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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0134800 |
| Transcript ID | LotjaGi4g1v0134800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT3G51480.1 glutamate receptor 3.6; Swiss-Prot: sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6; TrEMBL-Plants: tr|A0A0B2S0T6|A0A0B2S0T6_GLYSO Glutamate receptor; Found in the gene: LotjaGi4g1v0134800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19659337..19664888) extracted from Lotus japonicus Gifu genome v1.2.
ACCTACCCCTCTCTCTAATTGTGTTGTTTAACATCCACAGAAACAGTGGGTTAAACTTAAAGGACATATCCCTATCCCTC CAAGAACATAAGTTCACATCACACTCCCAATCCCACTTTGTGTTTTAGTGTCTAGTGCCATTCTCCAATATTATCTTCAA CTGAATGAGGACATTCTCCTACATGAACCTTCACCACTCCAACTCCAAAGCCATTGATGCCAAGGGCCACTTTTGGGTTT GGTCCTCTAATAAAAAACAAAAAGGAAAGGACATTTGCAGGTGGGTAACATTTATTTTTTAATTTTTATGGATACTATTC TCAGTCACTACACCATCATTAATACCTCCTTTGAAGATCTACCCTGAATTTTCTCTAATATTCTATTATTGGTCTTTTGC TGCTTTTGATTCTTCTTCCCTCTGCTTAAAGTTGATGTTTTTGTTTTAGTACGTGCAAAGTTTATCTTTTTATGCTCAAG TTGAACCAAGCATTCATAAATGTTTGGAAATGCTTCTTGAATTGATTCTAAAGCCAAAGAGAAGTTTTTATGAGTAGCTT TTGGTTTCATAATTGATTATGTGAACAGAAAAGTTGATCCAAACATGCCATTAGAGGTTTCTGCACCATTTTGCTACCCA ATATAGATGTCAGTTCTTATATTGTGAGCCAAACTTCAGGTGCATTCCATCTTTCTGAATAAAGTCTTGTTATTTCCCTT TGCAATCTGATTTTTCTTTTTCTTTCTTTTTCCTTATTTTAATGGGAGGTGCCTTAGTGCTTTATACTTTACCGTCTTGG TTGTCTTTCAGACACACTTTGCGTATATTGCCATGTTATTATTTATGCTTGACTTTGTGAGCTTTATTCACACTTTGACA AGATTGTGTTTAGCTTCATATTTTCTTAATCTTTGTTCTTTGCTTTGATTTTTGAGTATGCTGCTTTTCTTGTTTGTTGA ACAGGGTGAACCATGATTTGTGTTTGGGTTGTTATGGTATTGGTGGTTCTCTCCAATGGATGGTTCTCTTCAAATGGGGT TGTTGCCATGGATAATTCCACAGTACCTGCTTTTGTCAATATTGGGGTTCTCTACTCTTTCAACACCAGTGTTGGTAGAA TTGTGAAAATTGCTGTTGATGCTGCTGTTCAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTGAGTTAAGGGTC TCACTGCAAGAAGATTCCAAATACAGAGGTTTTCTGAGCATTGCTGAAGGTATGTTACTGTGTTCTCCATAGTACTCCTA TTTTCTGTGTGTTCAAACTTAAGAACTCAACTTTTTTAGCTAGAAAAGTTACTTACTAGTTCGACAGATTGTAATTCTTG TTGCAAATGAATTGTGTAACAGCCTTGCAGCTCATGGCAACACACACCGTAGCCATAATTGGCCCCCAGACCTCTACAAC AGCTCATGTCATATCTCATATAGCGAACGAGCTCAAAGTTCCTCTGCTATCATTTTCAGCCACTGACCCTACCCTTTCTT CGCTTCAATTCCCGTTCTTTATAAGAACTGCTTTTAGTGACATGTATGAAATGACCGCGATAGCAGACTTTGTTAACCAC TTTGGATGGAGAGAGGTTATTGCTGTCTATGGTGATGATGACCATGGGAGGAACGGGATCGGCTCATTAGGGGATAAGCT TGCTGACAGACGTTGCAAGATCTCATTTAAAGCGGCAATGACACCTGAGGCGACCAGGGAGGAGATCACTGATGTGCTTG TTCAGGTGGCTTTAGCCGAATCCCGAGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCGAAAGTGCTGAGTGTGGCA AAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATTGCCACTACTTTTCTGTCTAGTTGGCTGGACATAGCTAGTCC CCTCTCACCGGATGAAATGGATACGATTCAAGGAGTTGTTACTTTTCGTATGTACACACCTGATTCGAAGCTCAAAAGAT GGTTTGTTTCTAGGTGGGCAAATTTGACTAGTGGAAAGACTGATTATCCCCTTGGTTTAAGTACTTATGGTATCTTTGCA TATGACACTGTTTATGCCCTTGCTCATGCACTTGATGCTTTTCTCAAACAAGGGAACCAGATTACATTTTCACATGATCC AAAGTTATCTGCACTGCAAGGAGGCAATATGCATCTTGATGCTGTGAAAATCTTCAATCAAGGAAATCTGTTGAGGAAAA GTATTCATGAGGTTAACATGACCGGGGTGTCAGGTCCATTCAGCTATGATTCTGATGGAAACCTTGTTAATCCAGCATAT GAAATCATCAATGTGATCGGAACAGGGGTACGAAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCC AGAAGCACTTTACTCAAAACCAGCTAATCGTTCTAGCGCAAATAAAAAACTACTCCCTGTGTTTTGGCCAGGGGAGACAA CCCAGAAGCCCCGCGGTTGGGTTTTTCCAAACAATGGAAGACTGCTAAAAATTGGAGTGCCGAAAAGGGTTAGTTATCGC GAATTTCTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGAGGTGTTTCTTTCTGCAGCAAACTTGTT GCCCTATGCTGTCCCCTATAAGTTTATTTCATATGGGGATGGTAAGAGTAATCCTAGTAACACTGAGCTTGTGCGTCTTA TCACTGCGGGCGTGAGTATCGTTCCAATCATTGTTGTGTAGTTTCTTGGGATGTTTTATGGTACGTTTGTGAGACCAGTT TTCTTCTTACCATACAGGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGCTGGTGGATTTC ACTCAGCCATATATTGAATCAGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGAATCCAATGCTTGGGCATTTTTGAC GCCATTTACACCAATGATGTGGACTGTCACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAACATA GGCTGAATGATGAGTTTAGGGGACCTCCCAAAAAACAAATTGTCACCATTTTGTGGTAATGAAATCTGGTATTTTTCAGT TTTTCTTCCTCCTCCCTTTTCTATGGCTCACCATACTAAACCTTTTTCGAACCAATCTATTGCTGATGCATGCAAAAATT ATATCAATGTTATAGTTTTCTGGTAGCTCTCAGGATATGTTTATGACTTCTGTTTGACCTTGTGTTTTATTTGACAGGTT TAGCTTTTCAACTATGTTCTTTGCTCACAGTAAGTGTCATTTCTTTAGTTTCATTTGGCAGCTAGCTACTTTGAAATAAT AATCAACTAGCTCTTTTCTATACTGTGCAGGGGAAAATACAGTTAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGCTA TTTGTAGTTCTAATAATTAACTCAAGTTACACGGCAAGCCTGACTTCAATCCTCACTGTACAACAACTTTCTTCACCTGT TAAAGGCATTGAAAGTTTAATAAGTAGCAAAGAACGTATAGGCTACTTGCAGGGTTCTTTTACTCGAACTTATTTAATTG AGGAAATGGGTATTGATGAATCCAGACTAGTTCCTCTAAAAGACCCTGAAGAAACTACCAAGGCACTGGAAAAAGGTCCA CATAAGGGTGGTATTGCTGCATATGTCGATGAGCGTGCTTACATAGAGCTTTTCCTTTCGACTCGGTGCGATTTTAGTGT TATAGGCCAGGAGTTCACCAGAAATGGTTGGGGATTTGTAAGTTTCTCCTTAATACTTGGCCATTACAATTTGATTTGCT TCCTCTAAAGCTATTATAATCTGATTCCATCTTACCATGTTGCTTTTTTTAATTTTAATTTGATGTGGTAAGATAGTATG ATTGGACGTCTGCGTAAATACACTGTCGGTGTAGTTATTAAGCTCACTATGTTTTGCAAGATTGCAAGAGCATATTTTCT TACTTAACTACTAAAAGAGTTCAACTTGCTATTCTTTTTGAAAAAGGATAGCGACAAACTATCCAACACATTCCTTTTGT TGGGTGGAATGTGGTATCGACTATCGACTAAATCATATTTCACACCCCCAAGTTGATTGACCATGCTCCTTATTTGGCCG AATCATGAATTTCAACTAATAAAAAAAGAATGTGTTGAGAAATGAGTCTTACAGAATAAATTGCTAATATTTCTCAATCG AAAATGGTAACAAATAGTTGTCTGGACATTATCTTCCCTACATTTTAAAGTTTGATCAAGGTTACTTTACCATGCTTAAT TGTTGGTTTGGTTCCCTTGTTATTGTTGGTTTGGTTCCCTTGTTTTTTAGTTGTCAAAAAATGATAGTATCTGTCCATTT CTTGTTTTCCATTTTTCTACAGGCCTTTCCACGAGACTCACCATTAGCACTTGACATGTCAACTGCAATTCTGGAATTGG CAGAAAATGGAGATTTGCAAAGGATCCATGATAAATGGCTTCTGCGGAGAGCTTGCCTATCACAAGGTGCAAAGCTTGAA GTGGATAGGCTCAATCTCAGAAGCTTTTGGGGCCTCTACTTAGTCTGTGGGTTGGCATGTTTACTTGCTCTACTCATATA TCTTTTTCAAACCCTGCGGCAGTATAAGAAGCACGGCCCGGAGGAACTTGAGTCTTCTTCTGGTCAAGGCGCATCAGGAT CTACACGATTGCAAACTTTTCTTTCATTTGTTGATGAAAAAGAAGAGATAGTTAAGACCCGCTCCAAGAGAAGACAAATG GAGAGGATATCATATAGAAGCACAAGTGAGGTTGGATCATCCATCATCTCCAATAAAGAATTTTCTCTCTCGTCGTTAAG CAGAATTGATTCAGCTAATGAAGTCTAACTTAATAGCATGTTTGGTTCCACGGTGGTGAAATGCTTTAGAATCAATTCTG GTTAGAAGCTACAAGTCTTAGCTTCTGAGTAAATGTGTTGATTCTGCGCAAATCATGAAACCATACATTCTATTACTACT GCCTATTATTTGCTCCACATAATTTTGTACCCTGTTCTGCTAGCTCCTTCACCATCACTCTTCAATCTTCATTCCCTATA GCAGGTTTCTACTATCATTTTTGTTACCTTTTTAGTACATATATATGTAACATGTTCCAATTTGTGTATGACTGTAGTAT ACGAAAGCGGGCAACAAGGTGCCTTTGCAACTTTTAACTTTTTAAATCCTACTTATGGTTCATGTAGAATACATGATTCA GAACCAAATCGTCTCATCTCATTATTATTTAGAGTGCAGCATACTAATTGTGGATTCTCATCTCGTGGAGTGTAGCATAA TAGCTGATATTTAGAGATAATCTGGTTGTTAGTAGGTCTCTTGGTGGTTGTTCAAGGTGATTGTTTGTGAGTTTTAGTTT TCAATTTTCAATTTTTAATTTGAAAATAAAATATGATTGGTAAATTTGGAGATGGTTTCAAAACAATTTCAACCTGATTT AAAATTCATTAAAAGGTTGATTGTAGTTTAGT
CDS sequence (LotjaGi4g1v0134800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTGTGTTTGGGTTGTTATGGTATTGGTGGTTCTCTCCAATGGATGGTTCTCTTCAAATGGGGTTGTTGCCATGGA TAATTCCACAGTACCTGCTTTTGTCAATATTGGGGTTCTCTACTCTTTCAACACCAGTGTTGGTAGAATTGTGAAAATTG CTGTTGATGCTGCTGTTCAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTGAGTTAAGGGTCTCACTGCAAGAA GATTCCAAATACAGAGGTTTTCTGAGCATTGCTGAAGCCTTGCAGCTCATGGCAACACACACCGTAGCCATAATTGGCCC CCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCAAAGTTCCTCTGCTATCATTTTCAGCCACTG ACCCTACCCTTTCTTCGCTTCAATTCCCGTTCTTTATAAGAACTGCTTTTAGTGACATGTATGAAATGACCGCGATAGCA GACTTTGTTAACCACTTTGGATGGAGAGAGGTTATTGCTGTCTATGGTGATGATGACCATGGGAGGAACGGGATCGGCTC ATTAGGGGATAAGCTTGCTGACAGACGTTGCAAGATCTCATTTAAAGCGGCAATGACACCTGAGGCGACCAGGGAGGAGA TCACTGATGTGCTTGTTCAGGTGGCTTTAGCCGAATCCCGAGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCGAAA GTGCTGAGTGTGGCAAAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATTGCCACTACTTTTCTGTCTAGTTGGCT GGACATAGCTAGTCCCCTCTCACCGGATGAAATGGATACGATTCAAGGAGTTGTTACTTTTCGTATGTACACACCTGATT CGAAGCTCAAAAGATGGTTTGTTTCTAGGTGGGCAAATTTGACTAGTGGAAAGACTGATTATCCCCTTGGTTTAAGTACT TATGGTATCTTTGCATATGACACTGTTTATGCCCTTGCTCATGCACTTGATGCTTTTCTCAAACAAGGGAACCAGATTAC ATTTTCACATGATCCAAAGTTATCTGCACTGCAAGGAGGCAATATGCATCTTGATGCTGTGAAAATCTTCAATCAAGGAA ATCTGTTGAGGAAAAGTATTCATGAGGTTAACATGACCGGGGTGTCAGGTCCATTCAGCTATGATTCTGATGGAAACCTT GTTAATCCAGCATATGAAATCATCAATGTGATCGGAACAGGGGTACGAAGGATCGGTTATTGGTCTAATTACTCTGGATT ATCAGTTGTTCCTCCAGAAGCACTTTACTCAAAACCAGCTAATCGTTCTAGCGCAAATAAAAAACTACTCCCTGTGTTTT GGCCAGGGGAGACAACCCAGAAGCCCCGCGGTTGGGTTTTTCCAAACAATGGAAGACTGCTAAAAATTGGAGTGCCGAAA AGGGTTAGTTATCGCGAATTTCTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGAGGTGTTTCTTTC TGCAGCAAACTTGTTGCCCTATGCTGTCCCCTATAAGTTTATTTCATATGGGGATGGTAAGAGTAATCCTAGTAACACTG AGCTTGTGCGTCTTATCACTGCGGGCGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGCTG GTGGATTTCACTCAGCCATATATTGAATCAGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGAATCCAATGCTTGGGC ATTTTTGACGCCATTTACACCAATGATGTGGACTGTCACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTT TAGAACATAGGCTGAATGATGAGTTTAGGGGACCTCCCAAAAAACAAATTGTCACCATTTTGTGGTTTAGCTTTTCAACT ATGTTCTTTGCTCACAGGGAAAATACAGTTAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAAT AATTAACTCAAGTTACACGGCAAGCCTGACTTCAATCCTCACTGTACAACAACTTTCTTCACCTGTTAAAGGCATTGAAA GTTTAATAAGTAGCAAAGAACGTATAGGCTACTTGCAGGGTTCTTTTACTCGAACTTATTTAATTGAGGAAATGGGTATT GATGAATCCAGACTAGTTCCTCTAAAAGACCCTGAAGAAACTACCAAGGCACTGGAAAAAGGTCCACATAAGGGTGGTAT TGCTGCATATGTCGATGAGCGTGCTTACATAGAGCTTTTCCTTTCGACTCGGTGCGATTTTAGTGTTATAGGCCAGGAGT TCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCACTTGACATGTCAACTGCAATTCTGGAATTG GCAGAAAATGGAGATTTGCAAAGGATCCATGATAAATGGCTTCTGCGGAGAGCTTGCCTATCACAAGGTGCAAAGCTTGA AGTGGATAGGCTCAATCTCAGAAGCTTTTGGGGCCTCTACTTAGTCTGTGGGTTGGCATGTTTACTTGCTCTACTCATAT ATCTTTTTCAAACCCTGCGGCAGTATAAGAAGCACGGCCCGGAGGAACTTGAGTCTTCTTCTGGTCAAGGCGCATCAGGA TCTACACGATTGCAAACTTTTCTTTCATTTGTTGATGAAAAAGAAGAGATAGTTAAGACCCGCTCCAAGAGAAGACAAAT GGAGAGGATATCATATAGAAGCACAAGTGAGGTTGGATCATCCATCATCTCCAATAAAGAATTTTCTCTCTCGTCGTTAA GCAGAATTGATTCAGCTAATGAAGTCTAA
Protein sequence (LotjaGi4g1v0134800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MICVWVVMVLVVLSNGWFSSNGVVAMDNSTVPAFVNIGVLYSFNTSVGRIVKIAVDAAVQDVNSDPSILGKTELRVSLQE DSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELKVPLLSFSATDPTLSSLQFPFFIRTAFSDMYEMTAIA DFVNHFGWREVIAVYGDDDHGRNGIGSLGDKLADRRCKISFKAAMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPK VLSVAKSLGMMENGYVWIATTFLSSWLDIASPLSPDEMDTIQGVVTFRMYTPDSKLKRWFVSRWANLTSGKTDYPLGLST YGIFAYDTVYALAHALDAFLKQGNQITFSHDPKLSALQGGNMHLDAVKIFNQGNLLRKSIHEVNMTGVSGPFSYDSDGNL VNPAYEIINVIGTGVRRIGYWSNYSGLSVVPPEALYSKPANRSSANKKLLPVFWPGETTQKPRGWVFPNNGRLLKIGVPK RVSYREFLSQVQGTDMFKGFCIEVFLSAANLLPYAVPYKFISYGDGKSNPSNTELVRLITAGVFDAAVGDITITTERTKL VDFTQPYIESGLVVVASVKKTESNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDEFRGPPKKQIVTILWFSFST MFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLISSKERIGYLQGSFTRTYLIEEMGI DESRLVPLKDPEETTKALEKGPHKGGIAAYVDERAYIELFLSTRCDFSVIGQEFTRNGWGFAFPRDSPLALDMSTAILEL AENGDLQRIHDKWLLRRACLSQGAKLEVDRLNLRSFWGLYLVCGLACLLALLIYLFQTLRQYKKHGPEELESSSGQGASG STRLQTFLSFVDEKEEIVKTRSKRRQMERISYRSTSEVGSSIISNKEFSLSSLSRIDSANEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| PIRSF | 1 | 938 | 938 | 0.0 | ||
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 594 | 569 | - | – | |
| PANTHER | 27 | 903 | 877 | 0.0 | – | |
| PANTHER | 27 | 903 | 877 | 0.0 | – | |
| SUPERFAMILY | 32 | 466 | 435 | 6.06E-80 | ||
| CDD | 36 | 430 | 395 | 5.8344E-118 | – | |
| Pfam | 52 | 413 | 362 | 4.4E-81 | ||
| Gene3D | 53 | 403 | 351 | 5.1E-89 | – | |
| Gene3D | 151 | 427 | 277 | 5.1E-89 | – | |
| SUPERFAMILY | 449 | 815 | 367 | 2.39E-48 | – | |
| CDD | 474 | 814 | 341 | 5.31632E-77 | – | |
| SMART | 475 | 816 | 342 | 1.5E-58 | ||
| Gene3D | 495 | 829 | 335 | 8.7E-84 | – | |
| Pfam | 499 | 814 | 316 | 1.4E-20 | ||
| Gene3D | 571 | 779 | 209 | 8.7E-84 | – | |
| Gene3D | 581 | 856 | 276 | 8.7E-84 | – | |
| TMHMM | 595 | 614 | 20 | - | – | |
| Phobius | 595 | 614 | 20 | - | – | |
| Phobius | 615 | 625 | 11 | - | – | |
| Phobius | 626 | 644 | 19 | - | – | |
| Phobius | 645 | 655 | 11 | - | – | |
| TMHMM | 653 | 675 | 23 | - | – | |
| Phobius | 656 | 680 | 25 | - | – | |
| Phobius | 681 | 835 | 155 | - | – | |
| Pfam | 815 | 847 | 33 | 3.5E-34 | ||
| Phobius | 836 | 856 | 21 | - | – | |
| TMHMM | 836 | 855 | 20 | - | – | |
| Phobius | 857 | 942 | 86 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0134800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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