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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0129500 |
| Transcript ID | LotjaGi4g1v0129500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|A0A151SJL6|A0A151SJL6_CAJCA 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18951922..18956483) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTTCGCAAGTAACCTGAGTTTCTCTAATCTCTCTCCTTCCCTCCGACAGAACCAGTGCTTTCTCTTCCACTCTCAT ATTCGATCTCTTCTCTTCTCAACTCTCCAACCATGGTGCTCGAGGTAACCCTAAATTTCTCCTTCGTCAACGACCTCACC GTGCCACGAAGAATCCCTCCTTTCTTCTCCTTGTTCATCTGGCCAATTAGGGTTTTTATTTTTCATGCTGTTACTGCAAC AATTTCTCATAGCGTAATCGTTTTTTGATAGGCGACGATGATCTGTATTGACAATTCTGAATGGATGCGTAATGGGGACT ACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCTGTCAATCTTATTTGTGGTGCTAAAACCCAGGTTGATTGCGATTTT TCAGTCATCTTTTCAATGATGTTGTATTTGAGAATTGGATTTTACATTTAGTTTGAATTGTGGTGATTGCACGGGTTCAG TTATGCTCATGAATTTTTGTTTTTTTGTTTGGTGATTCAGTCTAATCCTGAGAATACGGTTGGAGTTCTCACGATGGCGG GGAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGATTTGGGAAAGATCTTAGCTTGTATGCATGGTCAGTTTCTATTT CTTGATATATTTGTTTTCCTTTTCCTTATGATTTAAGTACTTGCCCTTGCGAATGTGCCATAGTGGGGGGAATTTTTGGG ATGAATGGATTGAATTTGATTGCCTTGTAGTGTTGCCAGTGTAAGCATACTGAGATGAAATCTGTATATTTACTATATTA AGTTTTATTGATTAATGCTCGGTTTTGCGAGTAATTATGTGGAAGCTCTTAGGTTGCTGGAACTTGTCAGTTCACAAGCT ATTAGTGAGATTAAGCTTTCATGTAACTCATTCTCATAAATGTTGATCAAAGGCAACAAGTTTGCAATGTGTTATTCTGA CATATATCTTATTGTTGGAATTGAATTCTTCTGTTCGTGAGAGTTTATGTAATTTTCTCACTTTTCTTCTTAATTTAGGA CTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGTTAGCTCTTAAGCATCGGCAGAATAAGAA ACAGCAGCAAAGGATTATTGTCTTTACTGGGAGGTATGAACAGCTATTCTTTTCAGTTTTATTTTGATGTTTTCATTTGC ACCTGTTTCTCTCCATTTTTATCTCATTCTGTGTTTTTTAGTCCTATCAAGCACGAGAAGAAAATGTTGGAGATGATTGG GCGAAAGTTGAAAAAGAATAGCGTTGCACTTGACATTGTCAATTTTGGTGAAGAAGACGAGGGAAAGACAGAGAAGCTGG ATGCACTCCTTGCAGCCGTTAATAATAATGATACCAGCCGCATGGCTCATGTTCCACCTGGTCCAAATGCTCTATCTGAT GTACTTATAAGGTTTGTGAGTTCAATTTCATCTTTTGTGCTTTTTCAATGTACTTCCTTTCTATTCAGTATTCCCATTTG AACTAGAATTTCTGCTTCCGTAAAAGCATTAGCTGTAAAATGCAGAGAAGTTCTATCTTTGCTGTTTCTACTTGATTCTG CCCACTTGTATTCTAAAAGCTCAATAGGAGAGTTTAGACTTTGGAATCTTGTGCATTTTATTTTCTTGGTTGTTTACTCA TTCCTCAAATAGCAATTAACTCTTCTTTGAGAAACACATTCTGAAGTCCAAAGCCCCTCAGAGTCAGAGGTCAAATCTTT TGTTTGAATAATCCATTTTGTACAGATCACAGATCACATGCCTCTGTCCTCTGTGTATGTGTGTCTTGCGCAATTCAAGT TCCAAAACAATGAGTCATTTATTTGAGCTGCAAGGAAGCAGCTTCTTCTCTGGAAGAAACTTCTTTGTTTTTTTATCTGA AATCCTCAAGGAGCAATGGTTTTGTCCTTCTGCTTTTCCACAGTTTCTGTTGGTTTGATAGAGAGCTTTTGATACCAAGG AGGAGGCCTAAATTCTATGGCTTTATGCAGTGACTCTTTGCAATTGTTTGTTTGACTTAATTAAAATGAACAGAAATATT TATCAGGACTTATTAGTGTTCCCTTGCAGCTAAATATACTGTGGGACATATTGATATTTTAGGAGCAATTTGGTGTTTGG CCCATGAATGTTTCCATCTTAAACTTGCGGAGCGATTGGGGAACCCTGTTGCTTTCTTAATATTTTTTCTCTTATCCTTG TTTCTCACTTGTATTTATTTGTTTTACCTTTTAGAGGATTCCTTATCCTTGCTTCTGTAATTACTTTCTTTCTCTGCAAT CAAATGATTTTTAATTGATAAAAGCCTTCTGGGATAATTAAGTAACTTTGCTTTGTGGTAGTACACCAATTTTTACTGGT GATGGAGAGGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGCAGGTGGTGTATCTGGATATGACTTTGG CGTGGATCCGAACTTGGACCCGGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCCGACAGGAAGCAG CTGCAAAGAAGGCTGCAGAGGATGCTTCCAAGGAGAATGGTGGTGAGCAGCAAGCCAGCTCGCAGGATGCAGCCATGATT GAGCGTGCTAGTGAAGAAACTTCAGAAGCTGCGACTAAGACAAATGATATGATGGTTGGTGTAATTTGTTGATTTAGCCG TGTTCATTTCTTGTTTGTCGTATGGCTTGTTTGGATTATAAGAACAATTATCTATATATATGATTGACTCATTCTGACAT GCTACCATCTGCATTGATTGTGATGACCTGTTAGTTATCACATACTTTATGGAGGTGTTGCATCCCATAACTAACCTTGG AATAGTTGATTTAATATGTGTCTACGTGTGTGCGTGCATACAGACACACACACACACATAGACATCACATAGATGATCCA TGGCATGGAGATTTAACAAGGGTTTACATGGGTTGTTGATTCCGTAACACGACCCTCCTCCAGTTATGTAATACACATAG GAAGATTTAAAAGATAGACTAGACGGAGGACAGTCTAATAGTTAGAGCCTTAGAGGTATGGGGATGGGGATATCAAGGTA AACTATAGGTCAAACTATCAAGTTAAGAGAACTTTGAATTCCAGTTATCTACATAATTATGCATGATTAATGACAGAATA TTGTGGCGTTGTTTGATTCATGTAATTGACCTCACCTAATAGGAAGAAAAGGCTTCCGTTGTTGTTAATGATACTTTAGG AGTAACTCTTGCCGAGTTACTCCACTTTGTAACTTCTCATGTAATATGAATTTAGAAAATTCTGTTGAATTATGTGATAT TAACGTGATAATTATTTATGCCAAATTTTAGTTAAATCTGACATTCACACACACGCGCACACATATATATAAATTCATAT TCTATAATTTTATTTAAGCAGACTCCTGGAGTAAGTGGATCCTAATCCATGTGTGCGTACACACACACATAGTATATATA TTGCGTCTACCTCCGTTGCTTTTTTATCAGTTTTGTTTGTATCACGTTTATTCTTCCTGTAAACCGGTATCAGGCATAGT ACTTGTTCTGTATGAACTGACTTTCACATTGAAATAGGACGATGAGAATGCTCTACTACAGCAGGCCCTTGCTATGTCAA TGGATGATCCTGTGATTAACAAAGATATGAGAGATACAGATATGTCTGAAGCAGCTGCAGATGATCCTGAGTTAGCTTTA GGTGAGTTTCATGTTAATCATTTTTCATTAAGACTTCAGTGGGCGCTTTGCAATTCATCCTAGTCTTGTCATCTAAGGGC TTTCTTGTTATGTTGGTTGGTGAGTTATTGGATTATGGAATTAAGAAAATTTCTGTTTTATTTTGGTTTGGCAATAGGGA TAGAGAGTTTTCTAAGTCCCTTTGGTTTGGTTTTGAAGTGGGTATTTATGATCTAGAAGGTATTCAATTCATTACATAGG GATTGGTTTGAATGGATTTTATGCATTTTCTCATATAACTTGTGCTTTTCAAAGGCTTTGGGTTTTTTTTTTCTTGTGGT AAGCTTTGTTAAATCATGAATAAATACTTTTTCTTCTCTGAGAAGTTATGCTGATTATGAAAGCAATTTCTACATCTACG TAGAATTTACGGGAAAGTTGCAGTAGTTGTCCTGATTTTCACTGATCACTTGTCTTTTATTGCTTGGAAGCTCTCCAATT GTCAGTAGCAGATGGCAGTGAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCAGATCAGTCGTTTGTATCTT CTATCCTTGCATCGGTATGTCTGATGAATTATAAAATATAAATCCTTTATATTTTCCAGTATGTTCTTGAAATGTATAAT AATTGAATTATCTGCATTATGTTCTACAACTGCATTATAATTCTTCGCTTCTGCAGCTTCCCGGGGTTGACCCAAATGAC CCATCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAGTCTGAAGTAAGTCTTCTTTTATGGAAAATTTAATTGGGTTT GA
CDS sequence (LotjaGi4g1v0129500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTGTATTGACAATTCTGAATGGATGCGTAATGGGGACTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCTGT CAATCTTATTTGTGGTGCTAAAACCCAGTCTAATCCTGAGAATACGGTTGGAGTTCTCACGATGGCGGGGAAGGGTGTTC GTGTTTTGGTCACCCCTACCAGTGATTTGGGAAAGATCTTAGCTTGTATGCATGGACTAGAAATAGGTGGTGAGATGAAC CTAGCTGCTGGCATTCAGGTGGCACAGTTAGCTCTTAAGCATCGGCAGAATAAGAAACAGCAGCAAAGGATTATTGTCTT TACTGGGAGTCCTATCAAGCACGAGAAGAAAATGTTGGAGATGATTGGGCGAAAGTTGAAAAAGAATAGCGTTGCACTTG ACATTGTCAATTTTGGTGAAGAAGACGAGGGAAAGACAGAGAAGCTGGATGCACTCCTTGCAGCCGTTAATAATAATGAT ACCAGCCGCATGGCTCATGTTCCACCTGGTCCAAATGCTCTATCTGATGTACTTATAAGTACACCAATTTTTACTGGTGA TGGAGAGGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGCAGGTGGTGTATCTGGATATGACTTTGGCG TGGATCCGAACTTGGACCCGGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCCGACAGGAAGCAGCT GCAAAGAAGGCTGCAGAGGATGCTTCCAAGGAGAATGGTGGTGAGCAGCAAGCCAGCTCGCAGGATGCAGCCATGATTGA GCGTGCTAGTGAAGAAACTTCAGAAGCTGACGATGAGAATGCTCTACTACAGCAGGCCCTTGCTATGTCAATGGATGATC CTGTGATTAACAAAGATATGAGAGATACAGATATGTCTGAAGCAGCTGCAGATGATCCTGAGTTAGCTTTAGCTCTCCAA TTGTCAGTAGCAGATGGCAGTGAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCAGATCAGTCGTTTGTATC TTCTATCCTTGCATCGCTTCCCGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAGT CTGAAGTAAGTCTTCTTTTATGGAAAATTTAA
Protein sequence (LotjaGi4g1v0129500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMN LAAGIQVAQLALKHRQNKKQQQRIIVFTGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLDALLAAVNNND TSRMAHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAA AKKAAEDASKENGGEQQASSQDAAMIERASEETSEADDENALLQQALAMSMDDPVINKDMRDTDMSEAAADDPELALALQ LSVADGSEDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEVSLLLWKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 375 | 375 | 1.5E-233 | – | |
| SUPERFAMILY | 1 | 167 | 167 | 3.95E-35 | ||
| Pfam | 1 | 109 | 109 | 2.3E-27 | ||
| ProSiteProfiles | 1 | 183 | 183 | 10.746 | ||
| SMART | 1 | 169 | 169 | 4.4E-11 | ||
| PANTHER | 1 | 375 | 375 | 1.5E-233 | – | |
| Gene3D | 1 | 180 | 180 | 1.2E-74 | ||
| CDD | 1 | 182 | 182 | 1.78194E-104 | – | |
| SMART | 217 | 236 | 20 | 11.0 | ||
| ProSiteProfiles | 217 | 236 | 20 | 8.935 | ||
| Pfam | 219 | 232 | 14 | 0.57 | ||
| Coils | 227 | 247 | 21 | - | – | |
| MobiDBLite | 237 | 278 | 42 | - | – | |
| MobiDBLite | 252 | 267 | 16 | - | – | |
| Coils | 266 | 286 | 21 | - | – | |
| Pfam | 278 | 293 | 16 | 0.043 | ||
| SMART | 278 | 297 | 20 | 51.0 | ||
| SMART | 310 | 329 | 20 | 15.0 | ||
| Pfam | 311 | 324 | 14 | 2.8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0129500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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