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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0130200 |
| Transcript ID | LotjaGi4g1v0130200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell cycle checkpoint protein RAD17, putative; TAIR: AT5G66130.1 RADIATION SENSITIVE 17; Swiss-Prot: sp|Q9MBA3|RAD17_ARATH Cell cycle checkpoint protein RAD17; TrEMBL-Plants: tr|G7LB75|G7LB75_MEDTR Cell cycle checkpoint protein RAD17, putative; Found in the gene: LotjaGi4g1v0130200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19061489..19067268) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAGTACAAGCAGAAGGGCAAGGCCCATAGCCGGGACCCGCCAACACTGAAGGCTTCTCTCGTAAGCCATTCCAAAAG AACCCGCTCTCATAAAAACAATAAACCGCGCATTTTCTCATTTTCCGGTTCGAAACCCACCCTTTGGGGTTTTGCGACGA CACTACCCACTTCCAATTTCATTTCAAGGCCACGGTAATTTAACCCTTGATTTCTCATGGCAAAACGAAACTGCATCGTT GTTCTCTCATCGGACGATGAAGATGATGCTTCCAACTCCAACACTCCTTCACTGCGTTCCACCCGCAGCTGCACAAAGCC CAAACCGAGGTCAACAACCTCCCGAGGTCACAAGAGGGCCCGAGTTTCCCGTTCTGGACCTCACTTCTCTAAGGTTCACG AGGTATATATATATATCCATTTCCAACGAAAATCGATGCGCTAAGCTAGGTTACAATAGTTTATAATGTTTCTGTTTTAA CATTTGCTGGTTGGTAGTATGTTAATTCAGTTAGTGTGACGCGTAACTGTTACCTGAGTTCTAATTGCATTTCTATTTTC TGTTTTTGTTGTTTCACCAAAAGGGGAATGTGATGACTTCGATTTATTGCAGATCAACTTATTTGATGATGACTTCAGTC AAGTGTTTACTGGGTCAAAGGTATCTGCTGGTATGCTGTTTATTTGTTGCGTTGTTTCACACGGTTATTTGACTTGAAGC TTAGAATTTCCTTGTGTAGTATGTTATTAGTCAGCCTTACAAGTTTCAAGTCCTATTGTATTCATCTGATGTTGTCAATA GTATTGCAGTTACATCTTTTAATTATATATAGGTAGGTACTATGTTGAACCCTGACGATTTGTTAAACAAGCCTCAGTCG AAGTGCACCAACTTCTTGTGAAAACAATCCCTTTAGTAAACAATGTTAAAGCATTTCTAAATTGACAACTTCATAGGAAA AGACCCCACTTTGGTCATTTTGCTTGTATTGCTCCTATCTCAATATACCTGTCATGGATTTTAAGGTTAGAAAACGTTTA GTAGACATTACTATATAGACGGACTACATATAATCCTTATGCAGTGACATTTTAAGAATGAATGTATTTTCTTAAATAAT CGAGATGAACTTATATATGTTTTAATATTTAATGTGAGGACTTCTAAGAATCACTTGCAAGACTCCAGATGACCAGAGAC TTCGATAGTCTCTTTAAGGAAAAAAAAATGTTTTGCCTTCGGAACCTGTATAATTTTTCCTGATTCAATAAGTCATAAGT GCTAAATGGATACATCAGGTACTCAAAGGAGCAACGCAGAGGAGCTGTGGGTTAATAAATACGAGCCCCATTCACTGGAA GAGCTGGCTGTCCACAAGAAAAAGGTTAAAGCTATGATCCTTAAGTTCTTGATTGTGGTAATATCAATTCCATCCCATTT TCCCGTTTTTGTTGTATTTGCAGGTGGAAGAAGTTAAGACATGGTTCGAGGAAAGGTTGAAACCTTCAAAGGTAAATCTA GGAAAGAGTGGTAGTATTATAATCTATTATAGTGTCTCATAATTATTCTCTTGGTTTTCACCCATTATAGATTAGCCTTG TTAAGATTGTTTTTATTGTAAACTTGCAAAACAATGTCGTTAAGGATAAGGTGAATCACATGTTGAATTATCAATATTTT AAGAATGTTCTAAGTCTATTTTTCTTTTAGTTAGGAAAGAGTTTATCAATAAAATCTTTATTTCTATTTTTGTTATATTT TAATGATACGAAATATTAGGTGCTTTACTTTTTTGTATTAACTTCCCCCACTCCCTTATTTTGGCGTGGTATCTGAGATT GCCAGTACTATCATTTTATAACAATCTTTTTACTGTTCTCAGTTTAAACATCCATTTCTGGCGTATAATGAAATAGAGTT CCTGATGCAGAAATCAGAATTTTCACTTAGCAGAAAAAATATAGATTTGTTGGTTGTTGGTTATTTGAGTCTTTTCTTTT AATTTATCGCTCTTCAGTGCTTAGTTCTGGAGTTCAAATCTCTATAGGAGTTCTTTCACCAGTGCTAGGTTATACTAATA TAAGTGACTATAAATTGTTCTCTGAAATTTATATCTATTATGTTATTTGTACTCAATTGATGTTGTGAGTTCCTTTTTTT CTTTCCTTTCTTCATGGAAATTTTACAGGGTCTCAACAGAAATAATGTTCTTGTCGTCAGTGGGCAGGCAGGAGTTGGAA AATCTGTATGTAACTCTTCCGTGCTCTTATTATCCTTCTTGTACTGTTGCAGCCACATAGTACAATTTAGAAATATTAAT ATTTGGCATTTCAGGCATTCTTGGTGTCAAATCTCTTCTTATCTGCATTTTAGTTGCTTCTGTATTTTCATATTCTTATA GTTAAGATCCCACACTGAATATAGATATGACCAAAGTAGTTCTTATTAAGATTTTGACAATTCTCACCTCTTGAGGTAGC TTTGAGGTTGAGTTAGATGTAGTCCAAATTCTCGTATTAGAATCTATCGTAGATCTAATATTGGACCCAAAGTTCTGCCT TCTTTGCAGTCACCCTCCAAAATTTTGCCTTCATTGCGGTGATCCTAGGCTGCCTTCATTGCATTTGTCATTGCTACAAA CTCTACACTCCATATGTCCATTCCTGGATGCAAGAGGGTATGTTATGATCCCACATCAATTAGAGATATTGTCGAAGTGA TAGTCCTTATAGAGGCTTAGACAATTCTTTCTCTTGAGCTAGCTTTTGGGGTTGATTTAGGTCTGGCACAAACTCTAGGA ATTAACATATGCAGACATTAATTCAATTATTACTGAAATTCTGCACTTCTCTTTAGTAAACTTTTCTATGTCTCATGAAC GTGTAGAAGACTCTTAGTTATAACATTGTCATGAAGAAAACATCTTAACGTACTTTGTCAGAAATACCATATTGACATTT AAGAAGTTTTTTCTTTTCATTGTGTAGGCTACTATACATGTAATCGCAGCTCATCTGGGAGCAGTAGTATGTGGATGGAA CACGCCTACACCTGTAATTTGGCAAGAACATCTGTATAACACTGGCACAGGTGGGTAACTCCAGAATGCTGTTAATAAGC TAGTCTGAGAAAACTTGACTCTCATCCCCCTCAATCTTTCTTGTTGAATCATAGGTTTTTACTGTTAAATGGTGAAGGTC CTTGAGGATGTATTGTTAGTTTAGTCGATTAAGGTCCAAATGGGAAAATGCGTGCAAAACATCTTTGGAATGAAAAAAAT ATATTGAAATGATTGAAATTTGGTGACGTCCTTGATTGTGACCTTTTTCTATAAATTTTCTGACTTATTGACAGGGACAC GGTACACATCCAAGTTGGATGAGTTTGAAACTTTTGTTGATAGAGTACGAAAATATGGATTAATGCCAACTTCCTTTGAT GTGGAGTCAAAGCCTTCCACCATACTTTTAATAGATGATCTTCCCATGACAAATGGGAAAACTGCCTTTGAAAGACTTAA ATATTGCTTGCACCTTTTGGTGCACTCAACTCAAATACCCACAGCAATTTTGGTCACAGATTATGGCAATGTTGATTCAG CAGACTGTAATGCACGGTGCATGGAAGAACTTAAGCTATCTCTAGAGAGTTCCGGGGCTTGTAAGGTTACTTCCTTGAAA ATTTCTGCTGTGGCTTTTGATGTCATGTTACAAGAGAATACTTGTGCAATACTTAATTTTTGAAACTTCCAGGTTGCGTT CAATCCAATTACAACGAATTCGATTAAGAAGATACTCTTTAGAATATGTCAAATGGAGCACTGCGATGTGAGTGCTGATG ATGTTGATCTAATAGCAAAAGCAAGTGGAGGTGACATCAGACATGCAATTACTTCCTTACAGTTTTTCTGTCTGAAACCG AATCAAGTACATTCTTTGTCTCTATCTACTCGCGCTCCCCGTGCCTCAAAAGAGTCTAGAAATAAACCTGTGGAATTAGA TGATATGTATCCCTTGCACTTTGGCAGGGATGAGACACTTTCTTTATTTCATGCCTTGGGGAAATTTTTGCACAATAAAA GGGAGACTGGAGTTGCAATAGACTTTGGTACGTATTCATAAATAATTCATTGGAATTTAAATGGTCTTGTCTTTCTTTCT ACCTGGGGAAATAGCAAGAGCAAGAGAAATAGGTTAAGTTGAATCTCAAGATTTCTTTGTTTTGCAGTTTTAATTATAAT TTATTTTCTCATGTGGTAGACCAAGATGACTTTCTTATACGAGAGAATTTTTCAAGATTACCATTGAAAATGGATGTCCC AGAGAAGATTCTCTGTCAAGCCCATGCGCAACCTGGTCCAGTTGCTGAGTTTCTGCATGAAAATGGTATTTCCTTTCAAC ATGTTGTTGATGTTCTTTATGAAAAATTTATTGTAGTGAAGATATTCTATTCCATTTTTTTAATTTTCTAGTCCAAATCC AGTAGCTGTCTAATTCTCACTTCATAATTTCTTGCAGTTCTGGATTTTTTGAATGATGAAGCCATAGATGATGCGTGGGT TTTGTCTTCATATCTAGGGGATGCTGACATTCTTCTTGCCAAACTTCGGGGAACGTTATCTAGTAATAGTGAGGCAGAGA GTGTTTTACAATCAGCTGCTGCATCCATAGCTGTTCGTGGGGTACTATTTGGAAATTCTCATCCACTTTCCTCCAGGTTA TCACTTGTATACGTGGCTGTCTTCTCTGTATAGCAAAACTTGGTCTTTCTCTCTTAAATTTTAATCTGTTTACTTTTGCA GGTGGCATGCAATTCGTCGACCGAAGCTCTGGCATGTCGAGAAAGCATCAAGATACAACAAAGTAAACTAAACTTATTGT GGCTCTTCTCTATGTTTAATTTTATTGCAATGTTTCAAATTTCTATTCTATGTAGCTAATTTGAAATATATTCCACAGAA AAGGACTTTAGAGAGCATTATTGGAGTTTACTAGTTCAAGTTTCCTTGATAAATGCCCTTTATATGCTATTTTTCTGTCT ATACTTCTAGAAGATTTGAAAACTTGATCTTCCAGCTCATCCTTTATAACTATCTTACCAATTGCTTCATGTTTCTCTCC ACTATTAAGTTTTGACTTCAGTTCATGATCATTCCTTTGCAGAATGAAATGCTTAGGCAGAGAATCCCTGCTTATCAACG GCTTAGTTCTTATCATATGTCAATTATGGCCACAGAGTTTATGCCTATGTATAAATTGCTTGGAAATAGGGCATGTGGTG AATATGACGAACTACATCAGGAATCAGTAGAGAACTTGGATATGGAAGATTTTGAACTTGACAAAATGAGCCTAGATGAC CCAGCTATGGCGATATCCGAAGATGACATAGAAGATTGGTAGGTTTGCAACATGTAATGAGATGAGGCTGTTCAGCTTGC GGTCCTTCCTTTAATGCATATAATTAGATACCTCTGCTTTTTGTCTCCGTTGTTGATTTAGGCTGAAGCTTTTCTTAGGT TGGCAAGTTTGTTTTGGGACACAATTGCTTTTAATGAGAATGTGCTGGTGTAAATATCAATCACTTAACTTTTTTTGTAT GAAAGTAACTAAGGTAATATTTAGCACATTGATATAGAACAGAATAGACAGTAGACAGTTTGATTTATTCTCTAATTCAC ACTTCTCGTGGAGTTGAAATGTATAATTTTTTAAATTATGTTATTTTTATACTGATACCTGTTTCGCCTGTCAAATTTTA GTATTAAAATTTATATTATA
CDS sequence (LotjaGi4g1v0130200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAACGAAACTGCATCGTTGTTCTCTCATCGGACGATGAAGATGATGCTTCCAACTCCAACACTCCTTCACTGCG TTCCACCCGCAGCTGCACAAAGCCCAAACCGAGGTCAACAACCTCCCGAGGTCACAAGAGGGCCCGAGTTTCCCGTTCTG GACCTCACTTCTCTAAGGTTCACGAGATCAACTTATTTGATGATGACTTCAGTCAAGTGTTTACTGGGTCAAAGGTATCT GCTGGTACTCAAAGGAGCAACGCAGAGGAGCTGTGGGTTAATAAATACGAGCCCCATTCACTGGAAGAGCTGGCTGTCCA CAAGAAAAAGGTGGAAGAAGTTAAGACATGGTTCGAGGAAAGGTTGAAACCTTCAAAGGGTCTCAACAGAAATAATGTTC TTGTCGTCAGTGGGCAGGCAGGAGTTGGAAAATCTGCTACTATACATGTAATCGCAGCTCATCTGGGAGCAGTAGTATGT GGATGGAACACGCCTACACCTGTAATTTGGCAAGAACATCTGTATAACACTGGCACAGGGACACGGTACACATCCAAGTT GGATGAGTTTGAAACTTTTGTTGATAGAGTACGAAAATATGGATTAATGCCAACTTCCTTTGATGTGGAGTCAAAGCCTT CCACCATACTTTTAATAGATGATCTTCCCATGACAAATGGGAAAACTGCCTTTGAAAGACTTAAATATTGCTTGCACCTT TTGGTGCACTCAACTCAAATACCCACAGCAATTTTGGTCACAGATTATGGCAATGTTGATTCAGCAGACTGTAATGCACG GTGCATGGAAGAACTTAAGCTATCTCTAGAGAGTTCCGGGGCTTGTAAGGTTGCGTTCAATCCAATTACAACGAATTCGA TTAAGAAGATACTCTTTAGAATATGTCAAATGGAGCACTGCGATGTGAGTGCTGATGATGTTGATCTAATAGCAAAAGCA AGTGGAGGTGACATCAGACATGCAATTACTTCCTTACAGTTTTTCTGTCTGAAACCGAATCAAGTACATTCTTTGTCTCT ATCTACTCGCGCTCCCCGTGCCTCAAAAGAGTCTAGAAATAAACCTGTGGAATTAGATGATATGTATCCCTTGCACTTTG GCAGGGATGAGACACTTTCTTTATTTCATGCCTTGGGGAAATTTTTGCACAATAAAAGGGAGACTGGAGTTGCAATAGAC TTTGACCAAGATGACTTTCTTATACGAGAGAATTTTTCAAGATTACCATTGAAAATGGATGTCCCAGAGAAGATTCTCTG TCAAGCCCATGCGCAACCTGGTCCAGTTGCTGAGTTTCTGCATGAAAATGTTCTGGATTTTTTGAATGATGAAGCCATAG ATGATGCGTGGGTTTTGTCTTCATATCTAGGGGATGCTGACATTCTTCTTGCCAAACTTCGGGGAACGTTATCTAGTAAT AGTGAGGCAGAGAGTGTTTTACAATCAGCTGCTGCATCCATAGCTGTTCGTGGGGTACTATTTGGAAATTCTCATCCACT TTCCTCCAGGTGGCATGCAATTCGTCGACCGAAGCTCTGGCATGTCGAGAAAGCATCAAGATACAACAAAAATGAAATGC TTAGGCAGAGAATCCCTGCTTATCAACGGCTTAGTTCTTATCATATGTCAATTATGGCCACAGAGTTTATGCCTATGTAT AAATTGCTTGGAAATAGGGCATGTGGTGAATATGACGAACTACATCAGGAATCAGTAGAGAACTTGGATATGGAAGATTT TGAACTTGACAAAATGAGCCTAGATGACCCAGCTATGGCGATATCCGAAGATGACATAGAAGATTGGTAG
Protein sequence (LotjaGi4g1v0130200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKRNCIVVLSSDDEDDASNSNTPSLRSTRSCTKPKPRSTTSRGHKRARVSRSGPHFSKVHEINLFDDDFSQVFTGSKVS AGTQRSNAEELWVNKYEPHSLEELAVHKKKVEEVKTWFEERLKPSKGLNRNNVLVVSGQAGVGKSATIHVIAAHLGAVVC GWNTPTPVIWQEHLYNTGTGTRYTSKLDEFETFVDRVRKYGLMPTSFDVESKPSTILLIDDLPMTNGKTAFERLKYCLHL LVHSTQIPTAILVTDYGNVDSADCNARCMEELKLSLESSGACKVAFNPITTNSIKKILFRICQMEHCDVSADDVDLIAKA SGGDIRHAITSLQFFCLKPNQVHSLSLSTRAPRASKESRNKPVELDDMYPLHFGRDETLSLFHALGKFLHNKRETGVAID FDQDDFLIRENFSRLPLKMDVPEKILCQAHAQPGPVAEFLHENVLDFLNDEAIDDAWVLSSYLGDADILLAKLRGTLSSN SEAESVLQSAAASIAVRGVLFGNSHPLSSRWHAIRRPKLWHVEKASRYNKNEMLRQRIPAYQRLSSYHMSIMATEFMPMY KLLGNRACGEYDELHQESVENLDMEDFELDKMSLDDPAMAISEDDIEDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 10 | 54 | 45 | - | – | |
| MobiDBLite | 14 | 38 | 25 | - | – | |
| PANTHER | 26 | 584 | 559 | 1.5E-151 | – | |
| PANTHER | 26 | 584 | 559 | 1.5E-151 | ||
| MobiDBLite | 39 | 54 | 16 | - | – | |
| Pfam | 87 | 263 | 177 | 5.3E-21 | – | |
| Gene3D | 89 | 271 | 183 | 2.6E-17 | – | |
| SUPERFAMILY | 90 | 337 | 248 | 1.25E-19 | ||
| CDD | 289 | 334 | 46 | 1.49987E-10 | – | |
| Gene3D | 291 | 347 | 57 | 1.0E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0130200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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