTCAACTTCTGAAAACAACACTGGCTGTGAAGGAATATGTGAAGAGTGAATTTCTG AGACTGGAAGAAGAAATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACATTGGATGACTTCTACTGGGCATT TGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTAATTCCACTAGCAGACTTGGTAAGGT CCTTTTCACTTGAAACTGTGCAGCAATTAGGCACTTCCCTAACAGCAATGCCTGTAAAGTGTAAACAAAGGAGTAGAGTT AAACAGCATATAAAACTGTCTATGATATTCCTAGAATAGACATCATTTTACTTGTTCTGCTGATTTTGTCTTCTCCAGTC AATATAAATCACCTTGCACGAAGAAGAAAAAAATGACTTTATCCACAAATTAAATTTCTGAATCAGATAAACCACAGCGC CAGGGTAACTACAGAGGATCATGCTTATGAAGTTAAAGGAGCAGCAGGTCTTTTCTCTTGGGATTTCCTATTTTCCCTAA GGAGCCCCCTTTCTGTCAAGGCTGGGGAACAGGTGAAGTGTTGTTGCCTCATCTTATTTTCTTTTGATGTTCCATTTATT AGCAACATTCTCTTAAAATTATTAACATATCTATGTCCATCATGTTAGAAGTATAATGTAAAACTATTTATGTGTCATCT GCCCAACAACTTAAACTTTTAGGATAATTTGTTCATGACACATTGAAAGGGTTTTTGACGATAGGAACATTATTGTGTCT AAGAAGCTTATATATAAAATTGGGAGGAAAAACAAACATATTTTGAACTAACTGCATCAGTGCTAGAAATTTGAAGTAGA ACTTCACAATCCCAGTTTTAATCAAAGGCAGAAACTAGCTCTCATGTCAACAACTTCATACATCTCTCTTCATGATCTCA TTGAAAAGTACCTTGCAGTTGGTGACATAAATTACAATCATAGTGTATTACTGCAGGTATATATCCAATATGACTTGAAG AAAAGCAATGCCGAGTTGGCTTTAGACTACGGTTTCATTGAACCAACTACCGAGCGAAATGCATACAGCCTCACACTAGA GATATCTGAGGCAGATCCCTTTTATGGTGACAAATTAGACATTGCTGAGTCCAATGGTTTCAGTGTGTCAGAATCATTTG ATATCTTCTACAACCGCCCACTTCCACCAGGGTTGCTTCTGTATCTGAGGCTATTAGCGCTAGGAGGTACTGATGCTTTC TTATTGGAATCAATATTCAGAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAAGAGCTAGTATG CCGTGTTGTTCGAGAAGCCTGCAACTCTGCCCTTGGAGGTTATCATACAACTATTGAAGAGGTATGACTGTGCTGAACTA TTTTCACAAATCTGCCCTTCTGTCTAAGTCACCCTCATTACCCATGAGGGTGATTTAGCTCTACCCTAATGGACCAATAA GATCATTTATTAAAAAATAATGAAAAAAGTTATGAAATTTCTTATCCATTTATCTTAAATTCTTTTGCACCTCTTGGTGC ATCACCCACTAATGCATATGATCTCCAACCCCAATTTAATATAAATACCGGTCTAATATCATAACTTCATAAGGGCATGA TCACTATTTGTACTAGACAAAGAAGAAAACATGAAATCATGGACAAAGACTAAGTTCATAGATAGACTGAATATTCATTA CTGGATCAATTTTATTAAATAGATCAGTATTTAAATAATCTTAATAGATCATAAATGGGCAATGGGCTGTTCTTGCCACC CCTAATTTGTTCGTTTCTGTCAATCAATTATACAAATAGTTCCAAACATGTTATGTCTTGCAGTGATGCATGCACTTAAA ATTGTGAAAATTTTGATTGAGCTTAGCAACTGAACAAAGCATGTAACTAGCAGGATCTGAAACTAAAAGAAACAAATATA GATTCAAGACTTGCAATCGCAGTTGGAATAAGAGAAGGGGAGAAGTTGCTCCTGCAGCAAATTGATGAGATCTTCAAGGA GAAAGAATTGGAGCTGGACCAATTAGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGAGAAAGTGGTG ATGTTCTTGGGGATCTTGGAAAATACTTTTAAATTTGCAGGAAGCAGTTAAAGACACACCAAATCATTGGTAAGTAATGG ATGGAATCTACCGATACGAATGCACCTTGGATTCAATCAATCTTAAAAATGATTATAATCAAGTTTTAGACTCAGCTCCA TTTATTGATTACAACCCATTACTTGAAAGCTTCATGTACATGTAAAGAGAAAATGTAATGCATGTATACACTTCTATATT GGTGCTAATTTGTAAAGCAGTTGACCTTCGCGGGGCTAATGAGATTGAACTTTAGAAGGCATGATGTGATCCTGAGGCTG CTACATGAGTTATTATAGTACTATTTTGAATGGCCATTTGTAAATATTAGAATTGATTTTTCCTACTATAATCAACAGAT GTGGCATTTCAGGATGTGGTCTAACTCAAAACTCAAAGTGTGATTTTTGTGTTAATCAACAGAGTTATTATAGTTGTGCA TCAGGATGTGGTCTTTTACCGATTTCATAC
CDS sequence (LotjaGi4g1v0089800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGTGCTTTATCTGTAGGTTCAGGCTGTGCTTTTCCCTTTCACAACAACACCTCCTTGTCCATGGCAGCCAAACC GTCACTCCTTCAGCTGAAGAAGCCTTTCGCTTCTATAGGAACCGAAACAACACCGGCGGTGTCTCCGGCAGTTCAAACCT TCTGGCAGTGGCTGAAGGAAGAAGGCGTTATCTCTGCCAAGACACCAGTGAAACCTGGTGCAGTCCCTGAAGGCCTTGGT CTAGTTGCCGTGAAAGACATTTCAAGAAACGACGTGGTTTTGCAGGTGCCCAAGAGGCTCTGGATAAACCCTGATGCTGT TGCAGCTTCAGAGATAGGGAACGTGTGTAGTGGGTTGAAGCCATGGTTGGCTGTTGCGCTTTTCCTGACGCGAGAGAGGA CAAGAGATCAATCTCTATGGAAACACTACTTCAAGATTCTGCCACAGGAAACTGATTCAACTATATACTGGTCAGAGGAG GAGCTATCGGAGCTTCAAGGTACTCAACTTCTGAAAACAACACTGGCTGTGAAGGAATATGTGAAGAGTGAATTTCTGAG ACTGGAAGAAGAAATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACATTGGATGACTTCTACTGGGCATTTG GAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTAATTCCACTAGCAGACTTGATAAACCAC AGCGCCAGGGTAACTACAGAGGATCATGCTTATGAAGTTAAAGGAGCAGCAGGTCTTTTCTCTTGGGATTTCCTATTTTC CCTAAGGAGCCCCCTTTCTGTCAAGGCTGGGGAACAGGTATATATCCAATATGACTTGAAGAAAAGCAATGCCGAGTTGG CTTTAGACTACGGTTTCATTGAACCAACTACCGAGCGAAATGCATACAGCCTCACACTAGAGATATCTGAGGCAGATCCC TTTTATGGTGACAAATTAGACATTGCTGAGTCCAATGGTTTCAGTGTGTCAGAATCATTTGATATCTTCTACAACCGCCC ACTTCCACCAGGGTTGCTTCTGTATCTGAGGCTATTAGCGCTAGGAGGTACTGATGCTTTCTTATTGGAATCAATATTCA GAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAAGAGCTAGTATGCCGTGTTGTTCGAGAAGCC TGCAACTCTGCCCTTGGAGGTTATCATACAACTATTGAAGAGGATCTGAAACTAAAAGAAACAAATATAGATTCAAGACT TGCAATCGCAGTTGGAATAAGAGAAGGGGAGAAGTTGCTCCTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAATTGG AGCTGGACCAATTAGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGAGAAAGTGGTGATGTTCTTGGG GATCTTGGAAAATACTTTTAA
Protein sequence (LotjaGi4g1v0089800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASALSVGSGCAFPFHNNTSLSMAAKPSLLQLKKPFASIGTETTPAVSPAVQTFWQWLKEEGVISAKTPVKPGAVPEGLG LVAVKDISRNDVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLAVALFLTRERTRDQSLWKHYFKILPQETDSTIYWSEE ELSELQGTQLLKTTLAVKEYVKSEFLRLEEEIILPNKKLFPSPITLDDFYWAFGILRSRAFSRLRNENLVVIPLADLINH SARVTTEDHAYEVKGAAGLFSWDFLFSLRSPLSVKAGEQVYIQYDLKKSNAELALDYGFIEPTTERNAYSLTLEISEADP FYGDKLDIAESNGFSVSESFDIFYNRPLPPGLLLYLRLLALGGTDAFLLESIFRNSIWGHLELPVSRDNEELVCRVVREA CNSALGGYHTTIEEDLKLKETNIDSRLAIAVGIREGEKLLLQQIDEIFKEKELELDQLEYYQERRLKDLGLCGESGDVLG DLGKYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PIRSF | 1 | 485 | 485 | 4.4E-231 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| ProSiteProfiles | 5 | 484 | 480 | 91.188 | ||
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 486 | 462 | - | – | |
| PANTHER | 39 | 465 | 427 | 2.5E-96 | – | |
| PANTHER | 39 | 465 | 427 | 2.5E-96 | – | |
| Gene3D | 46 | 300 | 255 | 3.1E-99 | – | |
| SUPERFAMILY | 48 | 304 | 257 | 1.92E-73 | – | |
| ProSiteProfiles | 61 | 285 | 225 | 12.09 | ||
| SMART | 66 | 291 | 226 | 7.4E-9 | ||
| Pfam | 78 | 284 | 207 | 9.3E-8 | ||
| Gene3D | 301 | 465 | 165 | 5.9E-53 | ||
| SUPERFAMILY | 309 | 479 | 171 | 1.15E-52 | ||
| Pfam | 318 | 439 | 122 | 8.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. | ||
| Molecular function | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine. |
Expression pattern of LotjaGi4g1v0089800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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