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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0130400 |
Transcript ID | LotjaGi4g1v0130400.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19090332..19092821) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTCTAAAGAAGGTCAATTTTTTGGAATGGAAGCGAGAAGGAGGTCACAG AGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGAGATGATTACAAAAAGTAAGTATTATCATAACTCATCATAT TTATATTCTTCTCTAATTTCCTTTATTTACTTACTTGGTTTTCGCTGATGCATTTTCTTAATTGAAATATGAATAGATAT TCAAGTTTATGCGGAATGGTTCAGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGATCCTGTTCGGGTCGATAT GACTGATAAGCTTTTGGAAAAGCTGTAAGTTCACTTTAACTAACTAAACTTTTAGGCATAAGATTTACCCCATTCAGTTT TATTCTTTAATGTTGTTGTCAAACCCCTCAAATCTATTTGTGCTTAAGCTTTCATTTTAACTTGTATGCATTTGACTATC TAAATTCAATTAACTGAAGTTGCGTATATGTATAAATCGTTGGATGGTTTTTGTTGATCAATTATAATTTATCATATAAA TAATTAATGTATGTGATCTAATGAAAAATGATAAAAATATGTAACCTCTTGCAAATTGCAATTTCTCTTTGGTTCTTTTG GCTCCTCCTGATGATCATGGGTTTGTTATGGATATATCATTATACCTCCATGTCAAGAAGTATCGTCCATCCAGTTTCAA TTTGAATTATTGTCCTGGTTGAGGGGCCTCTTTCTTTTTGTTTCTTCTTGGTATTAGTTTGAATAAAAAAGATGTAACTA TGCATTATAAACTACTTACACATATCTGTTTCTTTCTTGTGTTTGAATGACAGTTACAACATGGGTGTGATTCCAACCAG GCAAAGCATCACACAATGTGAACACTTAACTGTGTCATCCTTCTGTAGGTAAAAAGATAACTTTGCTGCATTTGTTGCTT TAAATCGAAATTGAAATGTTAACTTTATTTGCTTTCTCATTAGAATGTTTATGTGAAAATATAGCAATAGAAAGAAGCAA AATGATATTTGATTTTTAAGACGACTCTATTAAGACTCCAGAACTAGGAGCAAACACATTAATTGCCATCTATAAGTGTT ACTATTCAAAGCTCTGGCTCCAGAGCTGTGATTAACCAAAGGAAAAGAGAATAGAGATAAATTTTTAAAATTAGAAAAGG ATAACCGGCTCTCAACCTATGATAGCAGGTCATAAAGAGGTTGTGAAACTCTGCACAAAAAATAATTGTGCATATCATGA ACCCATGCGTGTGCATCTTGAAACCTCAAACTTAAAGTGCCTACCAAACTCAAATTTTTGGTTCATTCTACTCTGTTTGC TCATGGTTCCATTTCGTCACGTGTGGTAAGTTCCAAGCTGTTAGGCTAGGATTTTTGTTATTAAATTCTGAACCACACCT GAGATGCTTACTGTATGTTGCCCTTTTTCCCTGTGAAGTTATATGGTTTTAGATTAAGTAAGGATGGGAAAGAAAGAATA AGGACTTTAAATTGTGATTATGGTTTGATTTTATAAAAAGGGCAGATGGAAATCTTAAATGATGTCTCAATTTTCTGTCC CACCAATTAAATTTTGACATGTTATATTCTTACTTTTGCCATCATTCACCATCCCAGACAAACATCAACCTAGACTTCAG CTCCTCTTCCACTTTATTGGCCTTCTTAGCTTCCAAAGTCACTATCTCACCATCATAGTAATGGGTCTTATTCTAATCCA GCTCCAGCAACAACAATTCTGTCCTGTGCATTGGCACAATGGATGATATTTGTCACCACAGTGAAAACAGAATCCCTGCG CCCTCCTCTCCATCAGCTCTGGATGAGAAATGTGAAATATGTTGAACTCCTTTCAATTTGTCAGACACAGCCCTCTGGTC GCCCTCCTTTTGCTTTGCCATTGATTACGTTGCGGGGGCGATAGGCTTCTTCTAGGAAGCTCTGTAAAAAACCCCTTCTT GTGTCCCAGTGCTATAAAAGATCTTACACTATACACCTTAAATCCCTAACTCCATTTTATTTTAATTCCCAAATAGCTGA GTAGTGAGTATTGATCAAACTGTTACGCTGGTTAGTTTAACTCCTAAACTAGTCATGCCAGTGAGAGTTCCTTTATAACG GAGTTCACAAAAAATAGTAGATTTTTTTTGTACTGCTACTTTCTATTGTATTGACCTCTTTTGTTCCAGATTATTACTGA ACTTTCTTTATGTTGCAGGCGTAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGA CATATATTGAGCAGGGGCATGTGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAA GACTTTGTGACATGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGATGACTATGATAT AATGAATTAA
CDS sequence (LotjaGi4g1v0130400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTCTAAAGAAGGTCAATTTTTTGGAATGGAAGCGAGAAGGAGGTCACAG AGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGAGATGATTACAAAAAATATTCAAGTTTATGCGGAATGGTTC AGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGATCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAAAG CTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACACTTAACTGTGTCATCCTTCTGTAGGCG TAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACATATATTGAGCAGGGGCATG TGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGAT TCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGATGACTATGATATAATGAATTAA
Protein sequence (LotjaGi4g1v0130400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEK LYNMGVIPTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVD SSKIKRKVLKYNDKLDDYDIMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 181 | 181 | 1.6E-87 | – | |
PANTHER | 1 | 181 | 181 | 1.6E-87 | ||
SMART | 3 | 106 | 104 | 1.5E-26 | ||
Pfam | 3 | 62 | 60 | 5.7E-8 | ||
SUPERFAMILY | 26 | 175 | 150 | 4.71E-18 | – | |
SMART | 107 | 170 | 64 | 6.5E-8 | ||
CDD | 107 | 175 | 69 | 6.49123E-8 | ||
ProSiteProfiles | 107 | 173 | 67 | 11.982 | ||
Pfam | 107 | 153 | 47 | 2.7E-11 | ||
Gene3D | 108 | 180 | 73 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi4g1v0130400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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