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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0176100 |
| Transcript ID | LotjaGi4g1v0176100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:35686027..35687594) extracted from Lotus japonicus Gifu genome v1.2.
ATAACAATTAAGGCACAAACTGGGTGATTTCAATCAAAGCAGGGGCCTTTCTCCCTGCCAGAACCATATCCAATCAAGGA CCCTGCATCATAATTTGAGGTTGTCTTTGTGAAAAACCCATCACAGGCACATCATAAAGGGGATTCCTTGATTTGAGATC TTGTTGCTTTGCAGTTGCAGGATCAGAACTTTCACTTTTCTGTTAAATCATAGTTATGAAGGGTGAGGAGGGGAACAAGA GGTACATCAGCTCTGAGGAGTTGAAGGAGCACAACAAGCAAGGAGATCTGTGGATATCAATTCAGGGTAAGGTTTACAAT GTCTCTGATTGGGCCAAGGATCACCCTGGTGGTGAGGTTCCCCTTTTGAATCTTGCTGGCCAGGATGTCACTGATGCATT CATTGCATACCATCCTGGCTCAGCATGGCAATATCTTGACAAATTCTTCACCGGGTATCACCTCAACGATTTCCAAGTCT CTGAGGTATCCAGGGATTACAGGAAACTCGTGACCGAGTTTGTCAAATTGGGGCTTTTTGAGAAGAAAGAGCATGTCACC TTATACACCCTCACCTCTGTTGCTGTTATGTTTTCCATTGTTGTTTATGCCGTCCTCAGATGCACAAGCGTGTGGGCTCA TTTGGGCTCTGCCATGTTGCTGGGTTTGCTTTGGATGCAGAGCACTTATGTGGGTCATGATTCTGGTCACTATGAGGTTA TGTCGAGTCGCGGTTACAACAAATTAGCCCAAGTTTTGTGTGGGAATTGTATGACTGGGATAAGCATTGCCTGGTGGAAA TGGACTCACAATGCTCATCACATTGCCTGTAACAGTCTTGACTATGATCCTGATCTGCAGCATATCCCTGTTTTTGCTGT ATCTTCTCGTTTCTTCAGTTCCATTAGATCTTGTTTCTATGGGAGGGAGCTCAAGTTTGATGCTTTGTCAAGGTTTCTGA TCAGTTACCAGCACTGGACATTCTACCCGGTCCTGTGCTTTGCCAGGGTCAACTTGTACCTTCAGACTCTTCTGCTCTTG TTTTCAGGGCGTAAAGTCCCAGATAGAGCTTTAAACATATTGGGGATCCTTGTATTTTGGACTTGGTTCCCTCTTCTTTT GTCGTGTCTTCCAAATTGGCCAGAAAGGGTTATGTTTGTGCTAGCTTCCTTTGTTGTTTGTTCTGTTCAGCATCTGCAAT TCTGTTTGAACCATTTTGCTGCAAATGTGTATGTGGGGCCACCAAAGGGGAATGACTGGTTTGAGAAGCAGACAAGTGGG ACATTGGACATCTCTTGCTCATCTTGGATGGATTGGTTCTTTGGTGGTTTGCAGTTTCAGCTTGAGCATCATTTGTTCCC AAGGCTTCCAAGGGCTCAATTGAGGAAGATATCTCCATTGGTGATTGATCTTTGCAAGAAGCATAATTTGCCTTACAGGA GTTTGTCATTTGTGGAGGCCAATCTTTGGACTCTTAAGACACTCAGAACTGCTGCTCTTCAAGCAAGGAACCTCATTGAT CCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTCAACACTCATGGTTGA
CDS sequence (LotjaGi4g1v0176100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTGAGGAGGGGAACAAGAGGTACATCAGCTCTGAGGAGTTGAAGGAGCACAACAAGCAAGGAGATCTGTGGAT ATCAATTCAGGGTAAGGTTTACAATGTCTCTGATTGGGCCAAGGATCACCCTGGTGGTGAGGTTCCCCTTTTGAATCTTG CTGGCCAGGATGTCACTGATGCATTCATTGCATACCATCCTGGCTCAGCATGGCAATATCTTGACAAATTCTTCACCGGG TATCACCTCAACGATTTCCAAGTCTCTGAGGTATCCAGGGATTACAGGAAACTCGTGACCGAGTTTGTCAAATTGGGGCT TTTTGAGAAGAAAGAGCATGTCACCTTATACACCCTCACCTCTGTTGCTGTTATGTTTTCCATTGTTGTTTATGCCGTCC TCAGATGCACAAGCGTGTGGGCTCATTTGGGCTCTGCCATGTTGCTGGGTTTGCTTTGGATGCAGAGCACTTATGTGGGT CATGATTCTGGTCACTATGAGGTTATGTCGAGTCGCGGTTACAACAAATTAGCCCAAGTTTTGTGTGGGAATTGTATGAC TGGGATAAGCATTGCCTGGTGGAAATGGACTCACAATGCTCATCACATTGCCTGTAACAGTCTTGACTATGATCCTGATC TGCAGCATATCCCTGTTTTTGCTGTATCTTCTCGTTTCTTCAGTTCCATTAGATCTTGTTTCTATGGGAGGGAGCTCAAG TTTGATGCTTTGTCAAGGTTTCTGATCAGTTACCAGCACTGGACATTCTACCCGGTCCTGTGCTTTGCCAGGGTCAACTT GTACCTTCAGACTCTTCTGCTCTTGTTTTCAGGGCGTAAAGTCCCAGATAGAGCTTTAAACATATTGGGGATCCTTGTAT TTTGGACTTGGTTCCCTCTTCTTTTGTCGTGTCTTCCAAATTGGCCAGAAAGGGTTATGTTTGTGCTAGCTTCCTTTGTT GTTTGTTCTGTTCAGCATCTGCAATTCTGTTTGAACCATTTTGCTGCAAATGTGTATGTGGGGCCACCAAAGGGGAATGA CTGGTTTGAGAAGCAGACAAGTGGGACATTGGACATCTCTTGCTCATCTTGGATGGATTGGTTCTTTGGTGGTTTGCAGT TTCAGCTTGAGCATCATTTGTTCCCAAGGCTTCCAAGGGCTCAATTGAGGAAGATATCTCCATTGGTGATTGATCTTTGC AAGAAGCATAATTTGCCTTACAGGAGTTTGTCATTTGTGGAGGCCAATCTTTGGACTCTTAAGACACTCAGAACTGCTGC TCTTCAAGCAAGGAACCTCATTGATCCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTCAACACTCATGGTTGA
Protein sequence (LotjaGi4g1v0176100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGEEGNKRYISSEELKEHNKQGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAYHPGSAWQYLDKFFTG YHLNDFQVSEVSRDYRKLVTEFVKLGLFEKKEHVTLYTLTSVAVMFSIVVYAVLRCTSVWAHLGSAMLLGLLWMQSTYVG HDSGHYEVMSSRGYNKLAQVLCGNCMTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSSRFFSSIRSCFYGRELK FDALSRFLISYQHWTFYPVLCFARVNLYLQTLLLLFSGRKVPDRALNILGILVFWTWFPLLLSCLPNWPERVMFVLASFV VCSVQHLQFCLNHFAANVYVGPPKGNDWFEKQTSGTLDISCSSWMDWFFGGLQFQLEHHLFPRLPRAQLRKISPLVIDLC KKHNLPYRSLSFVEANLWTLKTLRTAALQARNLIDPSSQNLLWEAFNTHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 438 | 438 | 6.5E-130 | ||
| Phobius | 1 | 113 | 113 | - | – | |
| Gene3D | 2 | 88 | 87 | 6.1E-22 | ||
| PANTHER | 5 | 450 | 446 | 1.6E-295 | – | |
| PANTHER | 5 | 450 | 446 | 1.6E-295 | – | |
| SUPERFAMILY | 8 | 85 | 78 | 1.11E-26 | ||
| ProSiteProfiles | 8 | 87 | 80 | 23.112 | ||
| SMART | 11 | 83 | 73 | 1.2E-22 | ||
| Pfam | 13 | 81 | 69 | 2.1E-22 | ||
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 114 | 134 | 21 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| Pfam | 139 | 409 | 271 | 8.0E-33 | ||
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 140 | 161 | 22 | - | – | |
| CDD | 143 | 405 | 263 | 3.94975E-61 | – | |
| Phobius | 162 | 172 | 11 | - | – | |
| Phobius | 173 | 194 | 22 | - | – | |
| Phobius | 195 | 253 | 59 | - | – | |
| Phobius | 254 | 276 | 23 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 277 | 287 | 11 | - | – | |
| Phobius | 288 | 308 | 21 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 309 | 313 | 5 | - | – | |
| Phobius | 314 | 335 | 22 | - | – | |
| Phobius | 336 | 450 | 115 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi4g1v0176100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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