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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0124400 |
| Transcript ID | LotjaGi4g1v0124400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT5G66330.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2; TrEMBL-Plants: tr|A0A067G689|A0A067G689_CITSI Uncharacterized protein; Found in the gene: LotjaGi4g1v0124400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18013825..18016223) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTCTAACTCATGATACATTCAAAATATTAGTATTGAATTATCTAAAACTATAATAATTTTACTCAATATATTTAT TTTGGTGATTTTGAGAAATCTTAAAGTAACACTTTGTTTGATAGAGGGAGGTTTGGATAGAGAGAGATGGAGAAGAGAGA GTTAGGGGGAGGAATGATGAAGTATGTGTGTTTGGTAGGTGAGAGGAGGGAGATAGAGGGGAGAAAAAGTGGTGGGTCCC ACCACTTTTTTTGTCTCTCCAAATTGAAGAGAGATTAAAGAGAAATGAGTGAAGGTTTGATTTATCATACCAAACAACCT ATAAATCTACTATATTTTTCACTTATTTCTCTCTACTCAACTTCTCTCTTTTATACTTTCCCTTCTCTATCTCTCTCTTC TCTACCAAACAGAGTGTAAATGTGTAACTAGCATTCATTTTCCTTTAACACACCATACAAGGTGAGAAATGAGAACTACG AAGAAAAATACCTAGTGTTGTTTCTCCCTTTTCTTTCCTTAATAAACAAACAAACAAAAAAGTTCATGAAAAATCATATC AAAATTTTAAAATGAGAGCTTCATATGCATCATCAGAGAAGCCTCTGACACCAAACAATCTCTGACACTCAACTTAGTAG GGAACAGAGCCAATTACTAAACCCCATCTTTACTCTCCTCTTCACATCTCACTCACACTTCCTTTCTTTCTACTCTTTCC TCCATCAACACTCTCCTTCAGATCTCTCCATCCAAACCTGATTCAACTAAGAAACTCTCAAATGGGGTTCCTCAGTTTCC CAAAGTTACATCTACTTCTCATCTTTACAGCTTCCATAACCTCATTCAATGCAGAATCAAAGACACATTGGGAAGACACA GAGGTTCTGAAGCAACTAAAGAACAGCATCGACCCTTCTTCTCTGAACCCAGGTTCATGTCTCAGCTCATGGGACTTCAC TCTTGACCCATGCGACAACCTCTTCAGCGAAAAATTCACCTGCGGGTTCAGGTGCGACGCGGTCGAGTCAGGAACGAGTC GACTCACCGAACTCAGCCTCGACCAGGCGGGTTACTCCGGATCACTCGCCGCCACCACCTGGAACAACCTCCCCTACCTC GACACCGTCGACATCTCAAACAACAACTTCTCAGGCCAAATCCCCGAGTCACTCTCCAACCTGACTCGCCTCCGCCGACT CGGTCTGTCGAGAAACTCGTTCACCGGCGAGATACCCTCTTCAATCGGTTCACTCTCCAACCTCGAAGAGCTCTACCTCG ATGGCAACAATCTTCAAGGAACAATCCCAGGTAGCTTCAATGGCCTCAAAAGCTTGAACAGGCTCGAACTTCAGTTCAAC AAACTCTCCGGCGAGCTTCCGAATCTGGGTTCTCTGAAGAATCTCAATTACATGGACCTCAGCGTCAACGCCATCACCGG AGCTTTGCCGGCGACACTGCCGGAGTCTCTGGTTCAAATCTCAATGAGAAACAACAGTTTGAAGGGCGAGTTAGCTTCCG AGAGTTTCAGAAACTTGAGGTATTTGCAGGTAGTGGATTTGAGCTACAACGAGTTCAGAGGCTCTGTTCCTTTTGCTCTG TTTCAGCTTCCATCGTTGCAGCAGCTATCACTCTCTCACAACCAGTTCTCTTTCCTGCAAGAACCTTCTTCCGCTTTGGA CTCGCTAAGCTCTGGGCTAGTAGAAATCGATCTGAGCAACAATGAGCTTGAGGGTTTTCTGCCTCTGTTCATGGCAGTGA TGCCAAAGCTTGCATCATTATCATTGGAGAACAACAGATTCAGTGGAATGATTCCGACCCAGTACGCTTTGAAAGCAGTT TTTCCAGAATCTGGGGTTTCTCAGTTTGAGAGGCTTCTGTTGGGTGGGAATTTCTTGTTTGGAGGTATACCAAGTGCTCT AATGGCGCTTGAACCTGGTTCTGCAAATGTGGGTCTTGCTGGGAATTGCTTGTATAGGTGCCCTCGTGTTTTGTTTTTCT GTCAAGGTGAGGATCAAAAATCTTTTGATGAATGTAAGAGATTCATCCCCTAAGATCATAGATATTGTTATTTAGATTTT TTCTTTTTCTCTTTTGGGTCTTGCTCTCTCTGCCTCCTTCATTGTTCTTTCTTCAAGTTCAGTTTTTACTTTGCCTTTTT TAATGATAAATTTCTAATTTCAGGTGCTAATTAAATTATTAAATGTGGTTTGATGATAGGGAATCTTGTGTGGAGTACAA AAGAACCTTGAACAACGTATTAAAAGAAAGGAATTTATCTTTTGGGATCAAGCATAAAATACCAATATATATGTTTTTTT ATCGTGCCCGTTCGGTTTTCAGTTTTAAAGTGGTTTTCTCAAACGGAAGCTCAAAGTCTCTTTCAAGTTTGGAATGTCT
CDS sequence (LotjaGi4g1v0124400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTCCTCAGTTTCCCAAAGTTACATCTACTTCTCATCTTTACAGCTTCCATAACCTCATTCAATGCAGAATCAAA GACACATTGGGAAGACACAGAGGTTCTGAAGCAACTAAAGAACAGCATCGACCCTTCTTCTCTGAACCCAGGTTCATGTC TCAGCTCATGGGACTTCACTCTTGACCCATGCGACAACCTCTTCAGCGAAAAATTCACCTGCGGGTTCAGGTGCGACGCG GTCGAGTCAGGAACGAGTCGACTCACCGAACTCAGCCTCGACCAGGCGGGTTACTCCGGATCACTCGCCGCCACCACCTG GAACAACCTCCCCTACCTCGACACCGTCGACATCTCAAACAACAACTTCTCAGGCCAAATCCCCGAGTCACTCTCCAACC TGACTCGCCTCCGCCGACTCGGTCTGTCGAGAAACTCGTTCACCGGCGAGATACCCTCTTCAATCGGTTCACTCTCCAAC CTCGAAGAGCTCTACCTCGATGGCAACAATCTTCAAGGAACAATCCCAGGTAGCTTCAATGGCCTCAAAAGCTTGAACAG GCTCGAACTTCAGTTCAACAAACTCTCCGGCGAGCTTCCGAATCTGGGTTCTCTGAAGAATCTCAATTACATGGACCTCA GCGTCAACGCCATCACCGGAGCTTTGCCGGCGACACTGCCGGAGTCTCTGGTTCAAATCTCAATGAGAAACAACAGTTTG AAGGGCGAGTTAGCTTCCGAGAGTTTCAGAAACTTGAGGTATTTGCAGGTAGTGGATTTGAGCTACAACGAGTTCAGAGG CTCTGTTCCTTTTGCTCTGTTTCAGCTTCCATCGTTGCAGCAGCTATCACTCTCTCACAACCAGTTCTCTTTCCTGCAAG AACCTTCTTCCGCTTTGGACTCGCTAAGCTCTGGGCTAGTAGAAATCGATCTGAGCAACAATGAGCTTGAGGGTTTTCTG CCTCTGTTCATGGCAGTGATGCCAAAGCTTGCATCATTATCATTGGAGAACAACAGATTCAGTGGAATGATTCCGACCCA GTACGCTTTGAAAGCAGTTTTTCCAGAATCTGGGGTTTCTCAGTTTGAGAGGCTTCTGTTGGGTGGGAATTTCTTGTTTG GAGGTATACCAAGTGCTCTAATGGCGCTTGAACCTGGTTCTGCAAATGTGGGTCTTGCTGGGAATTGCTTGTATAGGTGC CCTCGTGTTTTGTTTTTCTGTCAAGGTGAGGATCAAAAATCTTTTGATGAATGTAAGAGATTCATCCCCTAA
Protein sequence (LotjaGi4g1v0124400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLSFPKLHLLLIFTASITSFNAESKTHWEDTEVLKQLKNSIDPSSLNPGSCLSSWDFTLDPCDNLFSEKFTCGFRCDA VESGTSRLTELSLDQAGYSGSLAATTWNNLPYLDTVDISNNNFSGQIPESLSNLTRLRRLGLSRNSFTGEIPSSIGSLSN LEELYLDGNNLQGTIPGSFNGLKSLNRLELQFNKLSGELPNLGSLKNLNYMDLSVNAITGALPATLPESLVQISMRNNSL KGELASESFRNLRYLQVVDLSYNEFRGSVPFALFQLPSLQQLSLSHNQFSFLQEPSSALDSLSSGLVEIDLSNNELEGFL PLFMAVMPKLASLSLENNRFSGMIPTQYALKAVFPESGVSQFERLLLGGNFLFGGIPSALMALEPGSANVGLAGNCLYRC PRVLFFCQGEDQKSFDECKRFIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| PANTHER | 18 | 422 | 405 | 9.5E-167 | – | |
| PANTHER | 18 | 422 | 405 | 9.5E-167 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Gene3D | 24 | 200 | 177 | 1.3E-40 | ||
| Phobius | 25 | 423 | 399 | - | – | |
| SUPERFAMILY | 83 | 349 | 267 | 2.49E-50 | – | |
| SMART | 134 | 157 | 24 | 260.0 | ||
| Pfam | 136 | 195 | 60 | 4.3E-10 | ||
| SMART | 158 | 181 | 24 | 3.4 | ||
| SMART | 182 | 205 | 24 | 280.0 | ||
| Gene3D | 201 | 408 | 208 | 3.5E-34 | ||
| Pfam | 229 | 289 | 61 | 5.2E-10 | ||
| SMART | 276 | 301 | 26 | 3.2 | ||
| SMART | 327 | 350 | 24 | 260.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0124400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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