Transcript — View — Lotus Base

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LotjaGi4g1v0139100.8

Overview

Field	Value
Gene ID	LotjaGi4g1v0139100
Transcript ID	LotjaGi4g1v0139100.8
Related isoforms 7	LotjaGi4g1v0139100.1 LotjaGi4g1v0139100.2 LotjaGi4g1v0139100.3 LotjaGi4g1v0139100.4 LotjaGi4g1v0139100.5 LotjaGi4g1v0139100.6 LotjaGi4g1v0139100.7
Lotus japonicus genome version	Gifu v1.2
Description	Structural maintenance of chromosomes protein; TAIR: AT5G48600.1 structural maintenance of chromosome 3; Swiss-Prot: sp\|Q9FJL0\|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr\|A0A151RK13\|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:20735429..20736792) extracted from Lotus japonicus Gifu genome v1.2.

TCCACCGGCGGCGCGCCCCAGGCTCTTCATCAAGGAGATGGTGATGCGGAACTTCAAGTCCTACGCTGGTGAACAGCGCG TGGGTCCTTTCCATAAGGTTAGGGTTTTCCATTTTCACACTCAGTTGCTTCCAATTTCACTTGTGAGAACTTGAAAAAAC GGTTTTGGTTTCAGAGTTTTTCGGCTGTGGTTGGACCCAATGGGAGCGGGAAGAGTAACGTGATTGACGCAATGCTGTTT GTGTTCGGGAAGCGAGCGAAGCAGGTGTGTGTTCTTGAATGTGCTAAGAACTAATGAGTGTTTTTAATTTTTAATTTTTT TCTTCTTCTTGTGCTTCTTTCATTTGGAAATTGGTGGTTGCAGATGCGGCTTAACAAAGTTTCGGAGCTTATCCACAATT CCACCAATCACCAGAATTTGGATAGTGCTGGGGTTTCTGTTCATTTTCAGGAGATTGTCGATTTGGTAGCTTTTCTTATT AACCTTGTTTTGTTAATTTTTAGATTTTATTACCATTATTATTATTGTTGTTGTTGTTGTTTTTCGTAAGATGAGATGCG AAAGAATGAGGCATAATATAATGCCATTCTATTTGATGTTTTATGATTGTTGTATTTATCAAAAGTCAAAACTGAAAACC CGGGGCATTATTATTATTATTATTTTAATTTTAATTTCAGTTGGTGTATTTTTACTAGTAATTCCAAAATGGCACCATTT TCTTGTAAGATGAGATATTTGATATTTGATGACAAAAAGTGGACCCTAACTATACACATATTCATTTGCTAAGTTTTATT CAAACTTATTCTATTTTTTTGCTTTTCTTTTGTTTCATCTTTCATGAGCTCGCATTTAAGTTGAGCTTTATGCCACAGAG ACTAAAGAGTTTTCAGTGCTCCTGTTTTATTGCCCTTCTGTTGTTTTCCATCTTTGGTTGAAAAAGAACTAATGTTTCTA TGGTTGCAGGATGATGGAACATATGAGGCTGTTCCAGGAAGTGATTTTGTGATTACAAGGGTGGCTTTACGGGATAACTC CTCTAAGTATTATATTAATGATCGTTCGAGTAACTTCACTGAAGTCACTAAGAAACTGAAAGGGAAAGGTGTTGACCTTG ACAATAATAGGTTTCTAATCCTTCAGGTTGGGTATTTATTACATTGTGTTTTTAGTTTTCCGGAAGGCTTTTCCTAGTTA ACTCTATTGATGATTGATCTGTTTCACAGGGTGAAGTTGAGCAGATCTCACTTATGAAGCCAAAAGCTCAAGGACCACAT GATGAGGGTTTTCTAGAATATCTGGAGGATATCATTGGGACGAACAAATATGTAGAAAAAATTGATGAATCATTTAAACA GTGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0139100.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGATGCGGAACTTCAAGTCCTACGCTGGTGAACAGCGCGTGGGTCCTTTCCATAAGAGTTTTTCGGCTGTGGTTGG ACCCAATGGGAGCGGGAAGAGTAACGTGATTGACGCAATGCTGTTTGTGTTCGGGAAGCGAGCGAAGCAGATGCGGCTTA ACAAAGTTTCGGAGCTTATCCACAATTCCACCAATCACCAGAATTTGGATAGTGCTGGGGTTTCTGTTCATTTTCAGGAG ATTGTCGATTTGGATGATGGAACATATGAGGCTGTTCCAGGAAGTGATTTTGTGATTACAAGGGTGGCTTTACGGGATAA CTCCTCTAAGTATTATATTAATGATCGTTCGAGTAACTTCACTGAAGTCACTAAGAAACTGAAAGGGAAAGGTGTTGACC TTGACAATAATAGGTTTCTAATCCTTCAGGGTGAAGTTGAGCAGATCTCACTTATGAAGCCAAAAGCTCAAGGACCACAT GATGAGGGTTTTCTAGAATATCTGGAGGATATCATTGGGACGAACAAATATGTAGAAAAAATTGATGAATCATTTAAACA GTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0139100.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQE IVDLDDGTYEAVPGSDFVITRVALRDNSSKYYINDRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPH DEGFLEYLEDIIGTNKYVEKIDESFKQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	1	186	186	6.8E-45	–
PANTHER	PTHR43939 View details on PTHR43939 Search for proteins/transripts with this domain View external data on PTHR43939	1	186	186	2.0E-99	–
PANTHER	PTHR43939:SF1 View details on PTHR43939:SF1 Search for proteins/transripts with this domain View external data on PTHR43939:SF1	1	186	186	2.0E-99	–
CDD	cd03274 View details on cd03274 Search for proteins/transripts with this domain View external data on cd03274	1	156	156	4.95376E-67	IPR041738 Show description in modal box View details on IPR041738 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02463 View details on PF02463 Search for proteins/transripts with this domain View external data on PF02463	2	133	132	1.0E-36	IPR003395 Show description in modal box View details on IPR003395 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	2	186	185	2.22E-29	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0139100.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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