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LotjaGi4g1v0101600.1

Overview

Field Value
Gene ID LotjaGi4g1v0101600
Transcript ID LotjaGi4g1v0101600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description tRNA-dihydrouridine synthase-like protein; TAIR: AT5G67220.1 FMN-linked oxidoreductases superfamily protein; Swiss-Prot: sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD](P)(+)]-like; TrEMBL-Plants: tr|I1K265|I1K265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:13917415..13921428) extracted from Lotus japonicus Gifu genome v1.2.

TAATTTAAGAATGAAAATAATTATTTTTAGGTTTGACTATAGCGATGACCTTTTTTTACTTAAAACGCTATGCCGTTTAC AACACTCACAGAGTCACAGAGGTTGCTTCACAACCGAAAATATCCCAAAACCTCATCTTCATCGACACCTCAAACTGTAG GTATTTCAATGGCGGCGATTGTTTCCTTCGCAAAACCCACTTCCCGCTCATGAAACCCGAACCCAAACCCTTCTCTCTCC TCTCCATCATCCACAACCGCAACCATTCTCATCTCGCCGCAAAACCTCATCCTCTAATGGCCCAAACCCCACCATCTCCG GATCCAAACTCGCCCCAACAAACCGACAACGACGACCACCAACAACCACCCTTTTCACCGCCCAGAAACCTCGCCGGAGA AACCCAGGTGGAGCGCGCGTGGGCTCACTGGACCAAATTGGGCCGACCCAAGTTTCTAGTTGCCCCCATGGTTGACAATT CGGAGCTACCGTTTCGAATGCTGTGTCGCAAGTATGGTGCTGAGGGTGCATACACCCCTATGCTGCACTCGCGGATATTC ACCGAGACTGAGAAGTACAGGAAGGAAGAGTTCACAACTTGCAAGGTAGCATTTGCGTGTTCTTCTACTTCGTTGTTATT GTCATAGTTTTTTTTGTTACAAGTCCCTCATTGGCTAGAAATAGAGCATAGATAGCCTTTATAAGGGTAGTGCAAACCTC AACTCTTGAGCTAGCTTTTGTAGTTGAGTATAGGCCTCCCAATTTCTAATAGTTTTGTTTGTTGTTTTGAAAGTTGTGAA TTTGGGAGTGATTGCAGGAGGATCGACCACTGTTTGTTCAATTCTGTGCTAATGACCCAGATGTGTTGTTGGAAGCTGCA CGCAAGGTGGAGCCTTATTGCGATTATGTTGATATTAATCTTGGGTAATGTGATATGTATTATTTTGCATTTGCTCAGAA TCTGTTGAATATCTTTTTTGTGCTTGCCTAATTAGCGTGACGATAATATCGAATGGAAATTGAAATGAATGAGTGCTTAG TGGTGAGTGTTGTTGATAGGACTTTACTAATCACAATGTAATTGTGGGTTTAGAGTGGAATTCAAAATTAGAACTCTCAT AATGAGTACATGATGTTTTAAGGATCAGTTGCTTGTGATTAAGATACTAGTTACTGTACGATAATTCCTCCGTGCTCTAA GAAAACTTTCTTTTTTTGTTTAGTAAGTACCATTTAATGTGTATTACTATTATCTCACTTATACATTGAAAATATTGAAG TGGGGCACACGGATGGACGGGTAGCTATGGAGGTACATGTTAAATAGTAGACTTAAATATGTGTTTTGTTCGACTTTGAT CCCTCTCTTTGGCAAATAGACATTTGTAAGTCCTAAACACCACTTAAAGTGAGGTGGTTATGCACTCCCTTGCTCACATG TTCAAGTCGTATTTTCGTGGCCATTCTCAGAAACTCAGTAGACTTCAAGATAAAATCACCATTAAACACAAACCAATCCC TGAAAACCCTTAAGAAGTAGAACCGAAAATTATACTCACAACTTCCTTAGTCCATGTCTTGCACATGTTTCTCAAATAAA GGGTATCACTGTCTATATCTCTGCAAGTTTAGCTTCCAGAGTACTGGTCTTGACTGCTTCGATGCTTGAAACCTTAGCAC TGTCAACCAAATTTGAAGCTGAGGTATCAGATTCAGGTAGAGAAGATAGTGATGCATGTGAGAAGACACTCTCTGAGTCA TCCAAAGTAGCAGACTTGGAGTCTGATACAGAAGCTGCAGCAGAAGAAACGCAGTAGTTGGGGCTATTCTTTTCTAGGGC AGTCGTAGTTTCAATAGAAACGACAACATTGTTCTTGTTCGTCTCATCAGATAGAACCTTAGACATAGTTTCAAATTCAA GCCTTTTGTTCTCATAGGCTTTGGAAAGCCTCTTCTGTGGTGTTGTAAGTACCCAGCCATAGATGTGCACCCTTGAACGG GTCACGAATCTCTGAAGCACATTTGCTCCATTTCCTCACTCGAACACTTTTGTATTTGCTAAATTGAAGTATTGAACCCT TGAACTGTGGTTGTCTCTTCATTGAAGGGGTTTTGGCTGTAACCCTCTTCTTGTTTAGTCTCTTGGTTGTTTGAGCCACA ATGGTGCCACTTAAGGTTAGGGTTCAACAATTGGGGCTAAATCATTTCCGCATGGCAGCCAGCCAGCCACATAGGGTTTT AATTTTTTTTGTGAATAGGCACGGAAACCCACATTATATAACTTAAAATGTGAGTAGGGGAGTGCATTGTCACCTCATCA TTTAAATAGTGTTGAAGGCTTAAATATGTATATTTCCAAATTCCAAAAAAGAGGGACCAAAGTCAAACAAAAAAAGGAAG GGCCAAACCCAATAACTTCTCACAATACAAGTACCAAAATCATATTTTAGCCTGAATAGTATAAAACTAATTTGAGTTCT TAAGATTTTCTCGTCACTATAACTTGATGTAGCCATTTTGGATGTTACCTCCTTGATAATTGTAATTAAAATTTGACAAA AGTGCACTTGTTAAAATTTCAAAATTACTTTCCATGTATTCAGTGTTATGTTTTGTAATAAACAGTTAACAGTTTCTATT TCTTGATTATTTAGACAATGCACATGAGGCACTATTTATCAAGGCATTTAAGATTTTGATGGATTTATTTTTTGTGATTC TCTAGGTGTCCTCAGCGCATTGCTAAACGAGGATATTATGGAGCCTTCTTGATGGATAACCTTCCTCTTGTGAAATCTCT CGTGGAAAATTTGGCTCTCAACCTGCAAGTTCCTGTTTCGTGCAAGATTAGGCTCTTTCCGAATTTAGAGGACACTTTGA AGTATGCTAGGATGCTTGAGGAGGCGGGTTGTTTTCTTTTAGCTGTTCATGGGAGGACAAGGGATGAGAAGGATGGGAAG AAATTTCGAGCTGACTGGAAAGCCATCAAGGCTGTGAAGGATGCAGTTAGAATCCCAGTCCTCGCGAATGGGAACATAAG GCACGTGGATGATGTTAGAGACTGTTTGGAAGAGACCGGTGTCGAAGGTGTGCTCTCTGCTGAGACTCTGCTTGAAAACC CAGCACTCTTTGCTGGATTTCGAACTGCTGAATGGGTGTCCGGCAGCGAAGGAACCATTGTGGATAGTGAAGGAACCATT GTGGATGGAAGGCTGGATCAGGCAGATCTAGTGATAGAGTATTTGAAACTTTGTGAAAAGTACCCTGTGCCATGGAGAAT GATTCGCTCTCATGTTCATAAAATGTTGGGAGACTGGTTCAGCCTTCAGCCTCACATCAGGGAGGAGCTTAACCAACAAT CTAAACTGACATTCGAGTTTCTTTATGACATGGTGGATCGGCTTAGGGCTACAGGTACAAGAATCCCACTTTATCTCAAA GATGACCGGGTGGAAACGCTAAAGTAGACAGTTACGCAGGTTTTACACAGCAGAACACCAACATTTGGGGTTCAAATTTA AACCAGAACCAGAATGAAATTATTTATCTTGTGTTAAAGGTGAGGGTGCCTCGAGGTAAAGCCAGCTTGAATCACATGAT TTAGATACAATTTTGTAGCTATTAGAAGTGAGAATTACTAAAATTACTAATCTCTCGTGTTGTATTTTACTTCATTCTTA TGGCAATTGCCTATTGGCAGTGTTGTACAAGTGTGTTAAGACGCCGATGCTTGCACTTAGCTGATAAATTTGTGTCCATT AATTTAACATTTCATAGCCTGGACCAGTTAATGTTAAAGACTGCTTCAACGATCTAAATAAACACATTTCTGTTCGATTT AGATGGTTGTTAATTGATTTCATTTGTTTGTTATTTGGTTTTGTCTAATGTTTATGATATTATATGACAACTGGGAGCAT GTGAACTTCCTATACTTGTCTTGAAACTGAAAGCATTCTCAGGTCATAAATTTTCAGCATAAAGATATTGTAGATAATAA ATGCTTGACTTCTC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0101600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCTTTTTTTACTTAAAACGCTATGCCGTTTACAACACTCACAGAGTCACAGAGGTTGCTTCACAACCGAAAATATC CCAAAACCTCATCTTCATCGACACCTCAAACTGTAGGTATTTCAATGGCGGCGATTGTTTCCTTCGCAAAACCCACTTCC CGCTCATGAAACCCGAACCCAAACCCTTCTCTCTCCTCTCCATCATCCACAACCGCAACCATTCTCATCTCGCCGCAAAA CCTCATCCTCTAATGGCCCAAACCCCACCATCTCCGGATCCAAACTCGCCCCAACAAACCGACAACGACGACCACCAACA ACCACCCTTTTCACCGCCCAGAAACCTCGCCGGAGAAACCCAGGTGGAGCGCGCGTGGGCTCACTGGACCAAATTGGGCC GACCCAAGTTTCTAGTTGCCCCCATGGTTGACAATTCGGAGCTACCGTTTCGAATGCTGTGTCGCAAGTATGGTGCTGAG GGTGCATACACCCCTATGCTGCACTCGCGGATATTCACCGAGACTGAGAAGTACAGGAAGGAAGAGTTCACAACTTGCAA GGAGGATCGACCACTGTTTGTTCAATTCTGTGCTAATGACCCAGATGTGTTGTTGGAAGCTGCACGCAAGGTGGAGCCTT ATTGCGATTATGTTGATATTAATCTTGGGTGTCCTCAGCGCATTGCTAAACGAGGATATTATGGAGCCTTCTTGATGGAT AACCTTCCTCTTGTGAAATCTCTCGTGGAAAATTTGGCTCTCAACCTGCAAGTTCCTGTTTCGTGCAAGATTAGGCTCTT TCCGAATTTAGAGGACACTTTGAAGTATGCTAGGATGCTTGAGGAGGCGGGTTGTTTTCTTTTAGCTGTTCATGGGAGGA CAAGGGATGAGAAGGATGGGAAGAAATTTCGAGCTGACTGGAAAGCCATCAAGGCTGTGAAGGATGCAGTTAGAATCCCA GTCCTCGCGAATGGGAACATAAGGCACGTGGATGATGTTAGAGACTGTTTGGAAGAGACCGGTGTCGAAGGTGTGCTCTC TGCTGAGACTCTGCTTGAAAACCCAGCACTCTTTGCTGGATTTCGAACTGCTGAATGGGTGTCCGGCAGCGAAGGAACCA TTGTGGATAGTGAAGGAACCATTGTGGATGGAAGGCTGGATCAGGCAGATCTAGTGATAGAGTATTTGAAACTTTGTGAA AAGTACCCTGTGCCATGGAGAATGATTCGCTCTCATGTTCATAAAATGTTGGGAGACTGGTTCAGCCTTCAGCCTCACAT CAGGGAGGAGCTTAACCAACAATCTAAACTGACATTCGAGTTTCTTTATGACATGGTGGATCGGCTTAGGGCTACAGGTA CAAGAATCCCACTTTATCTCAAAGATGACCGGGTGGAAACGCTAAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0101600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTFFYLKRYAVYNTHRVTEVASQPKISQNLIFIDTSNCRYFNGGDCFLRKTHFPLMKPEPKPFSLLSIIHNRNHSHLAAK PHPLMAQTPPSPDPNSPQQTDNDDHQQPPFSPPRNLAGETQVERAWAHWTKLGRPKFLVAPMVDNSELPFRMLCRKYGAE GAYTPMLHSRIFTETEKYRKEEFTTCKEDRPLFVQFCANDPDVLLEAARKVEPYCDYVDINLGCPQRIAKRGYYGAFLMD NLPLVKSLVENLALNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCFLLAVHGRTRDEKDGKKFRADWKAIKAVKDAVRIP VLANGNIRHVDDVRDCLEETGVEGVLSAETLLENPALFAGFRTAEWVSGSEGTIVDSEGTIVDGRLDQADLVIEYLKLCE KYPVPWRMIRSHVHKMLGDWFSLQPHIREELNQQSKLTFEFLYDMVDRLRATGTRIPLYLKDDRVETLK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
82 116 35 - –
PANTHER
PTHR11082
102 466 365 1.5E-202 –
PANTHER
PTHR11082:SF32
102 466 365 1.5E-202 –
Gene3D
G3DSA:3.20.20.70
134 367 234 6.6E-70
IPR013785
SUPERFAMILY
SSF51395
135 419 285 1.19E-68 –
CDD
cd02801
136 366 231 5.59692E-101
IPR035587
Pfam
PF01207
139 436 298 2.8E-71
IPR001269
ProSitePatterns
PS01136
218 236 19 -
IPR018517

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0017150
Molecular function TRNA dihydrouridine synthase activity Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0101600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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