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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0144800 |
| Transcript ID | LotjaGi4g1v0144800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|A0A1J7GH42|A0A1J7GH42_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0144800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23241966..23246681) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTCGAGTGGGAACGAGCGCGTGAGGACGATACGGGAGGTGTGCGCGAATGGGAGCTCCATGGCGACAGCTGAAGT TGAAGCTAAACTCGATGAAGGGAACATTCAAGAAGCTGAATCAGCATTGCGAGATGGCTTGTCTCTCAATTTTGAGGTCA GTTTTTGTGTATTGTATGTTTCATAATTGTGATCGAATCTATATCATGATGTTATGGCCCCATGAATTTAAAACCTTGAT CGTAACAAATTTTGTCTGAATTACATTATTGGCATGTTTGGATATGCTTTTATGATTGATTCTATTACTAAAATCAATTT TGGGGGAAACTTCGGTGAGTGAGTTTTGTGTGTTAGAATTGATTAGGAGGAAAATCAAGCGAATCAAAACATGCTATATG TTGTGTTAAAATTCCCATTGTTAATAGGTAGAGCTTTGGAGGTACGTGATAGACTGGTTTTATACCTTCATTGTAGAATA TGACTGGATTTAATTACAATTTTCAGTCCAATATTAAGGTCTTTGACTCTTTGGGGAGGGGGGGTTTTCATTTTCCTTAA CTTTTGTTTGAGGCATAGAATAGTCTTGGTCCCAACTCTCAATCTATGTTGTTAATCCCGGCTAGATCCGGCACGATCCC GGTGCGAAAAGGAAGTTTCTGACATTTCCAAAAATGTACTCCAATTTTAAACGCTGGGCCTGGGGGTGTTTTTTAGGGGT ATTTCCGGGCTTTCGTGACGAATAAAACCCTAGATGAGAGGAAGAGTTCGACCCTCTCCTCACTTGCCCTGCTCTCTGCG CCGTTGCTCTCTCAAGCGTGACAAATGGCTGCTACTATGGAGGAGGTATGAATATGTTATGGATTTCAAGTAATATTTAT CATAGATTTAGTGTATATGGCATAATTATGCAAAATATAGACAAAAATTCACTATTCCGGCTATCGCGCTATCCCATTTT TTGGGCCCGCCACTACGCGCTGAGATCTAGGATTGACAACATAGCTCCCAGCCTTTTATTGCAATATGTTAATACTTGCC AATCATCATTTGTGGAAAAGTTCTCCCTTGGGGCCAGGCTTCCACTCTCAGATTTATGATTACCCTTTTTACAAAAGAAA AGTTTGTGTATTGCTAGGAATTTGTTGTTTTATGGTACAACGTTTGCATAGTGTGTGAAGAATAAGATATGAGCACAACA GTAATGAAGTTCCACGAAGCAAAATTTGCAGTATCTTATCTATTTAATTTGAACTTTTTTTTTTCATTTTTAACAAATGT GCAACAGCCGGGGGGGGGGGGGGGAGTTCATTTCTTGTAAACATGAGTCAAATCTCTATTTTACCAGTATTGAGAATATA CTTTGATATGAAGTTATGAACAGGAACTTCATCACATGTAATTGGATTTGAAACCAGAGAAACTGGTACAATCTGTAAAT TTAAATACAAATAACTCATTGAGTGTAATATGAAGATCTGTCATACCTTTGTTTTATCTTGGAATTGAATTGCATAATAC CATTTTTGGTGAAAAATCAAATTGTATGTTTGAGTTATGTTCCATGGTCATTGTTAAACTGTAACAGGAAGCAAGAGCTC TTCTCGGAAAATTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTTCAAGCAGCA ATACAGCGACTGCAACCTTCCCTTTCTGAAAAGCCAACCATCAAGAGAGGTCCCACCCGTACTGAGTCACCTTCCTCGGT CTCACAGCATGGTGCTAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAGAAGCTTGGGAAGTTTACTG GTATTGAATATTGTATTAGCTTCTGAAAGTTATTCTCAACATGTTATTAACTTTTTGTCTTTATTGTCTTTTAGAATGGG AATGAATCTTCAATTCCCGCTGCACATATATCATTATATCTTTGAATCAGTTTGAATACATTGAAATGCTTATTTCATGG ATTTATGCAGAAGCTGCTAACGAGTGCAAGCATGTTGTTGATGCTGTTGAGAAGATATTTTATCAGGGTATATCTGATAC TCAAGTGGACAGTAAATTGCAGGAGATAGTCAGCCGTGCGGTAGAGCTCCTTCCCGAGCTTTGGAAACAGGCTGGTTGCC ATCCTGAGGCAATTGCTGCTTACCGGCATGCCCTTCTTAGTCAATGGAACCTTGACAATGAATGTTTCGCGAGAATTCAG AAAGAATTTGCTGTATTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGACGGGTCTTA CGTACCTAAAAATAACCTGGAAGAGGCAATGCTTCTTCTTATGATTCTCTTAAGAAAGTTTAGCCTAGGTAAGATAACTT GGGATCCTTCAATTATGGACCACCTAACATTTGCACTTTCAGTATGTGACCAAACTACTACATTAGCTAAGCAACTTGAA GAGTTGATGCCTGGTGTATATCACCGTATCGACCGTTGGAATTCTTTAGCTCTTTGTCATAGTGGAGCTGGACAAAACAA AAGTGCATTGGATTTGCTAAGGAAATCATTGCACAAGCATGAACGACCAGATGACCTGACATCGTTATTATCAGCTGCCA GGATTTGCAGTGAGGATCCCCATCTTGCTGCCGAGGGAGCAGGATATGCGCAGAGGGCAATCGATAATGCCGAAGGCTTA GATGAGCATTTGAAAGGTGTCACTCTTCGGATGCAGGGACTTTGCCTTGGCAAGCAAGCTAAGGTTGCTTCATCTGACTT TGAGAGGTCTATGCTTCAGTCAAAATCTCTGCAATCATTGGAGGATGCAGTTAGACTAGAGCCAAACAACTCTGATCTAA TTTTTGAATTGGCTATTCAATATGCCGAGCACCGAAATCTGACTGCTGCTTTACGCTATGCCAAGCAGTACTTTGACAAA ACTGGTGGCTCCAAGTTGGAGGGATGGAGATTACTTGCACTGGTTTTGTCTGCCCAAAAAAGATTTTTGGAGGCTGAAGT GGTGACTGATGCTGCTTTAGATGAGACTTCAAAATGGGAGCAAGGGCCACTGTTCAGGCTGAAAGCCAAGCTGAAGACCT CCCAGTTACGACCAATGGATGCTATTGATCTTTATCGTCACCTTCTTGCATTGGTCCAGGCCCAGAAGAAATCATTTGGG CATCTTAGACCTAGTTCACAGGTAAAATTCTGCCATTTTCTCTTCTTGCAGTAATTCTTATGTTTAAATTTAATAATAAT GAGATATGTGTTATCAACTTATTCTTGTGTTTTGTCATTGTTATTGAAATGGAAAGGCTTGCATCCTCTTTCTGGTGGTT TTACAGAAAGAAACTTTTTACTTAATGGGGATGAAGGAAAAAAGATAACAGCGGCATTTCCTCAAGAGATGCTCATTGCA TCATGGACTCCATTTATAAATTGTTGATTACAAAACTAATCTTACTCTTATTTTATTAACTTTTTGCAGGTTGAGAATGA TAAAATACATGAATTTGATGTATGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAAGATGCTGAAATCT GTTTGCAAAAGGCCAGAGAGTTAAAGGAATACTCAGCAGAAACAGTACACACTGAAGGTAATCCCGGATCCTTTATGCTG TTAAAAGTTTTCTACTTTAGCATGTAGCTTGTTTATTTTTATTTTTTGGGTTGTGCGAGCTCCGGCTACCTCTGGGGAGA GGGACTTTTACGGATCTACGTACACACTGAAGCTCTTGTCCTATAGGGAGAGGAATTGAGGCTATGGTCTTCAGGATTGG GCACACATTGAGCACCATGGGGGAAAATGCCCCCACTCAATTATAGACGTTTCTTATTACCATAGTAATTTGTCATTTAG CCTCCATTGCTTTGAATTAATGTCCTTCCACTTGTGTCCACTGCGAAAAATTTCTGGATTTGTCACTGGTTCTTGTAGGC CTAAGGCTTGATCTCTATACATGATAAGTTTACATATATTGTAAAGCGGAATCCTTAGGATGTGGTGGTGGAGCACAAGC TCATCATAAGCTGGAATGGAGCAAAAGCTAAGATTTATGGAAATTCAGAACCTCCCCTGTTTTAGAATAATAGGATATGG TCCTGTTGGAGGGAGAGTTTTTTTGTGGTAGCTTTTTACATATAATTATTGGACTCGACAGCCATTCATGATAGGTCATT TATGAAAGAAATTGTATCTTTCTCTCTCCAACTGAACCATATATTGTTAGTCTAAACTGCTGATGATCTGAATCCAAATT ACCTGCTAGCATGGTGTTAATATTTGAGAGCATCATAGACATTTTATATTGCTATTTGCTAATATGATTGTACCAGGTGT TATGTTTGACAGTCGTGGACAACTTGAAGAAGCTCTTGTGGCTGCTGTTAATGCTGTCCTGCTTGAACCAAACTATGTTC CAAGCAAGATCTTGGTAGGATCTTTGATGCTGAAATTGGGTTCTAAAGCTCTGCCTGTTGCTAGAAGCTTGCTTTCTGAT GCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTATTATTTGGGGTTAACTCACAAGGCTGATGGCCGAGTGGGCGA TGCTGCTGACTGCTTCCAGGCAGCTTACATGCTTGAAGAATCGGAGCCCATTGAAGATTTCATCTGCACGCATTGA
CDS sequence (LotjaGi4g1v0144800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCGAGTGGGAACGAGCGCGTGAGGACGATACGGGAGGTGTGCGCGAATGGGAGCTCCATGGCGACAGCTGAAGT TGAAGCTAAACTCGATGAAGGGAACATTCAAGAAGCTGAATCAGCATTGCGAGATGGCTTGTCTCTCAATTTTGAGGAAG CAAGAGCTCTTCTCGGAAAATTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTT CAAGCAGCAATACAGCGACTGCAACCTTCCCTTTCTGAAAAGCCAACCATCAAGAGAGGTCCCACCCGTACTGAGTCACC TTCCTCGGTCTCACAGCATGGTGCTAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAGAAGCTTGGGA AGTTTACTGAAGCTGCTAACGAGTGCAAGCATGTTGTTGATGCTGTTGAGAAGATATTTTATCAGGGTATATCTGATACT CAAGTGGACAGTAAATTGCAGGAGATAGTCAGCCGTGCGGTAGAGCTCCTTCCCGAGCTTTGGAAACAGGCTGGTTGCCA TCCTGAGGCAATTGCTGCTTACCGGCATGCCCTTCTTAGTCAATGGAACCTTGACAATGAATGTTTCGCGAGAATTCAGA AAGAATTTGCTGTATTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGACGGGTCTTAC GTACCTAAAAATAACCTGGAAGAGGCAATGCTTCTTCTTATGATTCTCTTAAGAAAGTTTAGCCTAGGTAAGATAACTTG GGATCCTTCAATTATGGACCACCTAACATTTGCACTTTCAGTATGTGACCAAACTACTACATTAGCTAAGCAACTTGAAG AGTTGATGCCTGGTGTATATCACCGTATCGACCGTTGGAATTCTTTAGCTCTTTGTCATAGTGGAGCTGGACAAAACAAA AGTGCATTGGATTTGCTAAGGAAATCATTGCACAAGCATGAACGACCAGATGACCTGACATCGTTATTATCAGCTGCCAG GATTTGCAGTGAGGATCCCCATCTTGCTGCCGAGGGAGCAGGATATGCGCAGAGGGCAATCGATAATGCCGAAGGCTTAG ATGAGCATTTGAAAGGTGTCACTCTTCGGATGCAGGGACTTTGCCTTGGCAAGCAAGCTAAGGTTGCTTCATCTGACTTT GAGAGGTCTATGCTTCAGTCAAAATCTCTGCAATCATTGGAGGATGCAGTTAGACTAGAGCCAAACAACTCTGATCTAAT TTTTGAATTGGCTATTCAATATGCCGAGCACCGAAATCTGACTGCTGCTTTACGCTATGCCAAGCAGTACTTTGACAAAA CTGGTGGCTCCAAGTTGGAGGGATGGAGATTACTTGCACTGGTTTTGTCTGCCCAAAAAAGATTTTTGGAGGCTGAAGTG GTGACTGATGCTGCTTTAGATGAGACTTCAAAATGGGAGCAAGGGCCACTGTTCAGGCTGAAAGCCAAGCTGAAGACCTC CCAGTTACGACCAATGGATGCTATTGATCTTTATCGTCACCTTCTTGCATTGGTCCAGGCCCAGAAGAAATCATTTGGGC ATCTTAGACCTAGTTCACAGGTTGAGAATGATAAAATACATGAATTTGATGTATGGCATGGTCTGGCAAATTTATATGCA AGCCTTTCTCATTGGAAAGATGCTGAAATCTGTGTTATGTTTGACAGTCGTGGACAACTTGAAGAAGCTCTTGTGGCTGC TGTTAATGCTGTCCTGCTTGAACCAAACTATGTTCCAAGCAAGATCTTGGTAGGATCTTTGATGCTGAAATTGGGTTCTA AAGCTCTGCCTGTTGCTAGAAGCTTGCTTTCTGATGCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTATTATTTG GGGTTAACTCACAAGGCTGATGGCCGAGTGGGCGATGCTGCTGACTGCTTCCAGGCAGCTTACATGCTTGAAGAATCGGA GCCCATTGAAGATTTCATCTGCACGCATTGA
Protein sequence (LotjaGi4g1v0144800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSGNERVRTIREVCANGSSMATAEVEAKLDEGNIQEAESALRDGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDL QAAIQRLQPSLSEKPTIKRGPTRTESPSSVSQHGASLVLEAIYLKAKSLQKLGKFTEAANECKHVVDAVEKIFYQGISDT QVDSKLQEIVSRAVELLPELWKQAGCHPEAIAAYRHALLSQWNLDNECFARIQKEFAVFLLYSGVEASPPSLAVQTDGSY VPKNNLEEAMLLLMILLRKFSLGKITWDPSIMDHLTFALSVCDQTTTLAKQLEELMPGVYHRIDRWNSLALCHSGAGQNK SALDLLRKSLHKHERPDDLTSLLSAARICSEDPHLAAEGAGYAQRAIDNAEGLDEHLKGVTLRMQGLCLGKQAKVASSDF ERSMLQSKSLQSLEDAVRLEPNNSDLIFELAIQYAEHRNLTAALRYAKQYFDKTGGSKLEGWRLLALVLSAQKRFLEAEV VTDAALDETSKWEQGPLFRLKAKLKTSQLRPMDAIDLYRHLLALVQAQKKSFGHLRPSSQVENDKIHEFDVWHGLANLYA SLSHWKDAEICVMFDSRGQLEEALVAAVNAVLLEPNYVPSKILVGSLMLKLGSKALPVARSLLSDALRIEPTNRMAWYYL GLTHKADGRVGDAADCFQAAYMLEESEPIEDFICTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 672 | 672 | 0.0 | ||
| PANTHER | 1 | 672 | 672 | 0.0 | – | |
| SUPERFAMILY | 36 | 452 | 417 | 1.2E-8 | ||
| MobiDBLite | 91 | 110 | 20 | - | – | |
| SMART | 119 | 152 | 34 | 63.0 | ||
| Gene3D | 278 | 455 | 178 | 6.1E-9 | ||
| SMART | 303 | 336 | 34 | 16.0 | ||
| ProSiteProfiles | 407 | 492 | 86 | 6.768 | ||
| SUPERFAMILY | 409 | 660 | 252 | 1.74E-11 | ||
| Pfam | 429 | 488 | 60 | 0.0023 | – | |
| Gene3D | 457 | 669 | 213 | 9.5E-15 | ||
| SMART | 459 | 492 | 34 | 250.0 | ||
| ProSiteProfiles | 578 | 667 | 90 | 12.259 | ||
| Pfam | 616 | 661 | 46 | 0.0059 | – | |
| SMART | 634 | 667 | 34 | 12.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0144800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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