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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0173200 |
| Transcript ID | LotjaGi4g1v0173200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:34669370..34673653) extracted from Lotus japonicus Gifu genome v1.2.
CACATGAAGAACTTGTCCACACAGGTGAACCATTTAATCATTCTCTAATGGGCATGTTTGATTTGAATACAAGAAAATTA TTGTGAAACCAAAAACACGGTGAACTGTAGAAATAATTTCTCTTAGCTTAGTTTTTGTGACCGTCAACCATGATTTTATC TTTAGTTTGATTTTCCACCGTGTATCCAAATAAGTTATAGCAGATGTTCTTGTTTGTGGTTAATTAACACAAGAGTTATT TTCTAGTATATAATTTTTGCTGGCTTGTGTATAAGATTATATTTCCCATATTTTATTTGTCAGGATCTTGAACAACTGGC AGCAGAGCTGAGAGTAGACATTGTACACTCTGTTTCAAATACTGGTGGGCATCTTAGCTCAAGCTTGGGGGTGGTGGAGT TAGCAGTGGCTCTGCATCATGTTTTCAATACCCCTGAAGACAAGATCATATGGGATGTTGGCCATCAAGTCAGTTTTTTC CCTCTTGCTGTTGTTTTTTAATGCAAAATGAATTAGAAAAAAAAATTACTTGTATTCATCTTGGAGAGGAGAGAAATTTC AATGAGAGAAGAAGAAGAAAAGAGGTCAGGAGAGAAGAGTATAGCAAAGGAGGTGAACTAAAAGAAAAATTATTAACATA ACTTGAATTGATATGAAGAAGAAAGCTTAGGTCAAATTTGAAGTATAATACTCCCTCCGGTCCTATTTATCCTATTTATA AGCAACAAAAAAAAATTCATATAGTTTAAGAAATGTAGTTATACTAGATAAAATGCATTAAATTTGTCTTAAATCAAAAT AAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAGACACATTTTACAAG TTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAA GGTTTTTCTTCTCTTTCATGCTTATAAATAGAACCGGAGGGAGTAACTTTTTTTGAACAACAATTTTTTTATCATGATTG ATAGCAGAAGTTTGGTAGAGATGACGCAAAAAGTCAAATTTGAATTATTAATGATAATAATAGATATTAATCAATTGAAT ATATATATTTTATTGGTACATGAATATATAAATTTTAAATTATTTTTTATCCACAAGAAGACAAAGTTATCCCCTGATCT TAACTCCTCTCCTCTCTCTTCATTTCCCTTTCTATTTGGTGGAGATCGTTGATAACATAACATATAGTTAACGTCACCCA GCCTATTAATTGTGTATAAAAGCATTAAAAAACTTTAAGGAGGGATCAAAAAGTTGAGGTTGGAGGGATTTTGCTCCCCT CCATTTCCCTCCCCTCCCCTCCCCTCCTAAAATTTGAACCAAACAAAATCAGATTTTAAAAATCCCTCCCCTCCCCTCCC CTCCCCTCCGTTCTCCTCCAACCAAACAATTCCTAAGGATGGAAGTTATACTAAAGATGTTGTATATTGGTGTATAACCT ATTTATTAATTAGTTTTTGAAATTTGCTCATACTAAAACTATTTCAGATTTCTAGGCTGCATGTCCATTTTTTTTTATCA ATTCTTAATTGTTATCAAGAGCTGTGCCATATGTGTAAGGGTCTAAGAAGAAGTAACAAAATTGCAGGCATACCCTCACA AGATTCTCACAGGTAGAAGGTCCCGCATGCACACAATTAGGAAGACATCAGGGCTAGCAGGCTTTCCGAAAAGGGATGAG AGCATTCATGATGCTTTTGGGGCAGGACACAGTTCTACAAGCATATCAGCTGGTCTTGGTGAGATTCTGGAATCAATATA TCAGAGTTGTTAATTGTGGATATTGCCGAAACTGAGGGTCATGGTGGAAAGCCGAAATCCTGCCATACATGACAAATAAT GGCACAATATGGCGGGATATTGCAGTCATATGGCGGGATTTCGGCCATGGCGGAAAGCCAAAAAGCCGCCATGAGAAAAT GGTGGCGGATATTTGATAACACTGCAATATATAAGATCTATACATGTTTTTACATTATTCAATGGATGTGGAGATGCATT TATCTATCTGATTGAACCACAGTTCTCAACTCTCTTATTTTTTGTTTCAATTTGTTTTTGTCTAGGCATGGCAGTTGCAA GGGATCTATTGGGAAATAAAAACAGTGTAATTTCAGTGATTGGAGATGGAGCAATGACTGCAGGGCAGGCTTATGAGGCC ATGAACAATGCAGGATTCCTTGATACTAACTTGATAGTTGTACTTAATGATAACAAGCAAGTCTCTTTGCCAACTGCAAC ACTTGATGGCCCTGCAACTCCAGTTGGAGCCATCAGTAGTACTTTAAGCAAACTTCAAGCAAGCACTCAATTCCGCAAAC TCAGAGAAGCTGCAAAAGTAAGCATCTAGAACTTATACTAGAACGTAGCAAATATTCATAGCATGTTTTGATAAACTTCT CTTTTGTCAGAATCAATTCTAAAACTCAGAAGCTACTAAAAAAAGCTTCTCCTCATAATTCATTATGACTTCAGAATCAA TTGTAGAAAAATATACTAAGGCACTCAATATCCTTTGGTATTTGCCTCTAATTTTATTTGCTATAGAGCATCACAAAACA AATAGGAGGACAAACACACCAAGTTGCTGCAAAAGTAGATGAGTATGCAAGAGGTATGATTAGTGCTTCTGGTTCTACAT TTTTTGAGGAGCTCGGGTTATACTACATCGGCCCTGTGGATGGTCATAATGTTGAAGATTTAGTCACCATTTTTGAGAAA GTGAAAGCAACGCCTGCCCCAGGTCCAGTTTTGATTCATATTGTGACAGAAAAAGGGAAGGGATACCCCCCAGCTGAAGG AGCAGATGATAAAATGCATGGTAAGAAATTTGTTTTTCTTTTGTTTTTAATTTTAACAATGTCTTGATGAGAAAATCTTA AGGATTCTCATTCTTTCTCACACTTTCAGGTGTTGTGAAGTTTGATCCAAAAACGGGTCGCCAGTTTAAGCCAAAACCCT CCACACTTTCATACACCCAGTACTTTGCTGAATCTTTGATAAAGGAAGCTGAAATCGACAACAAGATAGTAGCTATTCAC GCAGCAATGGGTGGAGGAACTGGCCTCAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTCGATGTCGGGATAGCTGA ACAACATGCTGTTACCTTTGCAGCTGGATTAGCTACTGAAGGCCTCAAGCCATTTTGTGCGATTTATTCATCATTCCTGC AACGTGGTTATGATCAGGTGAGCCAAAACATCACATAAGAATATGTCCTAATGATCTATTATCCATGTCACTTTTCTGGT TACAAAACAATTTCATCACTACTGTAATTATTGTGTATGAAGGTTGTCCACGATGTTGATCTTCAGAAATTACCTGTCCG ATTCGCTCTGGATAGAGCTGGTTTGGTTGGTGCAGATGGACCTACTCATTGTGGAGCATTTGACATCACTTTCATGGCTT GCTTGCCCAACATGGTTGTCATGGCTCCATCTGATGAAGCTGAATTGATGCATATGGTTGCAACTGCAGCAGCAATAGAT GATAGACCAAGCTGCTTTAGATTCCCAAGGGGTAATGGAATCGGAGCCACTCTTCCCCTTAATAACAAAGGAACCCCTCT AGAGGTTAGCATAAATTTCTCAGAGGCAGTTTTACAAACACATTGCAGTATGGATAAGAAACCAGATTGAAATTCTTTTG TTATGCAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAGCAACGTAGCTCTTCTAGGATACGGTTCAGTAGTTCAAAAT TGCCATCATGCTGCAAAAATGCTTAGCGCAATAGGAATTGATGTTACCGTTGCTGATGCTAGGTTCTGCAAACCTTTGGA TACTGATCTCATTAAGCTACTAGCTAAAGAGCATGAAATACTAATCACAGTGGAGGAAGGTTCTATTGGAGGCTTTGGAT CGCATGTTTCACAATACTTAAGCTTAGCTGGGATCTTGGATGGTCCTCTGAAGGTAAATCATCTTCGAAGAACATGTTAA TCTGTCTTAAATTTCATTTCATTGTTGTTCTAATTTCCTTTCGAACTTCACTTGCAGTGGAGAGCGATGATGCTTCCTGA TAGGTACATTGACCATGGATCACCCCAAGATCAGACTGAAGAAGCAGGTCTATCATCAAAGCAAATTGCCGCCACGGTCT TGTCTCTTATGGAAAGACCAAAAGAAGCTATTCTATTCAAATAA
CDS sequence (LotjaGi4g1v0173200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACTTGTCCACACAGGATCTTGAACAACTGGCAGCAGAGCTGAGAGTAGACATTGTACACTCTGTTTCAAATAC TGGTGGGCATCTTAGCTCAAGCTTGGGGGTGGTGGAGTTAGCAGTGGCTCTGCATCATGTTTTCAATACCCCTGAAGACA AGATCATATGGGATGTTGGCCATCAAGCATACCCTCACAAGATTCTCACAGGTAGAAGGTCCCGCATGCACACAATTAGG AAGACATCAGGGCTAGCAGGCTTTCCGAAAAGGGATGAGAGCATTCATGATGCTTTTGGGGCAGGACACAGTTCTACAAG CATATCAGCTGGTCTTGGCATGGCAGTTGCAAGGGATCTATTGGGAAATAAAAACAGTGTAATTTCAGTGATTGGAGATG GAGCAATGACTGCAGGGCAGGCTTATGAGGCCATGAACAATGCAGGATTCCTTGATACTAACTTGATAGTTGTACTTAAT GATAACAAGCAAGTCTCTTTGCCAACTGCAACACTTGATGGCCCTGCAACTCCAGTTGGAGCCATCAGTAGTACTTTAAG CAAACTTCAAGCAAGCACTCAATTCCGCAAACTCAGAGAAGCTGCAAAAAGCATCACAAAACAAATAGGAGGACAAACAC ACCAAGTTGCTGCAAAAGTAGATGAGTATGCAAGAGGTATGATTAGTGCTTCTGGTTCTACATTTTTTGAGGAGCTCGGG TTATACTACATCGGCCCTGTGGATGGTCATAATGTTGAAGATTTAGTCACCATTTTTGAGAAAGTGAAAGCAACGCCTGC CCCAGGTCCAGTTTTGATTCATATTGTGACAGAAAAAGGGAAGGGATACCCCCCAGCTGAAGGAGCAGATGATAAAATGC ATGGTGTTGTGAAGTTTGATCCAAAAACGGGTCGCCAGTTTAAGCCAAAACCCTCCACACTTTCATACACCCAGTACTTT GCTGAATCTTTGATAAAGGAAGCTGAAATCGACAACAAGATAGTAGCTATTCACGCAGCAATGGGTGGAGGAACTGGCCT CAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTCGATGTCGGGATAGCTGAACAACATGCTGTTACCTTTGCAGCTG GATTAGCTACTGAAGGCCTCAAGCCATTTTGTGCGATTTATTCATCATTCCTGCAACGTGGTTATGATCAGGTTGTCCAC GATGTTGATCTTCAGAAATTACCTGTCCGATTCGCTCTGGATAGAGCTGGTTTGGTTGGTGCAGATGGACCTACTCATTG TGGAGCATTTGACATCACTTTCATGGCTTGCTTGCCCAACATGGTTGTCATGGCTCCATCTGATGAAGCTGAATTGATGC ATATGGTTGCAACTGCAGCAGCAATAGATGATAGACCAAGCTGCTTTAGATTCCCAAGGGGTAATGGAATCGGAGCCACT CTTCCCCTTAATAACAAAGGAACCCCTCTAGAGATAGGAAAAGGCAGAATTCTGATAGAAGGCAGCAACGTAGCTCTTCT AGGATACGGTTCAGTAGTTCAAAATTGCCATCATGCTGCAAAAATGCTTAGCGCAATAGGAATTGATGTTACCGTTGCTG ATGCTAGGTTCTGCAAACCTTTGGATACTGATCTCATTAAGCTACTAGCTAAAGAGCATGAAATACTAATCACAGTGGAG GAAGGTTCTATTGGAGGCTTTGGATCGCATGTTTCACAATACTTAAGCTTAGCTGGGATCTTGGATGGTCCTCTGAAGTG GAGAGCGATGATGCTTCCTGATAGGTACATTGACCATGGATCACCCCAAGATCAGACTGAAGAAGCAGGTCTATCATCAA AGCAAATTGCCGCCACGGTCTTGTCTCTTATGGAAAGACCAAAAGAAGCTATTCTATTCAAATAA
Protein sequence (LotjaGi4g1v0173200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNLSTQDLEQLAAELRVDIVHSVSNTGGHLSSSLGVVELAVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIR KTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVARDLLGNKNSVISVIGDGAMTAGQAYEAMNNAGFLDTNLIVVLN DNKQVSLPTATLDGPATPVGAISSTLSKLQASTQFRKLREAAKSITKQIGGQTHQVAAKVDEYARGMISASGSTFFEELG LYYIGPVDGHNVEDLVTIFEKVKATPAPGPVLIHIVTEKGKGYPPAEGADDKMHGVVKFDPKTGRQFKPKPSTLSYTQYF AESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVVH DVDLQKLPVRFALDRAGLVGADGPTHCGAFDITFMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAT LPLNNKGTPLEIGKGRILIEGSNVALLGYGSVVQNCHHAAKMLSAIGIDVTVADARFCKPLDTDLIKLLAKEHEILITVE EGSIGGFGSHVSQYLSLAGILDGPLKWRAMMLPDRYIDHGSPQDQTEEAGLSSKQIAATVLSLMERPKEAILFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 634 | 634 | 0.0 | – | |
| Pfam | 1 | 277 | 277 | 2.4E-109 | ||
| Hamap | 1 | 625 | 625 | 40.788 | ||
| PANTHER | 1 | 634 | 634 | 0.0 | ||
| TIGRFAM | 2 | 624 | 623 | 5.8E-230 | ||
| SUPERFAMILY | 4 | 357 | 354 | 1.43E-71 | ||
| ProSitePatterns | 17 | 36 | 20 | - | ||
| CDD | 28 | 283 | 256 | 3.07361E-117 | ||
| SUPERFAMILY | 291 | 475 | 185 | 4.16E-61 | ||
| Gene3D | 312 | 483 | 172 | 8.7E-66 | – | |
| SMART | 314 | 479 | 166 | 7.1E-68 | ||
| Pfam | 314 | 475 | 162 | 1.1E-40 | ||
| CDD | 320 | 473 | 154 | 1.66538E-71 | – | |
| ProSitePatterns | 420 | 436 | 17 | - | ||
| SUPERFAMILY | 488 | 624 | 137 | 1.57E-34 | ||
| Gene3D | 493 | 625 | 133 | 3.5E-35 | ||
| Pfam | 493 | 616 | 124 | 1.5E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi4g1v0173200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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