Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0130400 |
| Transcript ID | LotjaGi4g1v0130400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19089941..19094961) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGATATTCTATGGTTGGCTGCATTTTCTTTTATGGTGGCATGATGATAAAACTATAGGCTTAGGCTATTTTGATCTT ACTATTTGTACTTTCTGTTGTGTGCTATCCTGATGATATTCGAACCATGCTCCTGGGTTCTATTTATTTATTGTAAGCTG AAATTTTAACTCATACTATATAGTTCACTGCTCACTTCTCAGATAAGTTAAGTTTCATTCCAGCTAAATGTTGTACAAAT TATAACTTTAGATATAAATATCTTAGTGTATTGTGTGATTCTGAATGGTTGGTATTATGTTGGGCAGGATCGATTGAGAA TTGACAGGCTTTTGTCAATTTGGGGAAATTGAAAAAAAGCTGGGAACTCTGTCAAAATTATCATTAAAATTTGCAACTAA ATCTAAAAAAAGTGTGGGAATTTCCTCCGCATAGATTCTTGGTATCTTGCTTATTAAGATAAAGTACTTTTACTTTATAT TTTTATTATTAATTGATTTACTACTGGTAGCATAGGACTAAGGTGTTACAAGTATTGTGAGGTGTGATCAATGGCGTCTA GACCAGAGTTCGTGGCACCGCCAGAGATATTCTATGACGATGCTGAAGCACGCAAGTACACTTCTTCTTCCTGTATTAAT TATTCAAATTCAGGTTTCCTCCTTTTTCTTCTCATTCTGTTTCTTCGTTATTCAGTTTACTCTTGTTTATTCTTGAAATC CATTGTAATCTGATTTGTTGTGTGTTAAAAAAGGCAAGTCTGTCAGAGAGAGCCTTGGAGCTACTTGCTTTGCCTGATGA CGGTGTTCCTGAATTACTTCTTGACATTGGTAATTTAATTTTTAATTTGGTTTGGTTACATTATTTTATCTCTGTCGTGT GTTCTATCTCATTCATGAAACAATGGGCTAGGTTGTGGATCGGGACTTAGCGGCGAGACACTCTCAGAGAATGGACACAA TTGGATTGGTCTTGACATTTCTCCTTCCATGCTTAGTATGTTTTCCCTTTTCTATTCTTTAGAATTTTGTTATTTTTATC TATTTTGCATTTCGATTTTTTTTTTTAATTTTTTTCTGAACTCAGATATTGCGCTGGAGCGAGAAGTTGAAGGTGACCTT TCAGTGGGTGACATGGGTCAGGTATACTATCAAGTATCGATATAATTTTTGCTTTATCAGAAGTATTATTATTTATTGAA ATCTAAGCTTAATGTTAGCCATGCTCTAAACACTTGCAGACTCGCAGTTTCCTTTTCGATGTTATCAATACTCTTTTGTA GTTTTATGGTTTATCTCAGCATGATGTTTATGTGCTTCGAATAAGTTCTTCCTAGGAAATAAAAACTTTGACGCGCGGGG CCGACGAGGGCGGAGAGTGATCGTCGGTGCAGTGAGGCACGGACAAGGAGCGGCTCCTGGCAGGCTTCCGAGACTGTATA GGGATGGACTATACAGTTGAGGAGGGCATAAAAGATTTGATTGATACTACTCATAACCAGGGGCGGACCCACAGCTAAGT GAGGGGGTTCAGATGAACCCCTGAAAAAAAAAAGTTTCTACTTACCCCCTTATATAGTTTTTTTTTAACCCCCTGAGATT TTTAATTTGCACCCATAGACCCCACTTACACCTCTCTCTCTCACACACTCACCAACTCACTCACTCTCACCTCACGAGTC TCTCACTAGGTCTGGCCGTCATCACTCATCAAGCACACAACACGAGCACGGCGCACCACCGGCCACCAGCCCACCACCGT CCACCAGTCCACCCGCGCGCCTCTCTATCTCCGTATCTCACGAGAGGGTCACTGCTCTGCGTTTGAAATCTGCACTCAAC TCTCAAGGTTTCTTTCTTTCTGATTTATTTTTGGTATGAATGTGAATATGTGATGGTGGATGTGGAGTTTCATTGAGTTG GTTTTGATGTTTTTGAGAAATCAGAAATGGGTTTATAGTTGTGTTTTTGTGCAATGTTCGTTTGGATGGTTTTAGATTGA TAGAAATCATAGAATGATAGTGTTTGATTGTATGGCCATGTAGGAGTTTCTGTGTTTGATTGATTGAATGTGGAGTTCAA TTGATTTGGTTTTGGTAGTAAACTAACTATTTGGATGAATTGTGATGACAGTGAAAAACAATGAGGAAGCTAAAGTTCCA TGAGCAGAAGCTTCTAAAGAAGGTCAATTTTTTGGAATGGAAGCGAGAAGGAGGTCACAGAGAGAACCTCGTTATGCAGC GCTACCACGTTACTGGACGAGATGATTACAAAAAGTAAGTATTATCATAACTCATCATATTTATATTCTTCTCTAATTTC CTTTATTTACTTACTTGGTTTTCGCTGATGCATTTTCTTAATTGAAATATGAATAGATATTCAAGTTTATGCGGAATGGT TCAGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGATCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAA AGCTGTAAGTTCACTTTAACTAACTAAACTTTTAGGCATAAGATTTACCCCATTCAGTTTTATTCTTTAATGTTGTTGTC AAACCCCTCAAATCTATTTGTGCTTAAGCTTTCATTTTAACTTGTATGCATTTGACTATCTAAATTCAATTAACTGAAGT TGCGTATATGTATAAATCGTTGGATGGTTTTTGTTGATCAATTATAATTTATCATATAAATAATTAATGTATGTGATCTA ATGAAAAATGATAAAAATATGTAACCTCTTGCAAATTGCAATTTCTCTTTGGTTCTTTTGGCTCCTCCTGATGATCATGG GTTTGTTATGGATATATCATTATACCTCCATGTCAAGAAGTATCGTCCATCCAGTTTCAATTTGAATTATTGTCCTGGTT GAGGGGCCTCTTTCTTTTTGTTTCTTCTTGGTATTAGTTTGAATAAAAAAGATGTAACTATGCATTATAAACTACTTACA CATATCTGTTTCTTTCTTGTGTTTGAATGACAGTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTG AACACTTAACTGTGTCATCCTTCTGTAGGTAAAAAGATAACTTTGCTGCATTTGTTGCTTTAAATCGAAATTGAAATGTT AACTTTATTTGCTTTCTCATTAGAATGTTTATGTGAAAATATAGCAATAGAAAGAAGCAAAATGATATTTGATTTTTAAG ACGACTCTATTAAGACTCCAGAACTAGGAGCAAACACATTAATTGCCATCTATAAGTGTTACTATTCAAAGCTCTGGCTC CAGAGCTGTGATTAACCAAAGGAAAAGAGAATAGAGATAAATTTTTAAAATTAGAAAAGGATAACCGGCTCTCAACCTAT GATAGCAGGTCATAAAGAGGTTGTGAAACTCTGCACAAAAAATAATTGTGCATATCATGAACCCATGCGTGTGCATCTTG AAACCTCAAACTTAAAGTGCCTACCAAACTCAAATTTTTGGTTCATTCTACTCTGTTTGCTCATGGTTCCATTTCGTCAC GTGTGGTAAGTTCCAAGCTGTTAGGCTAGGATTTTTGTTATTAAATTCTGAACCACACCTGAGATGCTTACTGTATGTTG CCCTTTTTCCCTGTGAAGTTATATGGTTTTAGATTAAGTAAGGATGGGAAAGAAAGAATAAGGACTTTAAATTGTGATTA TGGTTTGATTTTATAAAAAGGGCAGATGGAAATCTTAAATGATGTCTCAATTTTCTGTCCCACCAATTAAATTTTGACAT GTTATATTCTTACTTTTGCCATCATTCACCATCCCAGACAAACATCAACCTAGACTTCAGCTCCTCTTCCACTTTATTGG CCTTCTTAGCTTCCAAAGTCACTATCTCACCATCATAGTAATGGGTCTTATTCTAATCCAGCTCCAGCAACAACAATTCT GTCCTGTGCATTGGCACAATGGATGATATTTGTCACCACAGTGAAAACAGAATCCCTGCGCCCTCCTCTCCATCAGCTCT GGATGAGAAATGTGAAATATGTTGAACTCCTTTCAATTTGTCAGACACAGCCCTCTGGTCGCCCTCCTTTTGCTTTGCCA TTGATTACGTTGCGGGGGCGATAGGCTTCTTCTAGGAAGCTCTGTAAAAAACCCCTTCTTGTGTCCCAGTGCTATAAAAG ATCTTACACTATACACCTTAAATCCCTAACTCCATTTTATTTTAATTCCCAAATAGCTGAGTAGTGAGTATTGATCAAAC TGTTACGCTGGTTAGTTTAACTCCTAAACTAGTCATGCCAGTGAGAGTTCCTTTATAACGGAGTTCACAAAAAATAGTAG ATTTTTTTTGTACTGCTACTTTCTATTGTATTGACCTCTTTTGTTCCAGATTATTACTGAACTTTCTTTATGTTGCAGGC GTAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACATATATTGAGCAGGGGCAT GTGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGA TTCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGATGACTATGATATAATGAATTAAGTGGAAAGCC TAGGGCTTTGGCTTATTGTGGGTAGAGCAATTTCTTGTTATAGACGTGGGTGAATGAAGACTACATAGAATTGTAGGATG AGTTTGTGTTTTTTTTTTTGCGGCTATTCTAGGAAAGCTTGGATTTTAACTGGTTATTTTTAATTCCATATTAAGATTGA GTAATGAACCTAGAATCTAGTGCATCATGATCCATGATGGTGGTGTTAAATCTTTAAAATATGTATTTTGCATTTTCAGT GGATGATGAGCCATTGTGTTTGATCTGGAATAGGATACAGAGTAAAGGATTTGCAAGAACAAAAGTCTAAATCGTCCTTT CAACTAGCTAAGCTAGCAATTTACAACGTAGTCTCAGAATTTCCTTATGAGAGTTTCTTTC
CDS sequence (LotjaGi4g1v0130400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTCTAAAGAAGGTCAATTTTTTGGAATGGAAGCGAGAAGGAGGTCACAG AGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGAGATGATTACAAAAAATATTCAAGTTTATGCGGAATGGTTC AGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGATCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAAAG CTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACACTTAACTGTGTCATCCTTCTGTAGGCG TAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACATATATTGAGCAGGGGCATG TGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGAT TCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGATGACTATGATATAATGAATTAA
Protein sequence (LotjaGi4g1v0130400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEK LYNMGVIPTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVD SSKIKRKVLKYNDKLDDYDIMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 181 | 181 | 1.6E-87 | – | |
| PANTHER | 1 | 181 | 181 | 1.6E-87 | ||
| SMART | 3 | 106 | 104 | 1.5E-26 | ||
| Pfam | 3 | 62 | 60 | 5.7E-8 | ||
| SUPERFAMILY | 26 | 175 | 150 | 4.71E-18 | – | |
| SMART | 107 | 170 | 64 | 6.5E-8 | ||
| CDD | 107 | 175 | 69 | 6.49123E-8 | ||
| ProSiteProfiles | 107 | 173 | 67 | 11.982 | ||
| Pfam | 107 | 153 | 47 | 2.7E-11 | ||
| Gene3D | 108 | 180 | 73 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi4g1v0130400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…