Domain Predictions — View

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cd18140

Source: CDD

Description

HLD_clamp_RFC

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0160400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit 5; TAIR: AT1G77620.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q96QE3\|ATAD5_HUMAN ATPase family AAA domain-containing protein 5; TrEMBL-Plants: tr\|K7M6V1\|K7M6V1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0160400	Domains G3DSA:1.10.8.60 IPR004582 IPR027417 PTHR12172 PTHR12172:SF4 SSF52540 cd00009 cd18140 mobidb-lite	9
LotjaGi1g1v0259500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C large subunit; TAIR: AT1G77620.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q4QY64\|ATAD5_MOUSE ATPase family AAA domain-containing protein 5; TrEMBL-Plants: tr\|G7J301\|G7J301_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein, putative; Found in the gene: LotjaGi1g1v0259500	Domains G3DSA:1.10.8.60 IPR004582 IPR027417 PTHR12172 PTHR12172:SF4 SSF52540 cd00009 cd18140 mobidb-lite	9
LotjaGi1g1v0261200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp\|Q6YZ54\|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr\|A0A0B2QNG7\|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR008921 IPR013748 IPR027417 PF00004 PF08542 PTHR11669 PTHR11669:SF9 SM00382 SSF48019 SSF52540 cd00009 cd18140	17
LotjaGi1g1v0264700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q9FXM3\|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr\|I3SKP0\|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR008921 IPR013748 IPR027417 PF00004 PF08542 PTHR11669 PTHR11669:SF20 SM00382 SSF48019 SSF52540 cd00009 cd18140	17
LotjaGi1g1v0264700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit; TAIR: AT1G21690.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q9FXM3\|RFC2_ORYSJ Replication factor C subunit 2; TrEMBL-Plants: tr\|I3SKP0\|I3SKP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0264700	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR008921 IPR013748 IPR027417 PF00004 PF08542 PTHR11669 PTHR11669:SF20 SM00382 SSF48019 SSF52540 cd00009 cd18140	17
LotjaGi2g1v0111100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi2g1v0111100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi2g1v0111100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp\|Q8VXX4\|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr\|I3SC80\|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR008921 IPR027417 PF13177 PTHR11669 PTHR11669:SF1 SM00382 SSF48019 SSF52540 cd00009 cd18140	14
LotjaGi4g1v0130200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cell cycle checkpoint protein RAD17, putative; TAIR: AT5G66130.1 RADIATION SENSITIVE 17; Swiss-Prot: sp\|Q9MBA3\|RAD17_ARATH Cell cycle checkpoint protein RAD17; TrEMBL-Plants: tr\|G7LB75\|G7LB75_MEDTR Cell cycle checkpoint protein RAD17, putative; Found in the gene: LotjaGi4g1v0130200	Domains G3DSA:1.10.8.60 G3DSA:3.40.50.300 IPR004582 IPR027417 PF03215 PTHR12172 PTHR12172:SF0 SSF52540 cd18140 mobidb-lite	10
LotjaGi4g1v0221000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Replication factor C subunit; TAIR: AT1G63160.1 replication factor C 2; Swiss-Prot: sp\|Q9CAM7\|RFC2_ARATH Replication factor C subunit 2; TrEMBL-Plants: tr\|V7CBL1\|V7CBL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0221000	Domains G3DSA:1.10.8.60 G3DSA:1.20.272.10 G3DSA:3.40.50.300 IPR003593 IPR003959 IPR008921 IPR013748 IPR027417 PF00004 PF08542 PTHR11669 PTHR11669:SF5 SM00382 SSF48019 SSF52540 cd00009 cd18140	17
LotjaGi6g1v0015100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromosome transmission fidelity factor, putative; TAIR: AT1G04730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q6NU40\|CTF18_XENLA Chromosome transmission fidelity protein 18 homolog; TrEMBL-Plants: tr\|K7LIZ1\|K7LIZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0015100	Domains G3DSA:1.10.8.60 IPR003593 IPR003959 IPR027417 PF00004 PTHR46765 SM00382 SSF52540 cd00009 cd18140 mobidb-lite	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09